Wall clock time and date at job start Sat Apr 11 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47068 * 2 1 4 4 O 1.45209 * 109.46904 * 119.99469 * 2 1 3 5 5 C 1.34228 * 116.99584 * 149.99946 * 4 2 1 6 6 O 1.20824 * 120.00382 * 0.02562 * 5 4 2 7 7 C 1.50705 * 119.99783 * 180.02562 * 5 4 2 8 8 C 1.52999 * 109.47236 * 180.02562 * 7 5 4 9 9 H 1.09008 * 109.49231 * 304.93412 * 8 7 5 10 10 C 1.53097 * 109.51523 * 184.87218 * 8 7 5 11 11 C 1.53043 * 109.50656 * 178.68160 * 10 8 7 12 12 C 1.53197 * 109.33904 * 61.34325 * 11 10 8 13 13 N 1.46925 * 108.77348 * 305.35418 * 12 11 10 14 14 C 1.34779 * 120.62701 * 233.58020 * 13 12 11 15 15 O 1.21595 * 119.99576 * 174.77858 * 14 13 12 16 16 N 1.34771 * 120.00345 * 354.77770 * 14 13 12 17 17 C 1.46499 * 120.00038 * 184.98086 * 16 14 13 18 18 C 1.53005 * 109.46914 * 180.02562 * 17 16 14 19 19 C 1.53006 * 109.47126 * 179.97438 * 18 17 16 20 20 C 1.50690 * 109.47070 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00674 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99869 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00126 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99843 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47427 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47019 * 120.00283 * 24 22 20 27 27 H 1.48502 * 109.47045 * 240.00142 * 24 22 20 28 28 C 1.46926 * 118.74047 * 53.60944 * 13 12 11 29 29 H 1.09003 * 109.47647 * 300.00169 * 1 2 3 30 30 H 1.08997 * 109.46988 * 60.00520 * 1 2 3 31 31 H 1.09006 * 109.46918 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47356 * 239.99141 * 2 1 3 33 33 H 1.08997 * 109.46791 * 299.99600 * 3 2 1 34 34 H 1.08998 * 109.47373 * 59.99777 * 3 2 1 35 35 H 1.08997 * 109.46993 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.46990 * 60.00392 * 7 5 4 37 37 H 1.09000 * 109.46974 * 300.00134 * 7 5 4 38 38 H 1.09003 * 109.51117 * 58.65314 * 10 8 7 39 39 H 1.09003 * 109.45090 * 298.66904 * 10 8 7 40 40 H 1.09007 * 109.49625 * 301.38144 * 11 10 8 41 41 H 1.08994 * 109.50569 * 181.31575 * 11 10 8 42 42 H 1.09001 * 109.58276 * 65.13982 * 12 11 10 43 43 H 1.09002 * 109.58877 * 185.42476 * 12 11 10 44 44 H 0.96999 * 119.99989 * 4.98524 * 16 14 13 45 45 H 1.09007 * 109.47104 * 299.99775 * 17 16 14 46 46 H 1.08998 * 109.47532 * 60.00528 * 17 16 14 47 47 H 1.08998 * 109.46989 * 299.99677 * 18 17 16 48 48 H 1.08996 * 109.47346 * 59.99951 * 18 17 16 49 49 H 1.08998 * 109.47018 * 299.99777 * 19 18 17 50 50 H 1.08996 * 109.46951 * 59.99828 * 19 18 17 51 51 H 0.96999 * 119.99840 * 179.97438 * 23 22 20 52 52 H 1.08999 * 109.58624 * 66.17595 * 28 13 12 53 53 H 1.09000 * 109.58669 * 186.60270 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0139 -0.6844 1.1857 5 6 3.1935 -1.3170 1.0853 6 8 3.8018 -1.2990 0.0415 7 6 3.7593 -2.0496 2.2745 8 6 5.1022 -2.6770 1.8954 9 1 4.9730 -3.3102 1.0175 10 6 5.6197 -3.5218 3.0627 11 6 6.9469 -4.1758 2.6713 12 6 7.9795 -3.0856 2.3676 13 7 7.4282 -2.1831 1.3477 14 6 8.1154 -1.9221 0.2181 15 8 7.6092 -1.2504 -0.6600 16 7 9.3637 -2.4055 0.0617 17 6 10.1515 -2.0326 -1.1158 18 6 11.5204 -2.7129 -1.0499 19 6 12.3430 -2.3240 -2.2800 20 6 13.6914 -2.9934 -2.2147 21 1 13.9372 -3.6327 -1.3797 22 6 14.6112 -2.7906 -3.2217 23 7 14.3119 -2.0126 -4.2388 24 14 16.2826 -3.6211 -3.1411 25 1 16.3700 -4.4388 -1.9046 26 1 16.4574 -4.4976 -4.3270 27 1 17.3488 -2.5875 -3.1280 28 6 6.1139 -1.5700 1.5830 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5140 -0.8899 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1299 1.4425 0.0005 36 1 3.0662 -2.8324 2.5824 37 1 3.9052 -1.3493 3.0970 38 1 4.8907 -4.2956 3.3034 39 1 5.7723 -2.8836 3.9331 40 1 6.8003 -4.7948 1.7861 41 1 7.3036 -4.7958 3.4937 42 1 8.1945 -2.5228 3.2760 43 1 8.8961 -3.5438 1.9961 44 1 9.7405 -3.0004 0.7288 45 1 9.6301 -2.3528 -2.0181 46 1 10.2836 -0.9509 -1.1370 47 1 12.0419 -2.3931 -0.1478 48 1 11.3880 -3.7946 -1.0290 49 1 11.8213 -2.6441 -3.1819 50 1 12.4754 -1.2423 -2.3014 51 1 14.9592 -1.8696 -4.9470 52 1 6.1768 -0.8835 2.4273 53 1 5.7987 -1.0279 0.6914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184110973.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:22 Heat of formation + Delta-G solvation = -164.971580 kcal Electronic energy + Delta-G solvation = -29920.449903 eV Core-core repulsion = 25790.333940 eV Total energy + Delta-G solvation = -4130.115963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.87749 -41.28413 -39.03784 -37.80405 -36.97803 -35.39075 -34.78870 -34.10780 -32.84018 -32.76855 -29.25453 -28.38327 -28.23541 -26.36614 -24.77878 -24.27333 -22.83264 -22.32527 -21.78008 -21.20896 -20.47264 -19.12223 -18.75342 -18.47284 -17.57598 -17.33801 -17.10159 -16.84596 -16.48842 -15.97487 -15.68411 -15.56035 -15.36417 -15.24320 -14.84563 -14.56397 -14.30129 -14.20740 -14.08305 -13.92202 -13.72743 -13.48642 -13.47507 -13.19326 -13.13762 -12.85462 -12.78172 -12.65618 -12.53518 -12.34836 -12.13018 -11.95016 -11.89681 -11.82746 -11.70505 -11.69388 -11.55466 -11.47722 -11.25967 -11.14121 -11.08240 -10.57023 -10.25788 -9.47790 -8.19883 -6.31796 1.22619 1.41332 1.42045 1.55175 1.60522 1.71099 2.08891 2.41576 2.94779 3.13778 3.59357 3.68056 3.78103 3.79456 3.91884 3.97488 4.09649 4.12073 4.14606 4.18935 4.19807 4.33188 4.52195 4.55910 4.60561 4.63250 4.66204 4.71145 4.72209 4.81559 4.83872 4.91470 4.92867 4.94905 4.97421 5.08198 5.10613 5.14501 5.15398 5.19031 5.27370 5.45032 5.47809 5.52063 5.57536 5.59687 5.68768 5.82907 5.91924 6.21344 6.78961 6.85343 6.96626 7.37804 7.53669 8.92660 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017014 B = 0.001859 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.297706 B =15061.387906 C =16433.055030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 C -0.167 4.167 4 O -0.355 6.355 5 C 0.447 3.553 6 O -0.539 6.539 7 C -0.098 4.098 8 C -0.086 4.086 9 H 0.053 0.947 10 C -0.105 4.105 11 C -0.132 4.132 12 C 0.099 3.901 13 N -0.625 5.625 14 C 0.694 3.306 15 O -0.641 6.641 16 N -0.731 5.731 17 C 0.149 3.851 18 C -0.098 4.098 19 C 0.023 3.977 20 C -0.539 4.539 21 H 0.069 0.931 22 C -0.006 4.006 23 N -0.936 5.936 24 Si 0.971 3.029 25 H -0.257 1.257 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.121 3.879 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.036 0.964 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.409 0.591 45 H 0.040 0.960 46 H 0.045 0.955 47 H 0.070 0.930 48 H 0.068 0.932 49 H -0.010 1.010 50 H -0.008 1.008 51 H 0.263 0.737 52 H 0.081 0.919 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.654 -1.928 23.483 37.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 C -0.224 4.224 4 O -0.272 6.272 5 C 0.292 3.708 6 O -0.428 6.428 7 C -0.135 4.135 8 C -0.106 4.106 9 H 0.072 0.928 10 C -0.142 4.142 11 C -0.170 4.170 12 C -0.022 4.022 13 N -0.361 5.361 14 C 0.395 3.605 15 O -0.523 6.523 16 N -0.389 5.389 17 C 0.024 3.976 18 C -0.136 4.136 19 C -0.015 4.015 20 C -0.577 4.577 21 H 0.087 0.913 22 C -0.203 4.203 23 N -0.577 5.577 24 Si 0.795 3.205 25 H -0.180 1.180 26 H -0.206 1.206 27 H -0.205 1.205 28 C -0.002 4.002 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.248 0.752 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.009 0.991 50 H 0.010 0.990 51 H 0.072 0.928 52 H 0.100 0.900 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -28.776 -1.343 22.384 36.482 hybrid contribution 1.232 -0.122 -1.106 1.660 sum -27.544 -1.465 21.278 34.836 Atomic orbital electron populations 1.21878 0.89943 1.03617 1.04410 1.22910 0.96740 0.92673 0.86115 1.22196 1.00623 0.95192 1.04436 1.86552 1.36522 1.62642 1.41510 1.24675 0.78900 0.76244 0.90991 1.90770 1.59669 1.59523 1.32853 1.21576 0.96566 1.01603 0.93766 1.21351 0.92608 0.96719 0.99917 0.92835 1.21578 0.96877 0.99414 0.96353 1.21929 0.95374 0.97123 1.02579 1.22014 0.97222 0.91512 0.91488 1.47304 1.20256 1.50133 1.18446 1.16193 0.81486 0.80119 0.82694 1.90896 1.70427 1.47168 1.43796 1.45192 1.13915 1.53029 1.26738 1.21077 0.91188 0.98638 0.86671 1.21579 0.92309 1.00021 0.99672 1.18950 0.94316 0.95286 0.92931 1.21701 0.99996 1.28936 1.07103 0.91315 1.26075 1.03308 0.95978 0.94964 1.70133 1.37007 1.39229 1.11287 0.85316 0.78429 0.78237 0.78534 1.18011 1.20631 1.20537 1.21764 0.80970 0.95503 1.01957 0.90320 0.88927 0.91588 0.92056 0.89318 0.90113 0.94510 0.84033 0.84507 0.88959 0.88949 0.93138 0.87361 0.88817 0.90023 0.75153 0.94108 0.93688 0.91087 0.91369 0.99147 0.98962 0.92825 0.90042 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.57 71.98 0.69 -0.77 16 2 C 0.07 1.21 3.18 30.59 0.10 1.31 16 3 C -0.17 -2.70 9.55 71.98 0.69 -2.01 16 4 O -0.35 -6.42 9.88 -51.40 -0.51 -6.93 16 5 C 0.45 9.12 7.68 71.24 0.55 9.67 16 6 O -0.54 -16.53 13.20 21.97 0.29 -16.24 16 7 C -0.10 -1.04 5.29 29.85 0.16 -0.88 16 8 C -0.09 -1.35 1.98 -10.70 -0.02 -1.37 16 9 H 0.05 1.20 7.96 -2.38 -0.02 1.18 16 10 C -0.10 -0.82 5.17 30.64 0.16 -0.66 16 11 C -0.13 -1.37 6.08 30.67 0.19 -1.19 16 12 C 0.10 1.48 6.38 86.36 0.55 2.03 16 13 N -0.62 -15.86 2.97 -836.90 -2.49 -18.34 16 14 C 0.69 24.90 8.29 179.06 1.49 26.38 16 15 O -0.64 -30.16 15.77 -4.01 -0.06 -30.23 16 16 N -0.73 -23.71 5.46 -478.52 -2.62 -26.32 16 17 C 0.15 5.91 5.68 86.38 0.49 6.40 16 18 C -0.10 -3.99 5.27 30.60 0.16 -3.83 16 19 C 0.02 1.24 4.97 29.85 0.15 1.39 16 20 C -0.54 -30.73 9.11 25.60 0.23 -30.49 16 21 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 22 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 23 N -0.94 -58.42 13.29 21.45 0.28 -58.14 16 24 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 C 0.12 2.82 5.39 86.36 0.47 3.28 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.06 1.35 7.16 -2.39 -0.02 1.33 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 1.17 5.66 -2.39 -0.01 1.15 16 44 H 0.41 10.16 5.96 -92.71 -0.55 9.61 16 45 H 0.04 1.78 8.14 -2.38 -0.02 1.77 16 46 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 48 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 49 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 50 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 51 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 52 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 53 H 0.06 2.19 4.95 -2.39 -0.01 2.18 16 Total: -1.00 -86.06 421.08 3.75 -82.31 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.32 Total: 18.04 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 6.50 Total: 9.40 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -4.82 Total: -102.81 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.28 Total: -53.40 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -86.06 3.75 -82.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184110973.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.664 kcal (2) G-P(sol) polarization free energy of solvation -86.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds