Wall clock time and date at job start Sat Apr 11 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47363 * 2 1 4 4 N 1.46500 * 109.47352 * 179.97438 * 3 2 1 5 5 C 1.34784 * 119.99778 * 89.99719 * 4 3 2 6 6 O 1.21280 * 119.99468 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.99949 * 0.02562 * 5 4 3 8 8 O 1.42903 * 109.46958 * 179.97438 * 7 5 4 9 9 C 1.42894 * 114.00223 * 180.02562 * 8 7 5 10 10 H 1.09004 * 110.56334 * 328.77879 * 9 8 7 11 11 C 1.54512 * 110.51238 * 206.10270 * 9 8 7 12 12 C 1.54479 * 104.05806 * 241.35278 * 11 9 8 13 13 O 1.44687 * 104.84088 * 23.98047 * 12 11 9 14 14 C 1.44426 * 105.13825 * 319.51248 * 13 12 11 15 15 C 1.46496 * 120.00137 * 269.99771 * 4 3 2 16 16 C 1.53044 * 109.46131 * 240.02846 * 15 4 3 17 17 C 1.53186 * 109.31229 * 178.59909 * 16 15 4 18 18 N 1.46936 * 108.76483 * 54.65558 * 17 16 15 19 19 C 1.36935 * 120.62874 * 126.40325 * 18 17 16 20 20 H 1.07995 * 120.00085 * 331.81110 * 19 18 17 21 21 C 1.38818 * 119.99678 * 151.80810 * 19 18 17 22 22 N 1.31619 * 120.00116 * 343.08354 * 21 19 18 23 23 Si 1.86797 * 119.99890 * 163.07811 * 21 19 18 24 24 H 1.48500 * 109.46833 * 90.00254 * 23 21 19 25 25 H 1.48498 * 109.47326 * 210.00258 * 23 21 19 26 26 H 1.48503 * 109.47106 * 330.00408 * 23 21 19 27 27 C 1.46920 * 118.73702 * 306.38084 * 18 17 16 28 28 C 1.53037 * 109.45966 * 119.97045 * 15 4 3 29 29 H 1.09006 * 109.46962 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46712 * 300.00395 * 1 2 3 31 31 H 1.09000 * 109.46492 * 60.00298 * 1 2 3 32 32 H 1.08997 * 109.47200 * 239.99417 * 2 1 3 33 33 H 1.08999 * 109.47230 * 119.99618 * 2 1 3 34 34 H 1.08997 * 109.47438 * 59.99563 * 3 2 1 35 35 H 1.09007 * 109.46887 * 299.99712 * 3 2 1 36 36 H 1.09001 * 109.47101 * 60.00331 * 7 5 4 37 37 H 1.08991 * 109.47392 * 300.00076 * 7 5 4 38 38 H 1.08997 * 110.51007 * 359.97438 * 11 9 8 39 39 H 1.08993 * 110.51202 * 122.57059 * 11 9 8 40 40 H 1.09007 * 110.36989 * 142.80748 * 12 11 9 41 41 H 1.09002 * 110.37174 * 265.03067 * 12 11 9 42 42 H 1.08991 * 110.37449 * 281.61327 * 14 13 12 43 43 H 1.08996 * 110.37053 * 159.38023 * 14 13 12 44 44 H 1.09001 * 109.45702 * 359.97438 * 15 4 3 45 45 H 1.09002 * 109.49397 * 298.56708 * 16 15 4 46 46 H 1.08999 * 109.49525 * 58.65872 * 16 15 4 47 47 H 1.09002 * 109.60198 * 294.87056 * 17 16 15 48 48 H 1.08998 * 109.70431 * 174.50278 * 17 16 15 49 49 H 0.96995 * 120.00031 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.59029 * 293.82238 * 27 18 17 51 51 H 1.08999 * 109.58828 * 173.39721 * 27 18 17 52 52 H 1.08998 * 109.50007 * 301.33865 * 28 15 4 53 53 H 1.09005 * 109.49621 * 61.44042 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1794 1.4422 -1.1664 6 8 5.3922 1.4417 -1.1658 7 6 3.4264 1.4425 -2.4718 8 8 4.3555 1.4428 -3.5576 9 6 3.7415 1.4437 -4.8479 10 1 2.7888 0.9150 -4.8189 11 6 4.6822 0.8072 -5.8955 12 6 4.9403 1.9448 -6.9083 13 8 4.7045 3.1634 -6.1648 14 6 3.5426 2.8904 -5.3517 15 6 4.2371 1.4427 1.2696 16 6 5.1163 2.6927 1.3509 17 6 5.8533 2.7073 2.6937 18 7 6.5868 1.4431 2.8440 19 6 7.9283 1.4433 3.1191 20 1 8.5459 2.2677 2.7948 21 6 8.4942 0.3837 3.8149 22 7 7.7269 -0.4426 4.4936 23 14 10.3448 0.1307 3.7876 24 1 10.9629 0.8759 4.9136 25 1 10.6486 -1.3163 3.9257 26 1 10.8940 0.6313 2.5019 27 6 5.8536 0.1788 2.6941 28 6 5.1162 0.1927 1.3513 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6768 1.9563 -0.8901 36 1 2.8002 2.3328 -2.5297 37 1 2.7995 0.5529 -2.5298 38 1 5.6157 0.4923 -5.4292 39 1 4.1954 -0.0375 -6.3827 40 1 5.9705 1.9104 -7.2631 41 1 4.2482 1.8703 -7.7471 42 1 2.6349 2.9621 -5.9507 43 1 3.4971 3.5821 -4.5106 44 1 3.5282 1.4433 2.0976 45 1 5.8418 2.6807 0.5374 46 1 4.4920 3.5825 1.2690 47 1 5.1328 2.8104 3.5051 48 1 6.5542 3.5416 2.7192 49 1 8.1224 -1.1832 4.9795 50 1 5.1331 0.0757 3.5054 51 1 6.5548 -0.6553 2.7172 52 1 4.4920 -0.6971 1.2698 53 1 5.8418 0.2045 0.5379 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731386592.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:05 Heat of formation + Delta-G solvation = -123.518735 kcal Electronic energy + Delta-G solvation = -31568.250078 eV Core-core repulsion = 27439.931645 eV Total energy + Delta-G solvation = -4128.318433 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.48795 -40.52464 -38.84170 -37.76498 -37.14816 -34.94548 -33.43255 -32.52952 -31.89453 -31.37401 -29.80508 -28.76117 -27.30414 -26.29840 -24.10155 -23.90041 -23.62954 -22.60774 -22.17478 -21.20897 -20.03448 -18.89593 -18.35126 -17.84096 -17.43315 -17.11490 -16.94936 -16.55729 -16.44100 -15.95702 -15.62531 -15.44964 -15.34444 -15.19862 -15.12164 -14.78162 -14.36610 -14.18021 -13.99229 -13.70310 -13.57957 -13.27061 -13.08378 -13.01263 -12.92891 -12.73662 -12.70888 -12.63021 -12.58632 -12.40824 -12.22352 -12.17541 -12.00636 -11.81678 -11.74690 -11.61996 -11.39964 -11.23704 -11.05108 -10.62238 -10.44578 -10.38468 -9.56963 -8.69743 -7.90666 -5.34540 1.41318 1.43790 1.54374 1.64062 1.74049 2.48599 2.78336 3.01057 3.24402 3.46084 3.61657 3.66966 3.86041 3.91956 4.02012 4.02837 4.06465 4.12686 4.17232 4.20656 4.29412 4.34260 4.44491 4.45913 4.49923 4.51246 4.61554 4.66811 4.71943 4.73560 4.79636 4.81320 4.86997 4.88340 4.94241 5.00251 5.06687 5.07240 5.14829 5.25744 5.31402 5.42216 5.48645 5.50726 5.60915 5.64986 5.74317 5.78335 6.16567 6.37174 6.53346 7.12643 7.29450 7.83951 8.34733 9.15923 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010580 B = 0.003091 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.799023 B = 9056.500062 C =10811.589730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.143 4.143 3 C 0.100 3.900 4 N -0.604 5.604 5 C 0.499 3.501 6 O -0.563 6.563 7 C 0.049 3.951 8 O -0.387 6.387 9 C 0.048 3.952 10 H 0.116 0.884 11 C -0.155 4.155 12 C 0.041 3.959 13 O -0.407 6.407 14 C 0.020 3.980 15 C 0.171 3.829 16 C -0.134 4.134 17 C 0.147 3.853 18 N -0.610 5.610 19 C -0.265 4.265 20 H 0.057 0.943 21 C -0.048 4.048 22 N -0.931 5.931 23 Si 0.964 3.036 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.279 1.279 27 C 0.185 3.815 28 C -0.137 4.137 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.047 0.953 46 H 0.078 0.922 47 H 0.028 0.972 48 H 0.048 0.952 49 H 0.251 0.749 50 H 0.008 0.992 51 H 0.048 0.952 52 H 0.059 0.941 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.368 2.474 -20.342 30.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 C -0.021 4.021 4 N -0.337 5.337 5 C 0.287 3.713 6 O -0.440 6.440 7 C -0.030 4.030 8 O -0.306 6.306 9 C -0.010 4.010 10 H 0.134 0.866 11 C -0.193 4.193 12 C -0.035 4.035 13 O -0.327 6.327 14 C -0.057 4.057 15 C 0.068 3.932 16 C -0.174 4.174 17 C 0.022 3.978 18 N -0.334 5.334 19 C -0.395 4.395 20 H 0.075 0.925 21 C -0.244 4.244 22 N -0.577 5.577 23 Si 0.792 3.208 24 H -0.204 1.204 25 H -0.214 1.214 26 H -0.205 1.205 27 C 0.059 3.941 28 C -0.177 4.177 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.136 0.864 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.115 0.885 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.046 0.954 48 H 0.067 0.933 49 H 0.060 0.940 50 H 0.026 0.974 51 H 0.067 0.933 52 H 0.078 0.922 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -21.361 2.563 -20.237 29.536 hybrid contribution 1.244 -0.593 0.544 1.482 sum -20.117 1.970 -19.693 28.220 Atomic orbital electron populations 1.21668 0.93104 1.02391 1.02976 1.21972 0.97624 0.96503 1.02093 1.22074 0.76725 0.97879 1.05435 1.48235 1.07937 1.72982 1.04563 1.21000 0.87833 0.76133 0.86284 1.90753 1.16404 1.49304 1.87581 1.22491 0.91473 1.04844 0.84181 1.88141 1.33406 1.95090 1.13949 1.23874 0.98002 0.96425 0.82674 0.86637 1.23120 1.00740 0.99749 0.95672 1.23647 1.03030 0.82383 0.94424 1.89195 1.48430 1.36002 1.59041 1.24152 0.89615 0.96503 0.95443 1.20795 0.93019 0.94351 0.84991 1.22239 0.98979 0.97444 0.98692 1.20982 0.94231 0.88317 0.94316 1.44267 1.05685 1.01185 1.82257 1.19433 0.84903 1.06724 1.28443 0.92549 1.25738 1.01924 0.99785 0.96928 1.70155 1.35453 1.18620 1.33498 0.85332 0.80750 0.76872 0.77861 1.20433 1.21367 1.20479 1.20491 0.93106 0.88997 0.91510 1.22335 0.98739 0.97246 0.99333 0.92506 0.92124 0.90788 0.92004 0.93228 0.88743 0.87505 0.87314 0.87387 0.91796 0.86442 0.89082 0.89245 0.88184 0.89525 0.88452 0.93386 0.90391 0.95374 0.93305 0.93988 0.97402 0.93328 0.92197 0.93759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.91 71.98 0.71 -0.58 16 2 C -0.14 -2.03 6.26 30.59 0.19 -1.84 16 3 C 0.10 1.48 5.18 86.38 0.45 1.93 16 4 N -0.60 -15.86 2.42 -797.68 -1.93 -17.80 16 5 C 0.50 15.39 7.17 87.66 0.63 16.02 16 6 O -0.56 -24.86 12.74 16.01 0.20 -24.65 16 7 C 0.05 0.97 4.83 71.24 0.34 1.31 16 8 O -0.39 -10.04 9.51 -129.94 -1.24 -11.27 16 9 C 0.05 0.76 3.57 31.61 0.11 0.88 16 10 H 0.12 0.92 7.87 -2.38 -0.02 0.90 16 11 C -0.16 -2.42 6.90 31.61 0.22 -2.20 16 12 C 0.04 0.64 7.63 72.48 0.55 1.19 16 13 O -0.41 -9.30 11.67 -148.98 -1.74 -11.04 16 14 C 0.02 0.31 7.37 72.48 0.53 0.84 16 15 C 0.17 5.87 2.51 45.02 0.11 5.98 16 16 C -0.13 -5.15 5.27 30.67 0.16 -4.99 16 17 C 0.15 6.63 6.52 86.36 0.56 7.19 16 18 N -0.61 -33.46 2.99 -699.10 -2.09 -35.55 16 19 C -0.26 -15.94 9.58 84.04 0.81 -15.14 16 20 H 0.06 3.39 7.88 -2.91 -0.02 3.36 16 21 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 22 N -0.93 -57.47 11.20 21.65 0.24 -57.23 16 23 Si 0.96 48.14 29.59 68.60 2.03 50.17 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 26 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 27 C 0.19 9.62 5.30 86.37 0.46 10.08 16 28 C -0.14 -5.85 5.27 30.67 0.16 -5.69 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.88 7.22 -2.39 -0.02 0.87 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.22 7.92 -2.39 -0.02 1.21 16 35 H 0.11 0.89 6.44 -2.38 -0.02 0.88 16 36 H 0.11 1.36 7.40 -2.39 -0.02 1.34 16 37 H 0.11 1.42 7.15 -2.39 -0.02 1.41 16 38 H 0.06 1.39 8.00 -2.39 -0.02 1.37 16 39 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.09 1.49 8.09 -2.39 -0.02 1.47 16 44 H 0.10 2.98 7.79 -2.39 -0.02 2.96 16 45 H 0.05 2.22 6.21 -2.39 -0.01 2.21 16 46 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.05 2.20 7.93 -2.39 -0.02 2.18 16 49 H 0.25 14.89 8.31 -92.71 -0.77 14.11 16 50 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 51 H 0.05 2.88 6.06 -2.39 -0.01 2.87 16 52 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 53 H 0.04 2.23 6.21 -2.38 -0.01 2.21 16 Total: -1.00 -84.75 407.83 2.77 -81.98 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.87 Total: 12.86 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 6.42 Total: 12.53 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -3.78 Total: -110.58 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -2.77 Total: -46.96 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -84.75 2.77 -81.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731386592.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.536 kcal (2) G-P(sol) polarization free energy of solvation -84.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds