Wall clock time and date at job start Sat Apr 11 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 O 1.42905 * 109.47079 * 119.99508 * 2 1 3 5 5 C 1.42898 * 113.99615 * 150.00204 * 4 2 1 6 6 H 1.09000 * 112.85228 * 339.66415 * 5 4 2 7 7 C 1.53788 * 113.61515 * 110.86630 * 5 4 2 8 8 C 1.54053 * 86.98447 * 89.15877 * 7 5 4 9 9 H 1.09002 * 113.61560 * 139.98084 * 8 7 5 10 10 N 1.46500 * 113.68900 * 270.87174 * 8 7 5 11 11 C 1.34771 * 120.00282 * 252.53392 * 10 8 7 12 12 O 1.21347 * 119.99820 * 359.97438 * 11 10 8 13 13 C 1.49451 * 120.00302 * 180.02562 * 11 10 8 14 14 O 1.21356 * 119.99696 * 0.02562 * 13 11 10 15 15 N 1.34771 * 120.00302 * 179.97438 * 13 11 10 16 16 C 1.46501 * 119.99911 * 180.02562 * 15 13 11 17 17 C 1.53004 * 109.46897 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47179 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47401 * 179.97438 * 18 17 16 20 20 H 1.08006 * 120.00048 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00221 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99804 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00011 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47168 * 89.99741 * 23 21 19 25 25 H 1.48503 * 109.47024 * 209.99784 * 23 21 19 26 26 H 1.48493 * 109.46989 * 329.99938 * 23 21 19 27 27 C 1.53782 * 87.07838 * 25.43341 * 8 7 5 28 28 C 1.53004 * 113.61269 * 220.02242 * 27 8 7 29 29 C 1.52994 * 113.61490 * 89.11807 * 27 8 7 30 30 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 31 31 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 32 32 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 34 34 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 36 36 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 37 37 H 1.09001 * 113.61210 * 203.66615 * 7 5 4 38 38 H 1.08999 * 113.60897 * 334.56467 * 7 5 4 39 39 H 0.97008 * 119.99903 * 72.53426 * 10 8 7 40 40 H 0.97000 * 120.00059 * 359.97438 * 15 13 11 41 41 H 1.09001 * 109.46728 * 299.99353 * 16 15 13 42 42 H 1.08995 * 109.47480 * 60.00052 * 16 15 13 43 43 H 1.09002 * 109.47232 * 299.99936 * 17 16 15 44 44 H 1.09009 * 109.47008 * 60.00002 * 17 16 15 45 45 H 1.09002 * 109.47320 * 300.00290 * 18 17 16 46 46 H 1.09002 * 109.47269 * 59.99810 * 18 17 16 47 47 H 0.96999 * 120.00179 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.47094 * 177.00111 * 28 27 8 49 49 H 1.08994 * 109.46979 * 297.00327 * 28 27 8 50 50 H 1.09002 * 109.46810 * 57.00095 * 28 27 8 51 51 H 1.09000 * 109.47253 * 302.99547 * 29 27 8 52 52 H 1.08999 * 109.47149 * 62.99585 * 29 27 8 53 53 H 1.09004 * 109.47163 * 182.99397 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 3.2660 -1.3244 0.9887 6 1 3.5006 -1.5131 -0.0589 7 6 4.4159 -0.6648 1.7684 8 6 4.0431 -1.5909 2.9417 9 1 4.9064 -1.9943 3.4709 10 7 3.0375 -1.0231 3.8432 11 6 3.3965 -0.5969 5.0703 12 8 4.5526 -0.6839 5.4287 13 6 2.3706 -0.0182 5.9901 14 8 1.2142 0.0675 5.6322 15 7 2.7294 0.4076 7.2174 16 6 1.7236 0.9743 8.1193 17 6 2.3886 1.3750 9.4377 18 6 1.3384 1.9675 10.3793 19 6 1.9932 2.3616 11.6781 20 1 3.0528 2.2055 11.8178 21 6 1.2399 2.9215 12.6880 22 7 -0.0503 3.1111 12.5181 23 14 2.0518 3.4106 14.2977 24 1 2.5226 4.8161 14.2076 25 1 1.0699 3.2875 15.4049 26 1 3.2085 2.5171 14.5602 27 6 3.4583 -2.5527 1.8939 28 6 2.1445 -3.2061 2.3275 29 6 4.4742 -3.5602 1.3521 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 5.4010 -0.8675 1.3481 38 1 4.2525 0.3926 1.9759 39 1 2.1133 -0.9539 3.5568 40 1 3.6535 0.3380 7.5039 41 1 1.2748 1.8533 7.6565 42 1 0.9502 0.2313 8.3140 43 1 2.8372 0.4958 9.9003 44 1 3.1623 2.1180 9.2433 45 1 0.8901 2.8467 9.9165 46 1 0.5644 1.2250 10.5737 47 1 -0.5803 3.5053 13.2285 48 1 1.7643 -3.8295 1.5181 49 1 2.3189 -3.8222 3.2095 50 1 1.4143 -2.4320 2.5636 51 1 5.3240 -3.0263 0.9268 52 1 4.8175 -4.2020 2.1635 53 1 4.0049 -4.1701 0.5802 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343328236.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:12 Heat of formation + Delta-G solvation = -139.511639 kcal Electronic energy + Delta-G solvation = -30183.869995 eV Core-core repulsion = 26054.858058 eV Total energy + Delta-G solvation = -4129.011937 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.15973 -41.09724 -39.45281 -38.08244 -37.17338 -35.35888 -34.50963 -33.16200 -33.04734 -31.42431 -29.07488 -28.20625 -28.08609 -26.83945 -25.29701 -24.01589 -23.30512 -22.38419 -22.24475 -21.29743 -20.22902 -19.16767 -18.48848 -17.96682 -17.39525 -17.18530 -16.80432 -16.50512 -16.40717 -16.27972 -16.05999 -15.98586 -15.21527 -15.06805 -14.80219 -14.40829 -14.32821 -14.26013 -13.99236 -13.78940 -13.53770 -13.34601 -13.23721 -13.08932 -13.02529 -12.96278 -12.79972 -12.76459 -12.71757 -12.55143 -12.40999 -12.28539 -12.03504 -11.71230 -11.60211 -11.56729 -11.51692 -11.24427 -11.03684 -10.70200 -10.55381 -10.35391 -10.33451 -10.15944 -8.19852 -6.30859 0.27963 1.25776 1.41724 1.42755 1.53925 2.07253 2.40401 2.45655 2.71452 3.13921 3.33085 3.41352 3.54469 3.76963 3.99570 4.03276 4.06867 4.16368 4.16626 4.23582 4.29926 4.38423 4.50874 4.54595 4.63493 4.72122 4.75280 4.81521 4.85000 4.87701 4.89976 4.92511 4.95044 4.98695 5.01383 5.09564 5.13370 5.14232 5.21041 5.30601 5.31721 5.33753 5.39228 5.48723 5.50904 5.69624 5.83682 5.91456 6.22374 6.32087 6.43524 6.70107 6.85915 6.90040 7.38408 8.92129 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018004 B = 0.001887 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.797873 B =14833.813410 C =15637.079330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 C -0.174 4.174 4 O -0.377 6.377 5 C 0.075 3.925 6 H 0.100 0.900 7 C -0.168 4.168 8 C 0.114 3.886 9 H 0.098 0.902 10 N -0.664 5.664 11 C 0.514 3.486 12 O -0.541 6.541 13 C 0.500 3.500 14 O -0.547 6.547 15 N -0.685 5.685 16 C 0.127 3.873 17 C -0.105 4.105 18 C 0.025 3.975 19 C -0.542 4.542 20 H 0.064 0.936 21 C -0.003 4.003 22 N -0.933 5.933 23 Si 0.966 3.034 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.262 1.262 27 C -0.083 4.083 28 C -0.134 4.134 29 C -0.123 4.123 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.419 0.581 40 H 0.419 0.581 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.067 0.933 45 H -0.004 1.004 46 H -0.004 1.004 47 H 0.263 0.737 48 H 0.071 0.929 49 H 0.050 0.950 50 H 0.052 0.948 51 H 0.075 0.925 52 H 0.065 0.935 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.804 -12.783 -32.756 36.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 C -0.231 4.231 4 O -0.296 6.296 5 C 0.017 3.983 6 H 0.117 0.883 7 C -0.207 4.207 8 C 0.009 3.991 9 H 0.117 0.883 10 N -0.317 5.317 11 C 0.294 3.706 12 O -0.419 6.419 13 C 0.280 3.720 14 O -0.426 6.426 15 N -0.338 5.338 16 C 0.004 3.996 17 C -0.143 4.143 18 C -0.013 4.013 19 C -0.580 4.580 20 H 0.082 0.918 21 C -0.200 4.200 22 N -0.574 5.574 23 Si 0.791 3.209 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.186 1.186 27 C -0.084 4.084 28 C -0.191 4.191 29 C -0.180 4.180 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.142 0.858 38 H 0.081 0.919 39 H 0.258 0.742 40 H 0.257 0.743 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.014 0.986 46 H 0.015 0.985 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.094 0.906 52 H 0.084 0.916 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.529 -12.717 -32.495 35.922 hybrid contribution -0.109 0.724 1.106 1.326 sum 8.420 -11.994 -31.389 34.641 Atomic orbital electron populations 1.21893 0.93530 1.02758 1.02646 1.22316 0.95039 0.92414 0.87774 1.22327 1.01485 0.96941 1.02387 1.87853 1.35580 1.69332 1.36828 1.23332 0.83732 0.92092 0.99182 0.88256 1.24046 1.00619 0.99562 0.96444 1.22318 0.91347 0.95571 0.89837 0.88348 1.45481 1.14114 1.59332 1.12744 1.19958 0.87861 0.79348 0.83420 1.90734 1.19620 1.55612 1.75918 1.20363 0.88487 0.79690 0.83424 1.90753 1.20254 1.55851 1.75702 1.45868 1.14196 1.59996 1.13721 1.21484 0.90628 0.97986 0.89488 1.21641 0.99008 1.00869 0.92792 1.18932 0.94063 0.94693 0.93578 1.21671 0.95524 1.40593 1.00189 0.91752 1.26001 0.95417 0.95805 1.02824 1.70098 1.07192 1.45227 1.34835 0.85425 0.78317 0.78845 0.78320 1.19828 1.20922 1.18624 1.22529 0.97200 0.94333 0.94294 1.21542 0.95936 1.00234 1.01408 1.21573 0.97417 0.97412 1.01600 0.93395 0.89675 0.91896 0.90199 0.92418 0.90339 0.93722 0.85779 0.91851 0.74225 0.74344 0.91838 0.91759 0.91408 0.91449 0.98579 0.98539 0.92777 0.90973 0.93119 0.92922 0.90575 0.91606 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.56 71.98 0.69 -1.14 16 2 C 0.08 0.98 3.34 30.60 0.10 1.09 16 3 C -0.17 -2.19 9.53 71.98 0.69 -1.51 16 4 O -0.38 -5.92 7.28 -148.98 -1.08 -7.00 16 5 C 0.07 0.87 3.74 31.12 0.12 0.99 16 6 H 0.10 0.71 7.42 -2.39 -0.02 0.70 16 7 C -0.17 -2.28 7.38 31.22 0.23 -2.05 16 8 C 0.11 1.98 3.78 45.61 0.17 2.16 16 9 H 0.10 1.87 7.42 -2.39 -0.02 1.86 16 10 N -0.66 -15.34 4.66 -440.93 -2.05 -17.39 16 11 C 0.51 14.53 7.89 87.27 0.69 15.22 16 12 O -0.54 -16.72 16.08 -3.24 -0.05 -16.77 16 13 C 0.50 15.97 7.89 87.27 0.69 16.66 16 14 O -0.55 -20.00 16.48 -3.26 -0.05 -20.05 16 15 N -0.69 -21.38 5.55 -464.41 -2.58 -23.96 16 16 C 0.13 4.54 5.67 86.38 0.49 5.03 16 17 C -0.11 -4.16 5.27 30.60 0.16 -4.00 16 18 C 0.03 1.31 4.97 29.85 0.15 1.45 16 19 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 20 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 21 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 22 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 23 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 26 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 27 C -0.08 -1.00 1.34 -51.65 -0.07 -1.07 16 28 C -0.13 -1.92 8.45 71.98 0.61 -1.31 16 29 C -0.12 -0.87 9.07 71.98 0.65 -0.22 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.08 0.64 7.42 -2.39 -0.02 0.63 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.12 1.07 7.63 -2.39 -0.02 1.05 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.42 10.01 5.51 -92.70 -0.51 9.50 16 40 H 0.42 11.73 7.94 -92.71 -0.74 10.99 16 41 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 45 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 46 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 47 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 48 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 49 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.05 0.94 5.64 -2.39 -0.01 0.93 16 51 H 0.08 0.35 7.32 -2.39 -0.02 0.34 16 52 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 53 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 Total: -1.00 -69.82 427.41 2.20 -67.63 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -0.35 Total: 26.74 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 6.06 Total: 1.28 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -4.35 Total: -98.14 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -1.19 Total: -43.82 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -69.82 2.20 -67.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343328236.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.886 kcal (2) G-P(sol) polarization free energy of solvation -69.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds