Wall clock time and date at job start Sat Apr 11 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47309 * 2 1 4 4 O 1.42896 * 109.47437 * 120.00319 * 2 1 3 5 5 C 1.42901 * 114.00382 * 149.99807 * 4 2 1 6 6 C 1.52995 * 109.47025 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46838 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47118 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99784 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99919 * 179.97438 * 8 7 6 11 11 C 1.47081 * 125.63277 * 0.04992 * 10 8 7 12 12 C 1.54466 * 107.29846 * 180.95714 * 11 10 8 13 13 C 1.54356 * 102.88004 * 21.49344 * 12 11 10 14 14 C 1.47568 * 125.62818 * 180.02562 * 10 8 7 15 15 C 1.52356 * 110.41910 * 207.65324 * 13 12 11 16 16 N 1.47323 * 108.46449 * 286.29243 * 15 13 12 17 17 C 1.36943 * 121.07683 * 130.84425 * 16 15 13 18 18 H 1.07998 * 119.99631 * 205.67039 * 17 16 15 19 19 C 1.38813 * 119.99783 * 25.66746 * 17 16 15 20 20 N 1.31618 * 120.00207 * 16.72045 * 19 17 16 21 21 Si 1.86800 * 119.99505 * 196.71408 * 19 17 16 22 22 H 1.48497 * 109.47460 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47192 * 120.00381 * 21 19 17 24 24 H 1.48499 * 109.47109 * 240.00106 * 21 19 17 25 25 C 1.47174 * 117.84653 * 310.85841 * 16 15 13 26 26 C 1.53282 * 108.51424 * 51.31692 * 25 16 15 27 27 O 1.41874 * 110.76119 * 83.66236 * 13 12 11 28 28 H 1.09003 * 109.46929 * 299.99968 * 1 2 3 29 29 H 1.08998 * 109.47421 * 59.99871 * 1 2 3 30 30 H 1.08997 * 109.47289 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46929 * 240.00032 * 2 1 3 32 32 H 1.09000 * 109.47272 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46984 * 300.00396 * 3 2 1 34 34 H 1.09003 * 109.47099 * 60.00136 * 3 2 1 35 35 H 1.09005 * 109.46497 * 59.99855 * 5 4 2 36 36 H 1.08998 * 109.46858 * 300.00229 * 5 4 2 37 37 H 1.08995 * 109.47362 * 60.00526 * 6 5 4 38 38 H 1.08998 * 109.47643 * 299.99937 * 6 5 4 39 39 H 1.09007 * 109.46779 * 60.00582 * 7 6 5 40 40 H 1.08995 * 109.47622 * 300.00280 * 7 6 5 41 41 H 1.08995 * 109.87785 * 300.38331 * 11 10 8 42 42 H 1.09001 * 109.87932 * 61.53394 * 11 10 8 43 43 H 1.09000 * 110.73242 * 263.14558 * 12 11 10 44 44 H 1.08997 * 110.72784 * 139.83589 * 12 11 10 45 45 H 1.09001 * 110.38078 * 37.89646 * 14 10 8 46 46 H 1.09008 * 110.47219 * 275.59781 * 14 10 8 47 47 H 1.09001 * 109.64343 * 166.59526 * 15 13 12 48 48 H 1.09004 * 109.63960 * 45.98148 * 15 13 12 49 49 H 0.97006 * 119.99776 * 180.02562 * 20 19 17 50 50 H 1.09003 * 109.62974 * 291.60798 * 25 16 15 51 51 H 1.08993 * 109.79181 * 171.11478 * 25 16 15 52 52 H 1.08994 * 109.51493 * 66.83905 * 26 25 16 53 53 H 1.09002 * 109.51252 * 186.99429 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9885 6 6 3.6760 -2.0081 2.2944 7 6 5.0244 -2.7055 2.1034 8 6 5.4287 -3.3784 3.3899 9 8 4.7089 -3.3075 4.3634 10 7 6.5895 -4.0597 3.4581 11 6 7.5522 -4.2247 2.3585 12 6 8.7120 -5.0953 2.8901 13 6 8.0723 -5.8249 4.0906 14 6 7.1047 -4.7630 4.6487 15 6 9.1335 -6.1768 5.1257 16 7 9.9359 -7.2988 4.6083 17 6 11.3045 -7.2539 4.6210 18 1 11.8704 -7.8341 3.9071 19 6 11.9644 -6.4627 5.5513 20 7 11.3235 -6.0216 6.6128 21 14 13.7623 -6.0242 5.2965 22 1 14.2482 -6.6402 4.0357 23 1 13.9050 -4.5483 5.2141 24 1 14.5631 -6.5359 6.4375 25 6 9.2190 -8.4693 4.0772 26 6 8.1829 -7.9839 3.0573 27 8 7.3643 -6.9765 3.6601 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 4.0199 -0.5873 0.7123 36 1 3.1808 -2.0707 0.1985 37 1 2.9222 -2.7452 2.5709 38 1 3.7613 -1.2617 3.0841 39 1 5.7785 -1.9687 1.8266 40 1 4.9388 -3.4520 1.3138 41 1 7.0712 -4.7221 1.5163 42 1 7.9316 -3.2509 2.0488 43 1 9.5444 -4.4718 3.2165 44 1 9.0368 -5.8093 2.1332 45 1 6.2883 -5.2407 5.1903 46 1 7.6370 -4.0699 5.3003 47 1 8.6522 -6.4701 6.0586 48 1 9.7776 -5.3144 5.2977 49 1 11.7846 -5.4684 7.2627 50 1 8.7153 -8.9905 4.8913 51 1 9.9234 -9.1439 3.5908 52 1 8.6938 -7.5667 2.1896 53 1 7.5589 -8.8215 2.7454 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330170264.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:21 Heat of formation + Delta-G solvation = -127.623180 kcal Electronic energy + Delta-G solvation = -30619.784206 eV Core-core repulsion = 26491.287791 eV Total energy + Delta-G solvation = -4128.496415 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.59907 -40.21142 -39.32068 -37.53567 -36.25546 -35.16856 -33.32259 -33.18776 -32.64326 -30.85963 -29.28386 -28.41130 -28.03982 -26.70645 -25.20527 -24.06547 -23.13217 -22.53042 -22.10832 -20.61203 -19.98774 -18.91007 -18.39072 -17.66345 -17.63108 -17.14514 -16.80169 -16.45882 -16.19536 -16.09657 -15.75754 -15.63477 -15.38314 -15.14156 -14.88167 -14.57532 -14.37928 -14.10181 -13.77233 -13.71011 -13.63885 -13.54108 -13.22624 -13.08891 -12.97868 -12.83565 -12.73994 -12.63780 -12.47377 -12.39629 -12.19723 -12.14038 -12.09678 -11.87956 -11.81960 -11.80277 -11.53478 -11.14973 -10.98802 -10.75434 -10.46817 -10.46131 -9.67739 -8.73281 -7.89152 -5.35346 1.46835 1.49636 1.59495 1.61635 1.89580 2.48681 2.72885 2.76501 3.24356 3.37776 3.57977 3.62904 3.92312 3.96423 3.98060 4.03198 4.15083 4.17766 4.24359 4.31427 4.31930 4.37084 4.39263 4.49055 4.52231 4.55241 4.59821 4.63553 4.68279 4.74258 4.76288 4.79218 4.89222 4.93331 4.94028 4.96606 5.05209 5.05919 5.11985 5.14574 5.22839 5.26594 5.29238 5.32872 5.35405 5.51040 5.62889 6.29598 6.39143 6.41879 6.53728 7.06785 7.12716 7.75711 8.30670 9.17394 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.002035 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.255363 B =13754.912121 C =14239.072772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.411 6.411 5 C 0.067 3.933 6 C -0.099 4.099 7 C -0.118 4.118 8 C 0.520 3.480 9 O -0.593 6.593 10 N -0.613 5.613 11 C 0.109 3.891 12 C -0.138 4.138 13 C 0.093 3.907 14 C 0.126 3.874 15 C 0.174 3.826 16 N -0.607 5.607 17 C -0.255 4.255 18 H 0.076 0.924 19 C -0.051 4.051 20 N -0.939 5.939 21 Si 0.967 3.033 22 H -0.262 1.262 23 H -0.289 1.289 24 H -0.298 1.298 25 C 0.102 3.898 26 C 0.053 3.947 27 O -0.383 6.383 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.061 0.939 46 H 0.075 0.925 47 H -0.012 1.012 48 H 0.072 0.928 49 H 0.250 0.750 50 H 0.010 0.990 51 H 0.076 0.924 52 H 0.064 0.936 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.960 10.172 -19.883 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.332 6.332 5 C -0.010 4.010 6 C -0.138 4.138 7 C -0.157 4.157 8 C 0.311 3.689 9 O -0.475 6.475 10 N -0.346 5.346 11 C -0.012 4.012 12 C -0.176 4.176 13 C 0.051 3.949 14 C 0.002 3.998 15 C 0.048 3.952 16 N -0.332 5.332 17 C -0.385 4.385 18 H 0.094 0.906 19 C -0.246 4.246 20 N -0.585 5.585 21 Si 0.796 3.204 22 H -0.186 1.186 23 H -0.216 1.216 24 H -0.226 1.226 25 C -0.024 4.024 26 C -0.024 4.024 27 O -0.303 6.303 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.112 0.888 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.006 0.994 48 H 0.090 0.910 49 H 0.059 0.941 50 H 0.028 0.972 51 H 0.094 0.906 52 H 0.082 0.918 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.621 10.303 -19.101 26.168 hybrid contribution 1.471 -0.086 0.984 1.772 sum -13.150 10.217 -18.117 24.608 Atomic orbital electron populations 1.21893 0.93282 1.02588 1.02989 1.22298 0.95472 0.92867 0.87878 1.22296 1.01604 0.96339 1.02870 1.87914 1.37480 1.70529 1.37265 1.22538 0.85543 0.96030 0.96858 1.21137 0.95702 0.99440 0.97473 1.21525 0.98641 1.01633 0.93930 1.21119 0.78666 0.77839 0.91287 1.90690 1.53076 1.63028 1.40660 1.48667 1.20695 1.51603 1.13632 1.22260 0.88584 1.01158 0.89231 1.22931 0.97504 0.99085 0.98079 1.22367 0.91546 0.85595 0.95381 1.21845 0.96442 0.92699 0.88833 1.20864 0.90738 0.92342 0.91302 1.44331 1.02070 1.14150 1.72629 1.19561 0.82155 1.25860 1.10927 0.90595 1.25787 1.01725 1.02382 0.94697 1.70197 1.37804 1.39412 1.11097 0.85204 0.80165 0.77474 0.77582 1.18612 1.21569 1.22581 1.21802 0.94890 0.90081 0.95612 1.23168 0.93483 0.90938 0.94774 1.87650 1.35027 1.28047 1.79548 0.92802 0.89265 0.92475 0.90791 0.92397 0.89955 0.92905 0.91644 0.91442 0.92605 0.92573 0.85800 0.85946 0.88890 0.88343 0.90695 0.88776 0.92058 0.90655 0.99398 0.90960 0.94089 0.97190 0.90591 0.91786 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.56 71.98 0.69 -1.11 16 2 C 0.07 0.98 3.34 30.59 0.10 1.08 16 3 C -0.17 -2.00 9.53 71.98 0.69 -1.32 16 4 O -0.41 -8.18 9.99 -148.98 -1.49 -9.67 16 5 C 0.07 1.03 5.75 71.98 0.41 1.44 16 6 C -0.10 -2.05 4.87 30.59 0.15 -1.90 16 7 C -0.12 -2.08 4.89 29.85 0.15 -1.93 16 8 C 0.52 15.23 7.85 87.66 0.69 15.92 16 9 O -0.59 -23.16 16.25 -3.03 -0.05 -23.21 16 10 N -0.61 -17.94 3.33 -812.55 -2.71 -20.65 16 11 C 0.11 2.42 6.50 86.77 0.56 2.98 16 12 C -0.14 -4.11 5.88 31.55 0.19 -3.93 16 13 C 0.09 3.45 0.84 -10.17 -0.01 3.44 16 14 C 0.13 4.57 6.08 86.56 0.53 5.09 16 15 C 0.17 8.25 4.07 86.01 0.35 8.60 16 16 N -0.61 -29.16 2.99 -698.86 -2.09 -31.24 16 17 C -0.26 -13.22 9.67 84.03 0.81 -12.41 16 18 H 0.08 3.77 7.88 -2.91 -0.02 3.74 16 19 C -0.05 -2.72 4.96 84.86 0.42 -2.30 16 20 N -0.94 -54.29 11.12 21.65 0.24 -54.05 16 21 Si 0.97 42.91 29.59 68.60 2.03 44.94 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 23 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 25 C 0.10 4.02 6.71 86.35 0.58 4.60 16 26 C 0.05 1.69 6.79 72.08 0.49 2.18 16 27 O -0.38 -14.06 10.28 -148.95 -1.53 -15.59 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.76 7.79 -2.39 -0.02 0.74 16 32 H 0.06 0.65 7.87 -2.39 -0.02 0.63 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.78 7.87 -2.38 -0.02 0.77 16 36 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 37 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 38 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 39 H 0.12 1.48 8.14 -2.38 -0.02 1.47 16 40 H 0.12 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.07 2.43 7.82 -2.39 -0.02 2.41 16 44 H 0.09 2.66 6.10 -2.39 -0.01 2.65 16 45 H 0.06 2.47 8.06 -2.39 -0.02 2.45 16 46 H 0.08 2.82 7.99 -2.38 -0.02 2.80 16 47 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 48 H 0.07 3.78 5.93 -2.39 -0.01 3.76 16 49 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 50 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 51 H 0.08 2.76 7.96 -2.39 -0.02 2.74 16 52 H 0.06 1.84 6.25 -2.39 -0.01 1.83 16 53 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -72.61 413.95 2.06 -70.55 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.86 Total: 18.50 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 6.79 Total: 20.42 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -4.55 Total: -105.94 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -3.07 Total: -48.48 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -72.61 2.06 -70.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330170264.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.077 kcal (2) G-P(sol) polarization free energy of solvation -72.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds