Wall clock time and date at job start Sat Apr 11 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 110.04819 * 2 1 4 4 O 1.43892 * 109.90714 * 238.81900 * 2 1 3 5 5 C 1.44429 * 106.99371 * 214.25574 * 4 2 1 6 6 C 1.55107 * 103.55720 * 39.73547 * 5 4 2 7 7 C 1.53558 * 109.90894 * 121.18150 * 2 1 3 8 8 C 1.52670 * 110.37346 * 239.75477 * 7 2 1 9 9 N 1.47268 * 108.39032 * 173.68588 * 8 7 2 10 10 C 1.34781 * 121.04150 * 130.39167 * 9 8 7 11 11 O 1.21588 * 119.99957 * 185.13628 * 10 9 8 12 12 N 1.34773 * 120.00155 * 5.13171 * 10 9 8 13 13 C 1.46500 * 120.00277 * 185.04806 * 12 10 9 14 14 C 1.52999 * 109.47320 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47103 * 59.99886 * 14 13 12 16 16 C 1.52996 * 109.46943 * 299.99833 * 14 13 12 17 17 C 1.50699 * 109.46845 * 179.97438 * 14 13 12 18 18 H 1.07992 * 120.00270 * 358.84488 * 17 14 13 19 19 C 1.37885 * 119.99691 * 178.84405 * 17 14 13 20 20 N 1.31511 * 119.99870 * 2.68824 * 19 17 14 21 21 Si 1.86792 * 120.00018 * 182.69259 * 19 17 14 22 22 H 1.48502 * 109.46854 * 265.00244 * 21 19 17 23 23 H 1.48496 * 109.47423 * 25.00044 * 21 19 17 24 24 H 1.48496 * 109.47694 * 145.00450 * 21 19 17 25 25 C 1.47161 * 117.91719 * 310.66420 * 9 8 7 26 26 C 1.52864 * 108.73637 * 50.71165 * 25 9 8 27 27 H 1.09000 * 109.35984 * 67.33587 * 26 25 9 28 28 C 1.52997 * 109.61787 * 187.40322 * 26 25 9 29 29 O 1.42234 * 110.66511 * 2.76391 * 7 2 1 30 30 H 1.09005 * 109.47089 * 298.81894 * 1 2 3 31 31 H 1.09000 * 109.47167 * 58.81497 * 1 2 3 32 32 H 1.08996 * 109.47200 * 178.82093 * 1 2 3 33 33 H 1.09001 * 110.60936 * 281.21345 * 5 4 2 34 34 H 1.09001 * 110.60510 * 158.24894 * 5 4 2 35 35 H 1.09001 * 110.92900 * 205.23046 * 6 5 4 36 36 H 1.09007 * 110.96341 * 81.58503 * 6 5 4 37 37 H 1.09000 * 109.67548 * 53.95905 * 8 7 2 38 38 H 1.09004 * 109.70546 * 293.43057 * 8 7 2 39 39 H 0.97005 * 119.99714 * 5.04620 * 12 10 9 40 40 H 1.08997 * 109.47115 * 59.99669 * 13 12 10 41 41 H 1.09005 * 109.46910 * 300.00026 * 13 12 10 42 42 H 1.08999 * 109.47123 * 176.31515 * 15 14 13 43 43 H 1.09000 * 109.46890 * 296.31690 * 15 14 13 44 44 H 1.08999 * 109.46855 * 56.31281 * 15 14 13 45 45 H 1.09004 * 109.47423 * 300.00088 * 16 14 13 46 46 H 1.09004 * 109.47408 * 59.99999 * 16 14 13 47 47 H 1.09005 * 109.47094 * 180.02562 * 16 14 13 48 48 H 0.97003 * 120.00221 * 180.02562 * 20 19 17 49 49 H 1.08995 * 109.63362 * 170.47899 * 25 9 8 50 50 H 1.09003 * 109.63061 * 291.06464 * 25 9 8 51 51 H 1.08997 * 109.46939 * 179.97438 * 28 26 25 52 52 H 1.08997 * 109.47093 * 299.92898 * 28 26 25 53 53 H 1.09004 * 109.47128 * 59.92677 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 8 2.0200 -0.7005 -1.1575 5 6 3.2372 -1.3699 -0.7619 6 6 2.9192 -1.8896 0.6644 7 6 2.0530 -0.7475 1.2352 8 6 2.9118 0.1786 2.0929 9 7 3.2627 -0.5309 3.3347 10 6 4.5376 -0.5832 3.7688 11 8 4.8207 -1.2513 4.7444 12 7 5.4986 0.1052 3.1215 13 6 6.8998 -0.0381 3.5243 14 6 7.7787 0.8447 2.6360 15 6 7.3514 2.3061 2.7871 16 6 7.6214 0.4157 1.1758 17 6 9.2200 0.6978 3.0508 18 1 9.4809 0.0549 3.8785 19 6 10.2057 1.3841 2.3736 20 7 9.8833 2.2075 1.4001 21 14 11.9988 1.1443 2.8388 22 1 12.4089 2.2059 3.7927 23 1 12.1715 -0.1864 3.4749 24 1 12.8416 1.2227 1.6187 25 6 2.1786 -1.1864 4.0836 26 6 1.3772 -2.0630 3.1213 27 1 1.9990 -2.8930 2.7856 28 6 0.1382 -2.6085 3.8340 29 8 0.9741 -1.2811 1.9930 30 1 -0.3633 0.4954 0.9004 31 1 -0.3633 0.5321 -0.8792 32 1 -0.3633 -1.0274 -0.0211 33 1 4.0706 -0.6678 -0.7375 34 1 3.4537 -2.2007 -1.4335 35 1 3.8326 -2.0137 1.2462 36 1 2.3563 -2.8222 0.6232 37 1 2.3509 1.0821 2.3322 38 1 3.8203 0.4430 1.5518 39 1 5.2625 0.6954 2.3889 40 1 7.2041 -1.0792 3.4172 41 1 7.0120 0.2680 4.5645 42 1 8.0189 2.9418 2.2053 43 1 6.3299 2.4251 2.4260 44 1 7.4011 2.5923 3.8376 45 1 7.9258 -0.6255 1.0682 46 1 6.5789 0.5222 0.8760 47 1 8.2479 1.0443 0.5429 48 1 10.5767 2.6901 0.9234 49 1 2.6021 -1.8053 4.8746 50 1 1.5239 -0.4304 4.5172 51 1 -0.4316 -3.2327 3.1457 52 1 0.4461 -3.2040 4.6934 53 1 -0.4823 -1.7780 4.1709 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331504948.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:10 Heat of formation + Delta-G solvation = -128.881136 kcal Electronic energy + Delta-G solvation = -32736.731929 eV Core-core repulsion = 28608.180965 eV Total energy + Delta-G solvation = -4128.550964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.27035 -40.75163 -39.02043 -38.12823 -35.97767 -35.08615 -34.30880 -32.66810 -32.49268 -31.41861 -28.71653 -28.03960 -27.58030 -27.30949 -26.00178 -25.25834 -23.77383 -22.60921 -21.58892 -20.68788 -20.37007 -19.32527 -18.02799 -17.81438 -17.68269 -17.33556 -16.74282 -16.67025 -16.53993 -16.28861 -15.67337 -15.46761 -15.23431 -14.99702 -14.91659 -14.70415 -14.25952 -14.10391 -13.81515 -13.63787 -13.41142 -13.22374 -13.13203 -13.11818 -13.07108 -12.97951 -12.69954 -12.59512 -12.55228 -12.37191 -12.27635 -12.13502 -12.07334 -11.92507 -11.71192 -11.50249 -11.33120 -11.14348 -11.05459 -10.73792 -10.71816 -10.39347 -10.12229 -9.47256 -8.02631 -6.18088 1.42170 1.45120 1.49047 1.55220 2.05179 2.38914 2.45274 2.77723 2.88376 3.21103 3.34310 3.45818 3.67685 3.78106 3.93081 3.99762 4.05918 4.20678 4.22482 4.32523 4.36068 4.38692 4.49632 4.50792 4.54896 4.65100 4.68932 4.72343 4.77084 4.85221 4.92511 4.95454 4.97025 5.00714 5.03165 5.07008 5.09330 5.18051 5.23600 5.34690 5.35331 5.41677 5.57088 5.65687 5.67148 5.80237 5.85319 6.11178 6.14351 6.20721 6.43482 6.85658 6.89732 7.48549 7.49741 8.96148 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.003184 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.767220 B = 8793.091908 C = 9859.235086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.085 3.915 3 H 0.095 0.905 4 O -0.383 6.383 5 C 0.047 3.953 6 C -0.175 4.175 7 C 0.085 3.915 8 C 0.090 3.910 9 N -0.628 5.628 10 C 0.703 3.297 11 O -0.633 6.633 12 N -0.725 5.725 13 C 0.167 3.833 14 C 0.053 3.947 15 C -0.120 4.120 16 C -0.117 4.117 17 C -0.528 4.528 18 H 0.044 0.956 19 C 0.030 3.970 20 N -0.897 5.897 21 Si 0.944 3.056 22 H -0.280 1.280 23 H -0.276 1.276 24 H -0.282 1.282 25 C 0.099 3.901 26 C 0.075 3.925 27 H 0.054 0.946 28 C -0.135 4.135 29 O -0.353 6.353 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.402 0.598 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.065 0.935 43 H 0.032 0.968 44 H 0.017 0.983 45 H 0.019 0.981 46 H 0.034 0.966 47 H 0.062 0.938 48 H 0.260 0.740 49 H 0.088 0.912 50 H 0.086 0.914 51 H 0.072 0.928 52 H 0.085 0.915 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.508 -4.726 -2.945 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.027 3.973 3 H 0.113 0.887 4 O -0.303 6.303 5 C -0.029 4.029 6 C -0.213 4.213 7 C 0.044 3.956 8 C -0.033 4.033 9 N -0.366 5.366 10 C 0.404 3.596 11 O -0.515 6.515 12 N -0.382 5.382 13 C 0.043 3.957 14 C 0.052 3.948 15 C -0.178 4.178 16 C -0.174 4.174 17 C -0.567 4.567 18 H 0.063 0.937 19 C -0.170 4.170 20 N -0.536 5.536 21 Si 0.771 3.229 22 H -0.207 1.207 23 H -0.201 1.201 24 H -0.208 1.208 25 C -0.024 4.024 26 C 0.017 3.983 27 H 0.072 0.928 28 C -0.192 4.192 29 O -0.272 6.272 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.241 0.759 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.051 0.949 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.053 0.947 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.106 0.894 50 H 0.105 0.895 51 H 0.091 0.909 52 H 0.103 0.897 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.470 -5.056 -2.627 22.213 hybrid contribution 1.846 0.050 0.334 1.877 sum -19.624 -5.007 -2.293 20.382 Atomic orbital electron populations 1.21593 0.91515 1.02924 1.02722 1.22752 0.97303 0.95273 0.81985 0.88727 1.88953 1.40360 1.67867 1.33121 1.23590 0.87490 0.97199 0.94609 1.23610 1.00535 0.99553 0.97575 1.22627 0.87507 0.93444 0.92007 1.22383 1.00395 0.95716 0.84808 1.47276 1.05220 1.57796 1.26318 1.16024 0.80949 0.80230 0.82384 1.90852 1.81836 1.48425 1.30371 1.45359 1.06594 1.47949 1.38253 1.21168 0.78076 0.98768 0.97689 1.18354 0.92478 0.91777 0.92198 1.21674 0.98134 0.99165 0.98804 1.21627 0.98242 0.98967 0.98605 1.21253 0.92187 1.27275 1.15962 0.93749 1.25418 1.01805 0.94709 0.95041 1.69894 1.33368 1.27476 1.22856 0.85767 0.81315 0.78213 0.77642 1.20652 1.20083 1.20780 1.22227 0.87706 0.97326 0.95099 1.22500 0.97431 0.92280 0.86090 0.92842 1.21698 0.95331 1.01847 1.00361 1.87899 1.30168 1.68672 1.40464 0.89965 0.91590 0.92408 0.91256 0.87490 0.91133 0.89580 0.88374 0.89090 0.75943 0.94491 0.94673 0.91613 0.94894 0.96429 0.96153 0.94743 0.91889 0.92999 0.89397 0.89541 0.90891 0.89670 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.62 71.98 0.62 -1.44 16 2 C 0.08 1.54 3.73 30.78 0.11 1.65 16 3 H 0.10 1.47 7.67 -2.39 -0.02 1.45 16 4 O -0.38 -8.38 11.20 -148.98 -1.67 -10.05 16 5 C 0.05 0.93 7.73 72.70 0.56 1.50 16 6 C -0.17 -3.62 5.15 31.75 0.16 -3.46 16 7 C 0.09 1.64 0.96 -10.28 -0.01 1.63 16 8 C 0.09 1.84 4.84 86.12 0.42 2.26 16 9 N -0.63 -16.33 2.69 -837.06 -2.25 -18.58 16 10 C 0.70 24.55 8.31 179.05 1.49 26.04 16 11 O -0.63 -27.24 15.82 -3.99 -0.06 -27.30 16 12 N -0.73 -25.26 4.84 -478.54 -2.32 -27.58 16 13 C 0.17 7.12 4.51 86.38 0.39 7.51 16 14 C 0.05 2.39 0.50 -52.93 -0.03 2.37 16 15 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 16 C -0.12 -5.01 8.07 71.98 0.58 -4.43 16 17 C -0.53 -27.61 8.01 25.60 0.21 -27.41 16 18 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 19 C 0.03 1.57 5.14 84.66 0.44 2.00 16 20 N -0.90 -47.01 9.34 21.45 0.20 -46.80 16 21 Si 0.94 42.17 29.54 68.60 2.03 44.20 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 C 0.10 2.18 5.90 86.21 0.51 2.69 16 26 C 0.08 1.38 3.13 30.55 0.10 1.48 16 27 H 0.05 1.11 6.96 -2.39 -0.02 1.10 16 28 C -0.13 -1.71 9.57 71.98 0.69 -1.02 16 29 O -0.35 -6.70 8.03 -148.98 -1.20 -7.89 16 30 H 0.08 1.15 7.94 -2.38 -0.02 1.13 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.03 7.82 -2.39 -0.02 1.01 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 1.71 7.61 -2.39 -0.02 1.69 16 36 H 0.09 1.77 7.70 -2.38 -0.02 1.75 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 1.87 5.89 -2.38 -0.01 1.86 16 39 H 0.40 12.29 3.87 -92.70 -0.36 11.93 16 40 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.07 3.22 5.97 -2.39 -0.01 3.21 16 43 H 0.03 1.21 6.97 -2.39 -0.02 1.19 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.03 1.22 6.86 -2.38 -0.02 1.20 16 47 H 0.06 3.02 6.08 -2.38 -0.01 3.01 16 48 H 0.26 13.15 8.31 -92.71 -0.77 12.38 16 49 H 0.09 2.24 7.06 -2.39 -0.02 2.22 16 50 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 53 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -62.13 397.20 2.08 -60.05 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.53 Total: 27.28 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 6.81 Total: 6.67 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -4.37 Total: -92.97 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -2.93 Total: -45.24 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -62.13 2.08 -60.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331504948.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.827 kcal (2) G-P(sol) polarization free energy of solvation -62.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds