Wall clock time and date at job start Sat Apr 11 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47137 * 2 1 4 4 O 1.42896 * 109.47212 * 120.00318 * 2 1 3 5 5 C 1.42904 * 114.00016 * 99.90840 * 4 2 1 6 6 C 1.53002 * 110.75079 * 294.21408 * 5 4 2 7 7 N 1.46509 * 109.46648 * 71.15310 * 6 5 4 8 8 C 1.34777 * 119.99511 * 188.15947 * 7 6 5 9 9 O 1.21584 * 120.00119 * 5.30320 * 8 7 6 10 10 N 1.34778 * 119.99550 * 185.29475 * 8 7 6 11 11 C 1.46931 * 120.62762 * 174.91514 * 10 8 7 12 12 C 1.53163 * 108.76896 * 233.59005 * 11 10 8 13 13 C 1.53040 * 109.32945 * 305.35706 * 12 11 10 14 14 C 1.53037 * 109.52529 * 61.37190 * 13 12 11 15 15 H 1.08999 * 109.49998 * 58.59194 * 14 13 12 16 16 C 1.50696 * 109.50040 * 178.65886 * 14 13 12 17 17 H 1.08001 * 119.99800 * 0.48946 * 16 14 13 18 18 C 1.37880 * 120.00251 * 180.49005 * 16 14 13 19 19 N 1.31509 * 119.99978 * 7.23806 * 18 16 14 20 20 Si 1.86803 * 119.99934 * 187.23187 * 18 16 14 21 21 H 1.48498 * 109.47093 * 94.99539 * 20 18 16 22 22 H 1.48493 * 109.47225 * 214.99829 * 20 18 16 23 23 H 1.48503 * 109.47021 * 334.99615 * 20 18 16 24 24 C 1.46914 * 120.63254 * 354.89948 * 10 8 7 25 25 C 1.55306 * 111.02191 * 170.62342 * 5 4 2 26 26 C 1.54953 * 100.93923 * 275.86126 * 25 5 4 27 27 O 1.43643 * 105.13351 * 323.55530 * 26 25 5 28 28 C 1.43232 * 109.97297 * 24.42953 * 27 26 25 29 29 H 1.08998 * 109.47139 * 66.71757 * 1 2 3 30 30 H 1.08998 * 109.46831 * 186.72173 * 1 2 3 31 31 H 1.09001 * 109.46852 * 306.71470 * 1 2 3 32 32 H 1.09007 * 109.47170 * 240.00081 * 2 1 3 33 33 H 1.09005 * 109.46944 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47449 * 300.00202 * 3 2 1 35 35 H 1.08999 * 109.47209 * 60.00839 * 3 2 1 36 36 H 1.09001 * 109.47081 * 311.15660 * 6 5 4 37 37 H 1.08998 * 109.47442 * 191.14987 * 6 5 4 38 38 H 0.96995 * 120.00288 * 8.15409 * 7 6 5 39 39 H 1.08998 * 109.58912 * 353.37985 * 11 10 8 40 40 H 1.09002 * 109.58325 * 113.80393 * 11 10 8 41 41 H 1.08998 * 109.47939 * 185.41026 * 12 11 10 42 42 H 1.09004 * 109.49809 * 65.32194 * 12 11 10 43 43 H 1.09003 * 109.45839 * 301.36172 * 13 12 11 44 44 H 1.08999 * 109.46320 * 181.38331 * 13 12 11 45 45 H 0.97002 * 119.99610 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.58964 * 6.62248 * 24 10 8 47 47 H 1.09000 * 109.59153 * 246.19617 * 24 10 8 48 48 H 1.08996 * 111.12980 * 33.78061 * 25 5 4 49 49 H 1.08998 * 111.12307 * 157.94620 * 25 5 4 50 50 H 1.08998 * 110.30551 * 204.64022 * 26 25 5 51 51 H 1.09002 * 110.39194 * 82.51546 * 26 25 5 52 52 H 1.08997 * 109.83049 * 238.76657 * 28 27 26 53 53 H 1.09000 * 109.82990 * 117.80109 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.4119 -2.0239 0.9333 6 6 1.2138 -2.8889 0.5365 7 7 0.7773 -2.5280 -0.8147 8 6 -0.3642 -3.0421 -1.3138 9 8 -1.0808 -3.7277 -0.6104 10 7 -0.7115 -2.7960 -2.5926 11 6 -1.8930 -3.4384 -3.1843 12 6 -1.4748 -4.1425 -4.4786 13 6 -0.7785 -3.1380 -5.3996 14 6 0.4799 -2.6019 -4.7133 15 1 1.1468 -3.4311 -4.4770 16 6 1.1829 -1.6378 -5.6337 17 1 0.7691 -1.4220 -6.6077 18 6 2.3543 -1.0312 -5.2325 19 7 2.9339 -1.3981 -4.1105 20 14 3.1180 0.3117 -6.2827 21 1 2.6759 1.6397 -5.7866 22 1 4.5980 0.2210 -6.2029 23 1 2.6871 0.1418 -7.6937 24 6 0.0841 -1.8801 -3.4213 25 6 3.1305 -2.6128 2.1778 26 6 4.5750 -2.0984 1.9541 27 8 4.7770 -2.1544 0.5330 28 6 3.5163 -2.0877 -0.1434 29 1 -0.3633 0.4062 -0.9440 30 1 -0.3633 -1.0206 0.1203 31 1 -0.3633 0.6144 0.8238 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 0.3970 -2.7225 1.2388 37 1 1.5019 -3.9399 0.5566 38 1 1.3097 -1.9190 -1.3499 39 1 -2.2999 -4.1693 -2.4856 40 1 -2.6468 -2.6830 -3.4064 41 1 -2.3582 -4.5414 -4.9772 42 1 -0.7896 -4.9573 -4.2445 43 1 -1.4558 -2.3112 -5.6132 44 1 -0.5018 -3.6310 -6.3315 45 1 3.7578 -0.9710 -3.8281 46 1 0.9817 -1.5829 -2.8790 47 1 -0.5085 -0.9977 -3.6627 48 1 2.7097 -2.2130 3.1004 49 1 3.0962 -3.7022 2.1724 50 1 5.2898 -2.7446 2.4636 51 1 4.6723 -1.0728 2.3100 52 1 3.3803 -2.9758 -0.7605 53 1 3.4776 -1.1939 -0.7661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925765605.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:10 Heat of formation + Delta-G solvation = -125.952356 kcal Electronic energy + Delta-G solvation = -33701.296068 eV Core-core repulsion = 29572.872105 eV Total energy + Delta-G solvation = -4128.423963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.05652 -40.88033 -38.73127 -38.36614 -35.80569 -35.03019 -34.41807 -33.39577 -31.92341 -31.52650 -30.14660 -28.21135 -27.31990 -26.91721 -25.78551 -23.97183 -23.27409 -22.51730 -21.71193 -21.50869 -20.20573 -19.07749 -18.60071 -18.22969 -17.33893 -17.11705 -16.84744 -16.50022 -16.30579 -16.25845 -15.81119 -15.53406 -15.27748 -15.09423 -15.05868 -14.62240 -14.41919 -14.34114 -14.09328 -13.90335 -13.70796 -13.47188 -13.33129 -13.23449 -13.05374 -12.86283 -12.75666 -12.63845 -12.42315 -12.29587 -12.26099 -12.13738 -12.02821 -11.87170 -11.67289 -11.62127 -11.31884 -10.90892 -10.86009 -10.70786 -10.57710 -10.46818 -10.14178 -9.29371 -8.13359 -6.21281 1.41862 1.47225 1.53867 1.73988 2.16388 2.36250 2.43945 2.79531 2.87482 3.19201 3.28995 3.51871 3.66319 3.85348 4.03419 4.09307 4.14875 4.16722 4.17396 4.25588 4.28124 4.32619 4.43504 4.57922 4.58432 4.65624 4.67004 4.67562 4.79520 4.80374 4.81691 4.83319 4.85395 4.88131 4.92041 5.03419 5.04367 5.11988 5.17622 5.23669 5.27217 5.28254 5.44834 5.57471 5.60270 5.83981 5.91839 5.92894 6.04632 6.09890 6.34115 6.84779 6.95734 7.45956 7.56942 8.92852 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009319 B = 0.005373 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.887940 B = 5210.223366 C = 6799.890167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.075 3.925 3 C -0.147 4.147 4 O -0.359 6.359 5 C 0.076 3.924 6 C 0.126 3.874 7 N -0.745 5.745 8 C 0.704 3.296 9 O -0.635 6.635 10 N -0.626 5.626 11 C 0.128 3.872 12 C -0.124 4.124 13 C -0.105 4.105 14 C 0.037 3.963 15 H -0.006 1.006 16 C -0.530 4.530 17 H 0.055 0.945 18 C 0.029 3.971 19 N -0.905 5.905 20 Si 0.941 3.059 21 H -0.274 1.274 22 H -0.290 1.290 23 H -0.273 1.273 24 C 0.130 3.870 25 C -0.127 4.127 26 C 0.046 3.954 27 O -0.398 6.398 28 C 0.034 3.966 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.405 0.595 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.262 0.738 46 H 0.080 0.920 47 H 0.047 0.953 48 H 0.116 0.884 49 H 0.112 0.888 50 H 0.112 0.888 51 H 0.067 0.933 52 H 0.068 0.932 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.966 1.169 10.959 11.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.017 3.983 3 C -0.204 4.204 4 O -0.279 6.279 5 C 0.036 3.964 6 C 0.001 3.999 7 N -0.407 5.407 8 C 0.405 3.595 9 O -0.518 6.518 10 N -0.362 5.362 11 C 0.006 3.994 12 C -0.162 4.162 13 C -0.142 4.142 14 C 0.018 3.982 15 H 0.013 0.987 16 C -0.569 4.569 17 H 0.074 0.926 18 C -0.171 4.171 19 N -0.544 5.544 20 Si 0.768 3.232 21 H -0.199 1.199 22 H -0.216 1.216 23 H -0.198 1.198 24 C 0.007 3.993 25 C -0.165 4.165 26 C -0.029 4.029 27 O -0.318 6.318 28 C -0.043 4.043 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.247 0.753 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.065 0.935 48 H 0.135 0.865 49 H 0.130 0.870 50 H 0.130 0.870 51 H 0.085 0.915 52 H 0.086 0.914 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.099 0.794 11.628 11.843 hybrid contribution 0.746 0.876 -1.354 1.777 sum -1.353 1.670 10.274 10.496 Atomic orbital electron populations 1.22385 0.95065 1.02873 1.02284 1.22244 0.94228 0.94161 0.87620 1.21902 1.01487 0.93724 1.03281 1.87948 1.83199 1.23355 1.33351 1.23288 0.92367 0.83777 0.97016 1.21744 0.96402 0.98744 0.82964 1.45805 1.24869 1.52225 1.17764 1.15953 0.81566 0.79854 0.82097 1.90793 1.54747 1.46636 1.59644 1.47640 1.30299 1.48410 1.09840 1.21528 0.86171 0.97050 0.94677 1.21891 1.00973 0.97819 0.95519 1.21510 0.97050 0.97907 0.97755 1.18897 0.92635 0.94389 0.92280 0.98736 1.21397 1.07801 1.25727 1.01965 0.92645 1.25529 0.96833 0.98383 0.96384 1.69960 1.18876 1.41902 1.23619 0.85804 0.77354 0.80438 0.79638 1.19940 1.21627 1.19786 1.21784 0.93329 0.90906 0.93251 1.23316 0.94053 1.02364 0.96753 1.23636 0.96715 1.01906 0.80654 1.88411 1.28069 1.95481 1.19836 1.23704 0.83630 1.01939 0.95064 0.92261 0.92495 0.91098 0.93263 0.92393 0.90776 0.90556 0.90117 0.90642 0.75341 0.90103 0.90695 0.88553 0.93647 0.92286 0.93118 0.92925 0.90205 0.93509 0.86522 0.86994 0.86982 0.91458 0.91427 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.92 8.82 71.98 0.63 -4.29 16 2 C 0.07 2.21 2.18 30.59 0.07 2.28 16 3 C -0.15 -3.76 9.56 71.98 0.69 -3.07 16 4 O -0.36 -10.18 9.76 -148.98 -1.45 -11.63 16 5 C 0.08 2.07 0.86 -9.53 -0.01 2.06 16 6 C 0.13 3.81 4.14 86.38 0.36 4.16 16 7 N -0.75 -26.72 2.78 -478.51 -1.33 -28.05 16 8 C 0.70 28.23 7.41 179.05 1.33 29.56 16 9 O -0.63 -27.74 15.71 -3.98 -0.06 -27.80 16 10 N -0.63 -24.47 2.97 -836.96 -2.49 -26.95 16 11 C 0.13 4.32 6.42 86.35 0.55 4.87 16 12 C -0.12 -3.98 6.08 30.66 0.19 -3.79 16 13 C -0.10 -3.93 5.11 30.62 0.16 -3.77 16 14 C 0.04 1.71 2.18 -11.46 -0.03 1.68 16 15 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 16 C -0.53 -26.47 8.55 25.60 0.22 -26.25 16 17 H 0.06 2.75 7.75 -2.91 -0.02 2.73 16 18 C 0.03 1.45 5.23 84.66 0.44 1.89 16 19 N -0.90 -46.10 11.76 21.45 0.25 -45.85 16 20 Si 0.94 40.36 29.54 68.60 2.03 42.39 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 C 0.13 5.51 5.42 86.37 0.47 5.97 16 25 C -0.13 -2.51 6.35 32.05 0.20 -2.31 16 26 C 0.05 1.00 7.78 72.65 0.56 1.56 16 27 O -0.40 -12.38 11.36 -148.98 -1.69 -14.08 16 28 C 0.03 1.09 5.85 72.45 0.42 1.51 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.87 4.47 -2.39 -0.01 1.86 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 1.70 3.65 -2.38 -0.01 1.69 16 33 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 2.46 7.66 -2.39 -0.02 2.45 16 37 H 0.08 2.21 7.92 -2.39 -0.02 2.19 16 38 H 0.40 15.28 2.55 -92.71 -0.24 15.05 16 39 H 0.08 2.75 7.04 -2.39 -0.02 2.73 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.04 1.58 8.14 -2.38 -0.02 1.57 16 43 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.26 12.96 8.31 -92.71 -0.77 12.19 16 46 H 0.08 3.60 4.01 -2.39 -0.01 3.59 16 47 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.11 1.86 7.89 -2.39 -0.02 1.85 16 50 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.07 2.42 7.72 -2.39 -0.02 2.40 16 53 H 0.06 2.28 6.01 -2.39 -0.01 2.27 16 Total: -1.00 -59.22 394.27 2.18 -57.04 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: 0.66 Total: 42.85 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.26 Total: 12.08 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -3.57 Total: -100.85 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -3.21 Total: -53.51 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -59.22 2.18 -57.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925765605.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.909 kcal (2) G-P(sol) polarization free energy of solvation -59.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds