Wall clock time and date at job start Sat Apr 11 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.46770 * 2 1 4 4 N 1.46907 * 109.46928 * 179.97438 * 3 2 1 5 5 C 1.46850 * 110.99892 * 75.67976 * 4 3 2 6 6 C 1.53032 * 109.52166 * 185.84111 * 5 4 3 7 7 C 1.53121 * 109.27845 * 300.81842 * 6 5 4 8 8 C 1.53113 * 109.15990 * 57.65436 * 7 6 5 9 9 C 1.46930 * 110.98684 * 199.90701 * 4 3 2 10 10 H 1.08998 * 109.45121 * 294.16068 * 9 4 3 11 11 C 1.50697 * 109.51736 * 54.15687 * 9 4 3 12 12 O 1.20833 * 119.99930 * 28.77089 * 11 9 4 13 13 O 1.34227 * 120.00114 * 208.76458 * 11 9 4 14 14 C 1.45200 * 116.99908 * 179.97438 * 13 11 9 15 15 H 1.08994 * 109.47166 * 330.00206 * 14 13 11 16 16 C 1.53000 * 109.47078 * 90.00820 * 14 13 11 17 17 C 1.50710 * 109.46947 * 210.00254 * 14 13 11 18 18 O 1.21279 * 119.99675 * 0.02562 * 17 14 13 19 19 N 1.34771 * 119.99487 * 180.02562 * 17 14 13 20 20 C 1.46497 * 120.00372 * 0.02562 * 19 17 14 21 21 C 1.46507 * 119.99806 * 179.97438 * 19 17 14 22 22 C 1.50695 * 109.46944 * 89.99965 * 21 19 17 23 23 H 1.08000 * 120.00298 * 0.02562 * 22 21 19 24 24 C 1.37871 * 120.00086 * 179.97438 * 22 21 19 25 25 N 1.31523 * 120.00337 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00003 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.47075 * 89.99817 * 26 24 22 28 28 H 1.48507 * 109.47030 * 209.99927 * 26 24 22 29 29 H 1.48500 * 109.46893 * 329.99448 * 26 24 22 30 30 H 1.09000 * 109.47392 * 59.99771 * 1 2 3 31 31 H 1.09007 * 109.46756 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46981 * 299.99724 * 1 2 3 33 33 H 1.08997 * 109.46655 * 240.00165 * 2 1 3 34 34 H 1.09001 * 109.46903 * 120.00038 * 2 1 3 35 35 H 1.08997 * 109.47397 * 60.00619 * 3 2 1 36 36 H 1.09001 * 109.47439 * 299.99709 * 3 2 1 37 37 H 1.08999 * 109.46230 * 65.81888 * 5 4 3 38 38 H 1.09000 * 109.45886 * 305.86027 * 5 4 3 39 39 H 1.09000 * 109.50100 * 180.87659 * 6 5 4 40 40 H 1.08995 * 109.50735 * 60.76082 * 6 5 4 41 41 H 1.09005 * 109.52159 * 297.75190 * 7 6 5 42 42 H 1.09002 * 109.52361 * 177.56630 * 7 6 5 43 43 H 1.09000 * 109.50391 * 62.28985 * 8 7 6 44 44 H 1.08999 * 109.50375 * 182.36468 * 8 7 6 45 45 H 1.09004 * 109.46280 * 299.99589 * 16 14 13 46 46 H 1.09000 * 109.47121 * 59.99214 * 16 14 13 47 47 H 1.08995 * 109.47226 * 179.97438 * 16 14 13 48 48 H 1.09006 * 109.47298 * 90.00294 * 20 19 17 49 49 H 1.09007 * 109.46881 * 209.99492 * 20 19 17 50 50 H 1.09002 * 109.47502 * 329.99857 * 20 19 17 51 51 H 1.09000 * 109.47338 * 210.00127 * 21 19 17 52 52 H 1.08998 * 109.46854 * 330.00641 * 21 19 17 53 53 H 0.96999 * 120.00178 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0358 1.1032 -1.3275 6 6 5.5586 0.9701 -1.2549 7 6 6.1591 2.2925 -0.7696 8 6 5.5578 2.6473 0.5931 9 6 4.0350 2.7324 0.4677 10 1 3.7725 3.5119 -0.2475 11 6 3.4382 3.0627 1.8115 12 8 3.1029 2.1740 2.5585 13 8 3.2792 4.3439 2.1787 14 6 2.6974 4.5874 3.4866 15 1 2.0192 3.7727 3.7400 16 6 3.8108 4.6684 4.5330 17 6 1.9348 5.8871 3.4630 18 8 1.8860 6.5431 2.4442 19 7 1.3070 6.3202 4.5742 20 6 1.3665 5.5280 5.8051 21 6 0.5661 7.5839 4.5515 22 6 -0.8628 7.3212 4.1513 23 1 -1.1868 6.3137 3.9358 24 6 -1.7568 8.3669 4.0612 25 7 -3.0041 8.1376 3.7123 26 14 -1.1968 10.1093 4.4346 27 1 -0.7046 10.7490 3.1880 28 1 -2.3380 10.8910 4.9749 29 1 -0.1025 10.0732 5.4378 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.7732 1.8903 -2.0343 38 1 3.6040 0.1589 -1.6590 39 1 5.9508 0.7336 -2.2440 40 1 5.8216 0.1739 -0.5587 41 1 5.9292 3.0815 -1.4858 42 1 7.2400 2.1887 -0.6751 43 1 5.8208 1.8774 1.3185 44 1 5.9500 3.6088 0.9246 45 1 4.3623 3.7284 4.5499 46 1 4.4891 5.4832 4.2795 47 1 3.3741 4.8517 5.5147 48 1 2.2307 5.8356 6.3938 49 1 0.4569 5.6877 6.3842 50 1 1.4560 4.4712 5.5531 51 1 0.5884 8.0360 5.5431 52 1 1.0260 8.2618 3.8325 53 1 -3.6329 8.8733 3.6486 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771612921.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:42 Heat of formation + Delta-G solvation = -137.064752 kcal Electronic energy + Delta-G solvation = -31488.579789 eV Core-core repulsion = 27359.673957 eV Total energy + Delta-G solvation = -4128.905832 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.24946 -40.93686 -39.71361 -37.59039 -36.81747 -36.02563 -34.90916 -33.39888 -32.92710 -32.16655 -30.14691 -27.86199 -27.56910 -26.17297 -25.41794 -24.50619 -23.81837 -22.08600 -21.85379 -20.75960 -20.45445 -19.24835 -19.11793 -18.25804 -17.58253 -17.40533 -17.16980 -16.59425 -16.40948 -16.26554 -15.72726 -15.66054 -15.15661 -15.10087 -14.73990 -14.56864 -14.47139 -14.42908 -14.35477 -13.99680 -13.81791 -13.72757 -13.60581 -13.43260 -13.14447 -12.99061 -12.82876 -12.63930 -12.59626 -12.44144 -12.38772 -12.17546 -12.05820 -12.02458 -11.95256 -11.77742 -11.73402 -11.59034 -11.23562 -11.21709 -10.86076 -10.72237 -9.54482 -9.49935 -8.36885 -6.43493 0.92814 1.16802 1.32571 1.36803 1.45215 1.51660 2.23283 2.29382 2.67207 2.97378 3.31497 3.40493 3.66789 3.71330 3.79152 3.81450 3.87106 4.02764 4.06437 4.19533 4.22859 4.26318 4.36520 4.45150 4.49182 4.51626 4.58372 4.59205 4.61283 4.69710 4.75143 4.77668 4.83374 4.85328 4.87787 4.94414 5.01233 5.06661 5.07997 5.16020 5.19175 5.22846 5.24189 5.31761 5.40345 5.44922 5.48072 5.78758 5.96990 6.17525 6.43589 6.57947 6.59490 7.10054 7.24102 8.80229 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013668 B = 0.002823 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.106138 B = 9915.106750 C =10701.365416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 C 0.045 3.955 4 N -0.524 5.524 5 C 0.052 3.948 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.103 4.103 9 C 0.097 3.903 10 H 0.071 0.929 11 C 0.463 3.537 12 O -0.506 6.506 13 O -0.345 6.345 14 C 0.078 3.922 15 H 0.106 0.894 16 C -0.165 4.165 17 C 0.502 3.498 18 O -0.576 6.576 19 N -0.596 5.596 20 C 0.066 3.934 21 C 0.224 3.776 22 C -0.542 4.542 23 H 0.025 0.975 24 C 0.010 3.990 25 N -0.946 5.946 26 Si 0.951 3.049 27 H -0.277 1.277 28 H -0.274 1.274 29 H -0.232 1.232 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.114 0.886 48 H 0.097 0.903 49 H 0.075 0.925 50 H 0.082 0.918 51 H 0.062 0.938 52 H 0.022 0.978 53 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.832 -15.904 -4.808 26.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.140 4.140 3 C -0.082 4.082 4 N -0.251 5.251 5 C -0.074 4.074 6 C -0.152 4.152 7 C -0.153 4.153 8 C -0.140 4.140 9 C -0.012 4.012 10 H 0.088 0.912 11 C 0.305 3.695 12 O -0.393 6.393 13 O -0.261 6.261 14 C 0.020 3.980 15 H 0.123 0.877 16 C -0.221 4.221 17 C 0.289 3.711 18 O -0.456 6.456 19 N -0.327 5.327 20 C -0.076 4.076 21 C 0.102 3.898 22 C -0.581 4.581 23 H 0.043 0.957 24 C -0.188 4.188 25 N -0.586 5.586 26 Si 0.773 3.227 27 H -0.202 1.202 28 H -0.200 1.200 29 H -0.155 1.155 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.133 0.867 48 H 0.115 0.885 49 H 0.094 0.906 50 H 0.100 0.900 51 H 0.080 0.920 52 H 0.040 0.960 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.683 -16.083 -4.745 26.627 hybrid contribution -1.377 1.454 -0.446 2.052 sum 19.306 -14.629 -5.192 24.773 Atomic orbital electron populations 1.21758 0.95452 1.02538 1.01306 1.21348 0.95317 0.94479 1.02874 1.22291 0.87051 0.99172 0.99720 1.61862 1.07399 1.27558 1.28235 1.22354 0.96949 1.01527 0.86604 1.21635 0.92802 0.97906 1.02860 1.21594 1.01229 0.97867 0.94565 1.21605 0.88448 1.03335 1.00659 1.21386 0.98048 0.92702 0.89082 0.91175 1.24140 0.75177 0.80056 0.90094 1.90628 1.46626 1.48019 1.54017 1.86618 1.73529 1.29641 1.36326 1.22516 0.97615 0.95313 0.82588 0.87670 1.22406 0.96992 1.04533 0.98210 1.20628 0.79818 0.87233 0.83449 1.90659 1.63250 1.58870 1.32819 1.47800 1.49646 1.23823 1.11480 1.22300 1.04133 0.95566 0.85576 1.19447 0.89568 0.82706 0.98049 1.21547 0.94794 0.94465 1.47276 0.95684 1.25901 0.94557 1.04288 0.94025 1.70059 1.05226 1.34120 1.49145 0.85675 0.79228 0.78076 0.79733 1.20223 1.19957 1.15495 0.92509 0.90819 0.94417 0.90132 0.92018 0.93938 0.94338 0.94339 0.88708 0.88909 0.90999 0.91426 0.89026 0.90507 0.89931 0.89642 0.90727 0.86749 0.88467 0.90601 0.89987 0.91975 0.95965 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.91 71.98 0.71 -2.42 16 2 C -0.10 -2.13 6.04 30.59 0.18 -1.94 16 3 C 0.05 1.14 4.60 86.30 0.40 1.54 16 4 N -0.52 -11.67 4.19 -875.31 -3.66 -15.33 16 5 C 0.05 0.81 5.29 86.32 0.46 1.27 16 6 C -0.11 -1.32 6.09 30.65 0.19 -1.13 16 7 C -0.12 -1.40 6.00 30.67 0.18 -1.21 16 8 C -0.10 -1.81 5.35 30.64 0.16 -1.64 16 9 C 0.10 2.34 2.35 44.17 0.10 2.45 16 10 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 11 C 0.46 14.21 5.74 71.23 0.41 14.62 16 12 O -0.51 -16.95 14.66 21.94 0.32 -16.63 16 13 O -0.35 -12.02 9.41 -45.04 -0.42 -12.45 16 14 C 0.08 2.59 2.18 29.85 0.07 2.66 16 15 H 0.11 3.50 6.42 -2.39 -0.02 3.48 16 16 C -0.16 -3.79 9.18 71.98 0.66 -3.13 16 17 C 0.50 21.62 7.16 87.66 0.63 22.25 16 18 O -0.58 -30.72 16.08 15.77 0.25 -30.47 16 19 N -0.60 -24.36 2.86 -851.11 -2.43 -26.79 16 20 C 0.07 1.84 8.80 127.77 1.12 2.96 16 21 C 0.22 10.86 4.23 85.63 0.36 11.22 16 22 C -0.54 -32.24 9.94 25.60 0.25 -31.99 16 23 H 0.02 1.68 8.06 -2.91 -0.02 1.65 16 24 C 0.01 0.62 5.47 84.65 0.46 1.08 16 25 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 26 Si 0.95 44.15 27.47 68.60 1.88 46.03 16 27 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 28 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 29 H -0.23 -9.46 6.54 99.48 0.65 -8.81 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.04 0.90 8.14 -2.38 -0.02 0.89 16 33 H 0.08 1.33 6.84 -2.39 -0.02 1.31 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.04 1.35 5.67 -2.39 -0.01 1.34 16 36 H 0.04 0.94 8.00 -2.39 -0.02 0.92 16 37 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.09 1.25 6.71 -2.39 -0.02 1.24 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 0.81 8.14 -2.38 -0.02 0.80 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.11 2.10 4.53 -2.39 -0.01 2.09 16 48 H 0.10 1.91 6.95 -2.38 -0.02 1.90 16 49 H 0.08 2.23 8.07 -2.38 -0.02 2.21 16 50 H 0.08 1.97 6.01 -2.39 -0.01 1.96 16 51 H 0.06 2.67 7.13 -2.39 -0.02 2.65 16 52 H 0.02 1.15 6.85 -2.39 -0.02 1.14 16 53 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -81.85 411.25 3.42 -78.43 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.82 Total: 20.65 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 6.36 Total: 16.56 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -5.80 Total: -102.12 kcal Atomic # 8 Polarization: -59.70 SS G_CDS: 0.15 Total: -59.54 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.03 kcal Total: -81.85 3.42 -78.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771612921.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.639 kcal (2) G-P(sol) polarization free energy of solvation -81.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds