Wall clock time and date at job start Sat Apr 11 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 110.55585 * 2 1 4 4 C 1.54994 * 110.62048 * 237.11782 * 2 1 3 5 5 C 1.54807 * 102.09398 * 204.47833 * 4 2 1 6 6 H 1.09004 * 110.60358 * 262.14593 * 5 4 2 7 7 C 1.53003 * 110.48862 * 139.55857 * 5 4 2 8 8 C 1.54098 * 104.19048 * 20.87864 * 5 4 2 9 9 H 1.08995 * 109.88392 * 242.45524 * 8 5 4 10 10 C 1.50701 * 109.87911 * 121.45213 * 8 5 4 11 11 O 1.21286 * 120.00338 * 267.52886 * 10 8 5 12 12 N 1.34773 * 120.00228 * 87.51848 * 10 8 5 13 13 C 1.46505 * 119.99620 * 5.45407 * 12 10 8 14 14 C 1.50696 * 109.47270 * 263.49464 * 13 12 10 15 15 H 1.08004 * 119.99901 * 4.25419 * 14 13 12 16 16 C 1.37874 * 120.00238 * 184.25679 * 14 13 12 17 17 N 1.31518 * 120.00313 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99929 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46828 * 90.00272 * 18 16 14 20 20 H 1.48501 * 109.47188 * 210.00079 * 18 16 14 21 21 H 1.48495 * 109.47157 * 330.00417 * 18 16 14 22 22 C 1.46501 * 120.00594 * 185.45019 * 12 10 8 23 23 C 1.52999 * 109.46904 * 270.00196 * 22 12 10 24 24 N 1.46899 * 109.46835 * 179.97438 * 23 22 12 25 25 C 1.47016 * 111.00274 * 293.63626 * 24 23 22 26 26 C 1.53100 * 109.25993 * 177.60470 * 25 24 23 27 27 O 1.43017 * 109.25526 * 56.85252 * 26 25 24 28 28 C 1.43024 * 113.73748 * 301.32746 * 27 26 25 29 29 C 1.47018 * 111.00283 * 170.00331 * 24 23 22 30 30 O 1.43743 * 107.29037 * 2.03498 * 8 5 4 31 31 H 1.08999 * 109.47797 * 182.87874 * 1 2 3 32 32 H 1.09004 * 109.47553 * 302.88176 * 1 2 3 33 33 H 1.09004 * 109.46977 * 62.87584 * 1 2 3 34 34 H 1.09000 * 110.90124 * 86.27779 * 4 2 1 35 35 H 1.09000 * 110.90766 * 322.67703 * 4 2 1 36 36 H 1.09000 * 109.46482 * 310.99327 * 7 5 4 37 37 H 1.09000 * 109.47032 * 70.99312 * 7 5 4 38 38 H 1.08995 * 109.47151 * 190.99051 * 7 5 4 39 39 H 1.09000 * 109.47302 * 23.49590 * 13 12 10 40 40 H 1.09005 * 109.47044 * 143.49303 * 13 12 10 41 41 H 0.96992 * 120.00314 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.46795 * 150.00326 * 22 12 10 43 43 H 1.08998 * 109.46840 * 30.00252 * 22 12 10 44 44 H 1.09005 * 109.47039 * 60.00022 * 23 22 12 45 45 H 1.08998 * 109.47418 * 299.99702 * 23 22 12 46 46 H 1.08997 * 109.51116 * 297.54343 * 25 24 23 47 47 H 1.09007 * 109.50398 * 57.67205 * 25 24 23 48 48 H 1.08998 * 109.50962 * 296.92000 * 26 25 24 49 49 H 1.09001 * 109.54365 * 176.80637 * 26 25 24 50 50 H 1.08994 * 109.50389 * 298.73899 * 28 27 26 51 51 H 1.09003 * 109.53883 * 178.62658 * 28 27 26 52 52 H 1.09003 * 109.49914 * 302.33185 * 29 24 23 53 53 H 1.08997 * 109.50218 * 62.41098 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2182 5 6 3.4794 -1.2157 -0.7252 6 1 4.2423 -0.5334 -1.1002 7 6 3.7854 -2.6502 -1.1604 8 6 3.3839 -1.1266 0.8102 9 1 4.0872 -0.3820 1.1828 10 6 3.6887 -2.4700 1.4214 11 8 2.7878 -3.2462 1.6601 12 7 4.9624 -2.8090 1.7026 13 6 6.0372 -1.8291 1.5263 14 6 6.6913 -2.0369 0.1847 15 1 6.2981 -2.7743 -0.4994 16 6 7.7919 -1.2857 -0.1694 17 7 8.3625 -1.4666 -1.3405 18 14 8.4717 -0.0098 1.0136 19 1 9.4933 -0.6401 1.8878 20 1 9.0939 1.0972 0.2437 21 1 7.3684 0.5276 1.8496 22 6 5.2723 -4.1573 2.1846 23 6 5.1982 -4.1822 3.7126 24 7 5.5083 -5.5343 4.1959 25 6 4.4701 -6.4913 3.7863 26 6 4.8620 -7.8941 4.2580 27 8 5.0552 -7.8784 5.6750 28 6 6.0599 -6.9577 6.1089 29 6 5.6801 -5.5455 5.6560 30 8 2.0384 -0.7370 1.1327 31 1 -0.3635 -1.0263 0.0516 32 1 -0.3634 0.5579 0.8630 33 1 -0.3633 0.4686 -0.9147 34 1 2.1509 -0.1445 -2.0951 35 1 1.4549 -1.6585 -1.4283 36 1 2.9435 -3.2943 -0.9065 37 1 3.9504 -2.6757 -2.2376 38 1 4.6802 -3.0026 -0.6474 39 1 5.6227 -0.8223 1.5764 40 1 6.7782 -1.9567 2.3155 41 1 9.1364 -0.9379 -1.5897 42 1 6.2766 -4.4355 1.8650 43 1 4.5515 -4.8644 1.7743 44 1 4.1938 -3.9039 4.0322 45 1 5.9190 -3.4751 4.1230 46 1 3.5177 -6.2093 4.2349 47 1 4.3776 -6.4851 2.7002 48 1 5.7871 -8.1977 3.7679 49 1 4.0688 -8.5982 4.0065 50 1 7.0197 -7.2341 5.6726 51 1 6.1332 -6.9838 7.1962 52 1 6.4708 -4.8489 5.9346 53 1 4.7472 -5.2476 6.1344 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330372283.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:00 Heat of formation + Delta-G solvation = -129.069739 kcal Electronic energy + Delta-G solvation = -32243.128443 eV Core-core repulsion = 28114.569300 eV Total energy + Delta-G solvation = -4128.559143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.81895 -40.59059 -39.60671 -37.39304 -36.50511 -34.55039 -34.44725 -33.13571 -32.23693 -31.37177 -29.60115 -28.26681 -27.85562 -26.53008 -25.06284 -24.44644 -23.42990 -22.22429 -21.83419 -21.39947 -19.75807 -19.10434 -18.45498 -17.89720 -17.49273 -17.36100 -17.10323 -16.36416 -16.25754 -16.04240 -15.96933 -15.83180 -15.47870 -15.29663 -15.27418 -14.75111 -14.41967 -14.28476 -14.04501 -13.78070 -13.71313 -13.44839 -13.36205 -13.30435 -13.11633 -12.99597 -12.87102 -12.58965 -12.52793 -12.35148 -12.31167 -12.10623 -12.01599 -11.84582 -11.76644 -11.67086 -11.52107 -11.36447 -10.94008 -10.76044 -10.72039 -10.30890 -9.59403 -9.41720 -8.22109 -6.27558 1.40627 1.44427 1.50547 1.57808 1.91741 2.37845 2.70128 2.92326 3.05003 3.11042 3.44038 3.59701 3.75796 3.78706 3.87266 3.94257 3.96737 4.08567 4.16181 4.18142 4.25101 4.29241 4.36449 4.42163 4.43557 4.45661 4.55180 4.61887 4.66017 4.69570 4.74574 4.76977 4.78689 4.81041 4.84810 4.87648 4.91343 4.98038 5.00044 5.03726 5.06489 5.24347 5.27705 5.35972 5.46017 5.57265 5.83881 5.89038 5.92342 6.14038 6.22590 6.56224 6.81131 7.20650 7.37730 8.92066 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008538 B = 0.004209 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.560049 B = 6650.977693 C = 8908.843658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.061 3.939 3 H 0.087 0.913 4 C -0.138 4.138 5 C -0.096 4.096 6 H 0.092 0.908 7 C -0.153 4.153 8 C 0.065 3.935 9 H 0.093 0.907 10 C 0.526 3.474 11 O -0.578 6.578 12 N -0.589 5.589 13 C 0.211 3.789 14 C -0.530 4.530 15 H 0.059 0.941 16 C 0.030 3.970 17 N -0.935 5.935 18 Si 0.924 3.076 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.243 1.243 22 C 0.131 3.869 23 C 0.058 3.942 24 N -0.537 5.537 25 C 0.016 3.984 26 C 0.068 3.932 27 O -0.403 6.403 28 C 0.065 3.935 29 C 0.016 3.984 30 O -0.378 6.378 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.042 0.958 41 H 0.266 0.734 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.020 0.980 45 H 0.082 0.918 46 H 0.029 0.971 47 H 0.083 0.917 48 H 0.066 0.934 49 H 0.114 0.886 50 H 0.065 0.935 51 H 0.120 0.880 52 H 0.099 0.901 53 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 -1.575 8.027 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.004 3.996 3 H 0.105 0.895 4 C -0.176 4.176 5 C -0.115 4.115 6 H 0.111 0.889 7 C -0.210 4.210 8 C 0.004 3.996 9 H 0.111 0.889 10 C 0.315 3.685 11 O -0.459 6.459 12 N -0.321 5.321 13 C 0.089 3.911 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.169 4.169 17 N -0.575 5.575 18 Si 0.748 3.252 19 H -0.195 1.195 20 H -0.214 1.214 21 H -0.166 1.166 22 C 0.007 3.993 23 C -0.071 4.071 24 N -0.263 5.263 25 C -0.112 4.112 26 C -0.008 4.008 27 O -0.322 6.322 28 C -0.012 4.012 29 C -0.112 4.112 30 O -0.297 6.297 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.038 0.962 45 H 0.101 0.899 46 H 0.047 0.953 47 H 0.102 0.898 48 H 0.084 0.916 49 H 0.132 0.868 50 H 0.083 0.917 51 H 0.138 0.862 52 H 0.117 0.883 53 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.985 -2.226 8.162 11.633 hybrid contribution 0.304 1.038 0.029 1.082 sum -7.681 -1.188 8.191 11.292 Atomic orbital electron populations 1.21764 0.91453 1.02595 1.03753 1.23472 0.96561 0.95482 0.84048 0.89490 1.23312 0.94078 1.00996 0.99179 1.22223 0.99086 0.98857 0.91363 0.88930 1.22074 1.01708 0.95311 1.01895 1.22787 0.86084 0.93990 0.96745 0.88914 1.20466 0.82249 0.88962 0.76864 1.90584 1.46151 1.53866 1.55270 1.47861 1.06673 1.13911 1.63617 1.19807 0.86252 0.88365 0.96663 1.21529 1.12741 1.21679 1.00860 0.92303 1.25543 0.96462 0.98634 0.96297 1.70013 1.22768 1.42147 1.22538 0.86075 0.79987 0.79424 0.79739 1.19500 1.21371 1.16647 1.21203 1.01766 0.83133 0.93157 1.22272 0.99038 0.90288 0.95513 1.62174 1.45038 1.06315 1.12761 1.22850 0.92654 0.94075 1.01659 1.22734 1.02396 0.94844 0.80871 1.87941 1.59295 1.61924 1.23035 1.22803 0.91058 0.86203 1.01097 1.22886 1.01488 0.99993 0.86792 1.88886 1.26724 1.73705 1.40400 0.93049 0.91588 0.88335 0.87527 0.90801 0.94120 0.92099 0.91179 0.93746 0.94031 0.92501 0.89745 0.91810 0.96183 0.89917 0.95290 0.89828 0.91594 0.86794 0.91677 0.86201 0.88260 0.94792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.65 71.98 0.69 -2.26 16 2 C 0.06 1.63 3.98 31.27 0.12 1.76 16 3 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.14 -3.74 6.14 31.89 0.20 -3.55 16 5 C -0.10 -3.32 3.64 -9.80 -0.04 -3.36 16 6 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 7 C -0.15 -5.85 8.03 71.98 0.58 -5.27 16 8 C 0.06 2.41 3.24 30.22 0.10 2.51 16 9 H 0.09 3.38 5.87 -2.39 -0.01 3.36 16 10 C 0.53 21.78 4.72 87.66 0.41 22.20 16 11 O -0.58 -26.73 16.01 14.24 0.23 -26.50 16 12 N -0.59 -23.40 1.82 -826.14 -1.50 -24.90 16 13 C 0.21 8.67 4.11 85.63 0.35 9.02 16 14 C -0.53 -25.80 9.26 25.60 0.24 -25.56 16 15 H 0.06 3.22 5.78 -2.91 -0.02 3.20 16 16 C 0.03 1.53 5.47 84.65 0.46 1.99 16 17 N -0.94 -52.25 13.96 21.45 0.30 -51.95 16 18 Si 0.92 38.29 27.39 68.60 1.88 40.17 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.24 -9.12 6.67 99.48 0.66 -8.45 16 22 C 0.13 4.75 5.32 86.38 0.46 5.21 16 23 C 0.06 1.84 5.28 86.30 0.46 2.30 16 24 N -0.54 -14.94 4.73 -895.20 -4.23 -19.17 16 25 C 0.02 0.43 5.44 86.31 0.47 0.90 16 26 C 0.07 1.52 7.01 72.02 0.50 2.03 16 27 O -0.40 -9.71 10.83 -148.98 -1.61 -11.32 16 28 C 0.07 1.29 7.01 72.01 0.50 1.79 16 29 C 0.02 0.37 5.64 86.31 0.49 0.86 16 30 O -0.38 -13.70 10.56 -131.69 -1.39 -15.09 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.10 1.50 8.14 -2.38 -0.02 1.49 16 34 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 2.06 7.67 -2.39 -0.02 2.04 16 36 H 0.04 1.58 7.45 -2.39 -0.02 1.56 16 37 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 3.07 3.30 -2.39 -0.01 3.06 16 39 H 0.04 1.77 5.02 -2.39 -0.01 1.76 16 40 H 0.04 1.64 7.31 -2.38 -0.02 1.62 16 41 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 42 H 0.08 3.17 8.07 -2.39 -0.02 3.16 16 43 H 0.06 2.42 5.88 -2.39 -0.01 2.41 16 44 H 0.02 0.71 8.12 -2.38 -0.02 0.69 16 45 H 0.08 2.50 8.04 -2.39 -0.02 2.48 16 46 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.08 2.34 6.38 -2.38 -0.02 2.33 16 48 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.10 1.99 8.09 -2.39 -0.02 1.97 16 53 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -64.14 401.23 0.52 -63.63 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.84 Total: 34.58 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 6.00 Total: 10.56 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -5.43 Total: -96.03 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -2.78 Total: -52.91 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.88 Total: 40.17 kcal Total: -64.14 0.52 -63.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330372283.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.444 kcal (2) G-P(sol) polarization free energy of solvation -64.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds