Wall clock time and date at job start Sat Apr 11 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46994 * 2 1 4 4 C 1.42897 * 114.00188 * 181.53313 * 3 2 1 5 5 H 1.09003 * 109.46916 * 6.05154 * 4 3 2 6 6 C 1.53001 * 109.47148 * 246.05111 * 4 3 2 7 7 C 1.52996 * 109.47072 * 66.43692 * 6 4 3 8 8 C 1.50698 * 109.47349 * 126.04489 * 4 3 2 9 9 O 1.21287 * 119.99895 * 5.00959 * 8 4 3 10 10 N 1.34774 * 120.00186 * 184.99644 * 8 4 3 11 11 C 1.46931 * 120.64097 * 359.72783 * 10 8 4 12 12 C 1.53194 * 108.76863 * 126.59000 * 11 10 8 13 13 C 1.53001 * 109.34784 * 54.58607 * 12 11 10 14 14 C 1.52989 * 109.62993 * 298.78475 * 13 12 11 15 15 C 1.46932 * 120.64569 * 180.02562 * 10 8 4 16 16 C 1.53250 * 109.36487 * 178.84318 * 13 12 11 17 17 N 1.47154 * 108.40934 * 187.91552 * 16 13 12 18 18 C 1.36945 * 120.98156 * 230.48858 * 17 16 13 19 19 H 1.08007 * 119.99268 * 154.04780 * 18 17 16 20 20 C 1.38808 * 120.00249 * 334.05165 * 18 17 16 21 21 N 1.31616 * 120.00119 * 343.98474 * 20 18 17 22 22 Si 1.86799 * 119.99548 * 163.98999 * 20 18 17 23 23 H 1.48499 * 109.47319 * 60.00124 * 22 20 18 24 24 H 1.48503 * 109.46720 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47393 * 299.99287 * 22 20 18 26 26 C 1.47148 * 118.03025 * 50.47259 * 17 16 13 27 27 C 1.53303 * 108.36843 * 309.40466 * 26 17 16 28 28 O 1.42897 * 109.54867 * 59.03496 * 13 12 11 29 29 H 1.08992 * 109.47148 * 300.00091 * 1 2 3 30 30 H 1.08995 * 109.46854 * 60.00500 * 1 2 3 31 31 H 1.09005 * 109.46575 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47477 * 239.99275 * 2 1 3 33 33 H 1.09009 * 109.46834 * 119.99254 * 2 1 3 34 34 H 1.09005 * 109.46620 * 186.43542 * 6 4 3 35 35 H 1.09003 * 109.46923 * 306.42978 * 6 4 3 36 36 H 1.08996 * 109.47349 * 55.86829 * 7 6 4 37 37 H 1.09006 * 109.46733 * 175.86869 * 7 6 4 38 38 H 1.09007 * 109.46867 * 295.86396 * 7 6 4 39 39 H 1.08995 * 109.58559 * 246.37167 * 11 10 8 40 40 H 1.08991 * 109.59017 * 6.80709 * 11 10 8 41 41 H 1.09002 * 109.49127 * 294.62377 * 12 11 10 42 42 H 1.08999 * 109.49365 * 174.54643 * 12 11 10 43 43 H 1.09007 * 109.49105 * 301.24022 * 14 13 12 44 44 H 1.09002 * 109.51107 * 181.18357 * 14 13 12 45 45 H 1.09011 * 109.58416 * 353.19207 * 15 10 8 46 46 H 1.08997 * 109.59191 * 113.46564 * 15 10 8 47 47 H 1.09003 * 109.67841 * 307.64193 * 16 13 12 48 48 H 1.08996 * 109.68357 * 68.17894 * 16 13 12 49 49 H 0.96995 * 119.99946 * 180.02562 * 21 20 18 50 50 H 1.09000 * 109.68473 * 69.12125 * 26 17 16 51 51 H 1.09001 * 109.68832 * 189.68853 * 26 17 16 52 52 H 1.09000 * 109.51103 * 172.27843 * 27 26 17 53 53 H 1.08993 * 109.51290 * 292.42723 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4304 1.4603 -0.0349 5 1 3.8703 0.4713 -0.1632 6 6 3.9257 2.0726 1.2768 7 6 3.6562 1.1006 2.4272 8 6 3.8361 2.3437 -1.1865 9 8 2.9885 2.9017 -1.8507 10 7 5.1409 2.5139 -1.4781 11 6 6.1797 1.8497 -0.6789 12 6 7.0995 1.0655 -1.6201 13 6 7.6410 2.0054 -2.6991 14 6 6.4791 2.5714 -3.5178 15 6 5.5524 3.3724 -2.5973 16 6 8.5839 1.2279 -3.6237 17 7 9.2380 2.1841 -4.5310 18 6 9.2523 1.9750 -5.8844 19 1 9.3372 2.8139 -6.5594 20 6 9.1577 0.6852 -6.3885 21 7 9.3698 -0.3469 -5.5997 22 14 8.7295 0.4143 -8.1864 23 1 9.7569 1.0597 -9.0427 24 1 8.6917 -1.0425 -8.4721 25 1 7.4000 1.0102 -8.4739 26 6 9.8759 3.3717 -3.9411 27 6 8.8678 4.0459 -3.0033 28 8 8.3591 3.0766 -2.0837 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 4.9965 2.2645 1.2066 35 1 3.4000 3.0094 1.4618 36 1 4.1211 0.1396 2.2073 37 1 4.0744 1.5041 3.3494 38 1 2.5809 0.9657 2.5444 39 1 6.7606 2.5982 -0.1402 40 1 5.7137 1.1657 0.0302 41 1 6.5369 0.2585 -2.0896 42 1 7.9303 0.6474 -1.0517 43 1 5.9216 1.7525 -3.9725 44 1 6.8684 3.2242 -4.2992 45 1 4.6721 3.6934 -3.1544 46 1 6.0801 4.2454 -2.2134 47 1 9.3377 0.7116 -3.0292 48 1 8.0136 0.5026 -4.2040 49 1 9.3040 -1.2481 -5.9521 50 1 10.7588 3.0720 -3.3766 51 1 10.1627 4.0653 -4.7315 52 1 9.3619 4.8462 -2.4524 53 1 8.0462 4.4590 -3.5883 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717345377.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:57 Heat of formation + Delta-G solvation = -117.530760 kcal Electronic energy + Delta-G solvation = -32542.797247 eV Core-core repulsion = 28414.738472 eV Total energy + Delta-G solvation = -4128.058775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.82124 -40.56915 -38.84065 -37.46322 -36.18591 -34.91517 -33.60868 -33.17259 -32.20136 -31.86175 -29.88626 -28.68685 -27.75966 -25.31587 -24.79517 -24.24710 -23.69797 -23.05501 -22.17991 -20.89167 -19.99581 -18.82791 -18.55652 -17.90704 -17.23633 -16.99305 -16.79762 -16.37345 -16.19089 -15.86178 -15.82923 -15.38473 -15.34286 -15.16664 -14.94916 -14.83192 -14.59621 -14.33702 -13.82259 -13.48823 -13.36856 -13.30022 -13.21812 -13.15560 -13.08223 -12.82216 -12.76452 -12.71033 -12.41532 -12.30382 -12.21519 -12.21118 -12.13498 -12.09037 -11.77555 -11.70487 -11.60554 -11.16217 -10.91640 -10.70409 -10.45167 -10.27730 -9.68602 -8.68724 -7.89611 -5.35460 1.43308 1.45740 1.50450 1.51551 1.76923 2.46060 2.76146 2.90710 3.23633 3.39142 3.53482 3.76317 3.83631 3.87437 3.92414 4.00177 4.09540 4.17931 4.28197 4.30920 4.31441 4.36522 4.45171 4.47235 4.48153 4.54164 4.58137 4.69071 4.71457 4.79716 4.81808 4.85940 4.91465 4.96051 4.99461 5.02229 5.09124 5.12078 5.15415 5.17930 5.26930 5.28164 5.33425 5.42526 5.49154 5.56962 5.63792 6.10271 6.30450 6.40041 6.44524 7.08807 7.10197 7.78220 8.30717 9.14830 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.003231 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.823920 B = 8664.713337 C = 9565.347450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.381 6.381 4 C 0.079 3.921 5 H 0.111 0.889 6 C -0.134 4.134 7 C -0.147 4.147 8 C 0.498 3.502 9 O -0.579 6.579 10 N -0.601 5.601 11 C 0.113 3.887 12 C -0.116 4.116 13 C 0.106 3.894 14 C -0.134 4.134 15 C 0.127 3.873 16 C 0.167 3.833 17 N -0.611 5.611 18 C -0.260 4.260 19 H 0.068 0.932 20 C -0.047 4.047 21 N -0.932 5.932 22 Si 0.961 3.039 23 H -0.276 1.276 24 H -0.293 1.293 25 H -0.281 1.281 26 C 0.104 3.896 27 C 0.052 3.948 28 O -0.376 6.376 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.079 0.921 47 H -0.002 1.002 48 H 0.061 0.939 49 H 0.250 0.750 50 H 0.017 0.983 51 H 0.065 0.935 52 H 0.117 0.883 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.330 1.597 17.723 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.300 6.300 4 C 0.018 3.982 5 H 0.128 0.872 6 C -0.172 4.172 7 C -0.204 4.204 8 C 0.286 3.714 9 O -0.459 6.459 10 N -0.335 5.335 11 C -0.009 4.009 12 C -0.155 4.155 13 C 0.066 3.934 14 C -0.172 4.172 15 C 0.005 3.995 16 C 0.041 3.959 17 N -0.335 5.335 18 C -0.390 4.390 19 H 0.085 0.915 20 C -0.243 4.243 21 N -0.579 5.579 22 Si 0.790 3.210 23 H -0.202 1.202 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.021 4.021 27 C -0.025 4.025 28 O -0.296 6.296 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.134 0.866 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.016 0.984 48 H 0.080 0.920 49 H 0.059 0.941 50 H 0.035 0.965 51 H 0.084 0.916 52 H 0.135 0.865 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.872 1.896 17.521 20.707 hybrid contribution 0.332 -0.566 -2.081 2.183 sum -10.539 1.330 15.440 18.741 Atomic orbital electron populations 1.21749 0.92930 1.03417 1.02496 1.22891 0.96592 0.82535 1.01075 1.87998 1.19142 1.28280 1.94560 1.22118 0.83541 0.99333 0.93240 0.87188 1.22036 1.02527 1.00240 0.92395 1.21752 1.02184 0.99084 0.97357 1.21569 0.81808 0.82189 0.85793 1.90658 1.51201 1.50617 1.53393 1.48197 1.05549 1.47848 1.31872 1.22068 0.88611 0.97249 0.92932 1.21875 0.99881 0.96983 0.96714 1.21928 0.90429 0.88021 0.93070 1.22145 0.96401 1.00336 0.98351 1.21385 0.97706 0.92904 0.87540 1.21192 0.93007 0.91267 0.90438 1.44308 1.62653 1.23800 1.02783 1.19444 1.44731 0.91735 0.83045 0.91468 1.25683 1.01543 0.95825 1.01213 1.70141 1.53482 0.97821 1.36407 0.85433 0.78394 0.76321 0.80882 1.20157 1.21939 1.20776 1.21779 0.94483 0.89703 0.96142 1.23042 0.96260 0.90889 0.92332 1.87771 1.72243 1.36010 1.33530 0.91589 0.93515 0.88801 0.93709 0.90534 0.88287 0.91872 0.91141 0.90778 0.92701 0.88963 0.86552 0.90744 0.88738 0.93242 0.91128 0.91138 0.90240 0.98355 0.92040 0.94085 0.96488 0.91607 0.86516 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 10.28 71.98 0.74 -1.61 16 2 C 0.05 0.80 6.35 71.98 0.46 1.26 16 3 O -0.38 -9.48 9.19 -129.99 -1.19 -10.68 16 4 C 0.08 1.70 1.81 29.85 0.05 1.75 16 5 H 0.11 1.83 6.91 -2.39 -0.02 1.82 16 6 C -0.13 -2.15 5.16 30.59 0.16 -1.99 16 7 C -0.15 -1.63 9.54 71.98 0.69 -0.95 16 8 C 0.50 14.87 7.12 87.66 0.62 15.49 16 9 O -0.58 -22.89 15.92 15.94 0.25 -22.64 16 10 N -0.60 -16.40 2.97 -818.81 -2.43 -18.84 16 11 C 0.11 2.39 4.64 86.36 0.40 2.79 16 12 C -0.12 -3.18 5.10 30.66 0.16 -3.02 16 13 C 0.11 3.75 0.68 -10.71 -0.01 3.74 16 14 C -0.13 -4.78 4.33 30.67 0.13 -4.65 16 15 C 0.13 3.95 6.20 86.37 0.54 4.48 16 16 C 0.17 7.74 4.10 86.34 0.35 8.10 16 17 N -0.61 -29.82 2.56 -697.61 -1.78 -31.61 16 18 C -0.26 -13.98 9.66 84.03 0.81 -13.16 16 19 H 0.07 3.53 7.88 -2.91 -0.02 3.51 16 20 C -0.05 -2.59 4.97 84.86 0.42 -2.17 16 21 N -0.93 -53.93 11.06 21.65 0.24 -53.69 16 22 Si 0.96 44.62 29.58 68.60 2.03 46.65 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 C 0.10 4.16 6.74 86.36 0.58 4.74 16 27 C 0.05 1.67 6.60 72.08 0.48 2.15 16 28 O -0.38 -12.49 9.00 -148.98 -1.34 -13.84 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.95 7.63 -2.38 -0.02 0.94 16 34 H 0.10 1.31 5.43 -2.38 -0.01 1.30 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.05 0.69 7.70 -2.38 -0.02 0.67 16 39 H 0.09 1.82 7.81 -2.39 -0.02 1.81 16 40 H 0.12 1.67 4.76 -2.39 -0.01 1.66 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 44 H 0.07 2.78 6.16 -2.39 -0.01 2.77 16 45 H 0.07 2.42 7.01 -2.38 -0.02 2.40 16 46 H 0.08 2.29 7.83 -2.39 -0.02 2.27 16 47 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.06 3.26 6.08 -2.39 -0.01 3.24 16 49 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 50 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.07 2.50 7.96 -2.39 -0.02 2.48 16 52 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 53 H 0.05 1.57 6.29 -2.39 -0.02 1.55 16 Total: -1.00 -72.07 398.48 3.23 -68.83 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.88 Total: 18.84 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 6.58 Total: 16.95 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -3.98 Total: -104.13 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -2.28 Total: -47.15 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -72.07 3.23 -68.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717345377.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.699 kcal (2) G-P(sol) polarization free energy of solvation -72.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds