Wall clock time and date at job start Sat Apr 11 2020 06:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47061 * 2 1 4 4 C 1.53000 * 109.47480 * 120.00214 * 2 1 3 5 5 H 1.08998 * 109.47331 * 184.21406 * 4 2 1 6 6 C 1.52998 * 109.46893 * 304.21741 * 4 2 1 7 7 C 1.52998 * 109.47078 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47223 * 300.00129 * 7 6 4 9 9 H 1.09001 * 109.47220 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.46811 * 299.99722 * 8 7 6 11 11 C 1.52994 * 109.47424 * 59.99674 * 8 7 6 12 12 C 1.53003 * 109.46577 * 64.21367 * 4 2 1 13 13 H 1.08998 * 109.47322 * 300.00045 * 12 4 2 14 14 O 1.42896 * 109.47381 * 60.00686 * 12 4 2 15 15 C 1.42899 * 114.00162 * 210.00007 * 14 12 4 16 16 C 1.50700 * 109.47280 * 179.97438 * 15 14 12 17 17 O 1.21275 * 119.99960 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99651 * 179.97438 * 16 15 14 19 19 C 1.46504 * 119.99564 * 179.97438 * 18 16 15 20 20 C 1.50704 * 109.47031 * 179.97438 * 19 18 16 21 21 O 1.21291 * 119.99695 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99750 * 180.02562 * 20 19 18 23 23 C 1.37101 * 119.99528 * 180.02562 * 22 20 19 24 24 H 1.07998 * 120.00048 * 359.97438 * 23 22 20 25 25 C 1.38948 * 119.99808 * 180.02562 * 23 22 20 26 26 N 1.31412 * 119.99911 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00080 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47184 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47334 * 119.99975 * 27 25 23 30 30 H 1.48503 * 109.46916 * 239.99873 * 27 25 23 31 31 H 1.08996 * 109.47620 * 299.99612 * 1 2 3 32 32 H 1.09003 * 109.47276 * 59.99983 * 1 2 3 33 33 H 1.09001 * 109.47207 * 179.97438 * 1 2 3 34 34 H 1.09009 * 109.47324 * 240.00531 * 2 1 3 35 35 H 1.09001 * 109.47624 * 294.36598 * 3 2 1 36 36 H 1.08998 * 109.46990 * 54.37134 * 3 2 1 37 37 H 1.09002 * 109.47069 * 174.36317 * 3 2 1 38 38 H 1.08998 * 109.47406 * 59.99711 * 6 4 2 39 39 H 1.08996 * 109.46877 * 299.99547 * 6 4 2 40 40 H 1.09000 * 109.47475 * 179.97438 * 7 6 4 41 41 H 1.08998 * 109.46960 * 59.99779 * 7 6 4 42 42 H 1.09001 * 109.46661 * 60.00353 * 10 8 7 43 43 H 1.09004 * 109.47011 * 179.97438 * 10 8 7 44 44 H 1.08996 * 109.47125 * 300.00350 * 10 8 7 45 45 H 1.09008 * 109.47124 * 60.00059 * 11 8 7 46 46 H 1.09000 * 109.47692 * 179.97438 * 11 8 7 47 47 H 1.09006 * 109.46477 * 299.99565 * 15 14 12 48 48 H 1.09002 * 109.47388 * 59.99114 * 15 14 12 49 49 H 0.96998 * 120.00784 * 0.02562 * 18 16 15 50 50 H 1.08997 * 109.47361 * 300.00093 * 19 18 16 51 51 H 1.09007 * 109.46911 * 60.00206 * 19 18 16 52 52 H 0.96994 * 120.00402 * 359.97438 * 22 20 19 53 53 H 0.97000 * 120.00207 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1274 -0.6563 1.2877 6 6 1.4453 -0.0639 2.4962 7 6 1.9548 -0.7856 3.7453 8 6 1.5328 -2.2553 3.6931 9 1 1.8955 -2.7693 4.5833 10 6 0.0064 -2.3460 3.6387 11 6 2.1275 -2.9127 2.4461 12 6 1.6184 -2.1911 1.1972 13 1 0.5310 -2.2561 1.1586 14 8 2.1738 -2.8051 0.0325 15 6 1.3820 -3.8705 -0.4967 16 6 2.0584 -4.4412 -1.7164 17 8 3.1144 -3.9807 -2.0954 18 7 1.4898 -5.4634 -2.3859 19 6 2.1472 -6.0179 -3.5720 20 6 1.3127 -7.1423 -4.1293 21 8 0.2712 -7.4498 -3.5892 22 7 1.7239 -7.8061 -5.2279 23 6 0.9645 -8.8286 -5.7351 24 1 0.0371 -9.1025 -5.2542 25 6 1.3885 -9.5133 -6.8674 26 7 2.5173 -9.1804 -7.4523 27 14 0.3542 -10.9070 -7.5582 28 1 -0.8605 -11.0832 -6.7224 29 1 -0.0454 -10.5835 -8.9512 30 1 1.1468 -12.1629 -7.5496 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.7613 1.9265 -0.9361 36 1 1.5966 1.9846 0.8353 37 1 3.1252 1.4442 0.1009 38 1 0.3579 -0.1289 2.4576 39 1 1.7456 0.9832 2.5332 40 1 1.5315 -0.3170 4.6338 41 1 3.0422 -0.7210 3.7841 42 1 -0.3565 -1.8319 2.7487 43 1 -0.2942 -3.3930 3.6011 44 1 -0.4172 -1.8776 4.5271 45 1 3.2150 -2.8481 2.4848 46 1 1.8272 -3.9599 2.4091 47 1 1.2722 -4.6505 0.2568 48 1 0.3982 -3.4900 -0.7717 49 1 0.6451 -5.8315 -2.0831 50 1 2.2559 -5.2377 -4.3254 51 1 3.1314 -6.3978 -3.2977 52 1 2.5566 -7.5599 -5.6600 53 1 2.8132 -9.6581 -8.2429 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343517128.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:23 Heat of formation + Delta-G solvation = -173.343996 kcal Electronic energy + Delta-G solvation = -30346.244083 eV Core-core repulsion = 26215.765065 eV Total energy + Delta-G solvation = -4130.479018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.34727 -40.82021 -39.87148 -37.69738 -36.46091 -36.25818 -35.31533 -33.39367 -31.34586 -31.22673 -29.99522 -28.14552 -27.94259 -27.31856 -26.11511 -24.19349 -23.11245 -21.69990 -21.40518 -20.48206 -20.10117 -19.47725 -18.59031 -18.07993 -17.37115 -17.18105 -16.76874 -16.52457 -16.29123 -16.21883 -15.82447 -15.57251 -15.39423 -15.13956 -14.92776 -14.80048 -14.40929 -14.22534 -13.96306 -13.66645 -13.60157 -13.56358 -13.54753 -13.21602 -13.05118 -12.92317 -12.80308 -12.54743 -12.45469 -12.20650 -12.11337 -12.06316 -11.84841 -11.65480 -11.58951 -11.51183 -11.22778 -11.06421 -10.88663 -10.86029 -10.57826 -10.31996 -10.21529 -10.09765 -8.52079 -6.02437 1.34431 1.42500 1.51578 1.56254 1.71025 1.89163 2.28258 2.90597 3.13413 3.15004 3.60465 3.70360 3.77682 3.95865 4.08765 4.15582 4.16206 4.19143 4.21335 4.21662 4.29886 4.39170 4.41742 4.42921 4.47107 4.53020 4.55356 4.70137 4.80478 4.85765 4.88326 4.99245 5.00800 5.06727 5.11928 5.13612 5.16256 5.20664 5.21455 5.31740 5.37494 5.37790 5.39256 5.44611 5.54061 5.59571 5.65176 5.90565 6.17526 6.44978 6.51813 7.02205 7.13175 7.42814 7.92336 8.65029 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021804 B = 0.001868 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.862872 B =14989.579727 C =15502.718639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.071 4.071 5 H 0.059 0.941 6 C -0.111 4.111 7 C -0.116 4.116 8 C -0.086 4.086 9 H 0.075 0.925 10 C -0.153 4.153 11 C -0.138 4.138 12 C 0.088 3.912 13 H 0.081 0.919 14 O -0.380 6.380 15 C 0.052 3.948 16 C 0.512 3.488 17 O -0.570 6.570 18 N -0.704 5.704 19 C 0.122 3.878 20 C 0.434 3.566 21 O -0.622 6.622 22 N -0.560 5.560 23 C -0.336 4.336 24 H 0.088 0.912 25 C -0.013 4.013 26 N -0.916 5.916 27 Si 0.998 3.002 28 H -0.269 1.269 29 H -0.271 1.271 30 H -0.272 1.272 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.416 0.584 50 H 0.093 0.907 51 H 0.093 0.907 52 H 0.399 0.601 53 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 19.162 22.202 29.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.090 4.090 5 H 0.077 0.923 6 C -0.148 4.148 7 C -0.154 4.154 8 C -0.104 4.104 9 H 0.093 0.907 10 C -0.211 4.211 11 C -0.176 4.176 12 C 0.031 3.969 13 H 0.099 0.901 14 O -0.299 6.299 15 C -0.028 4.028 16 C 0.299 3.701 17 O -0.449 6.449 18 N -0.360 5.360 19 C -0.006 4.006 20 C 0.221 3.779 21 O -0.510 6.510 22 N -0.195 5.195 23 C -0.465 4.465 24 H 0.106 0.894 25 C -0.213 4.213 26 N -0.557 5.557 27 Si 0.821 3.179 28 H -0.193 1.193 29 H -0.197 1.197 30 H -0.197 1.197 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.255 0.745 50 H 0.111 0.889 51 H 0.111 0.889 52 H 0.233 0.767 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.487 19.266 22.025 29.469 hybrid contribution -0.057 -1.101 -0.873 1.406 sum -3.544 18.165 21.152 28.106 Atomic orbital electron populations 1.21942 0.94506 1.01653 1.02414 1.21055 0.96449 0.96312 0.97418 1.21840 1.00682 0.95479 1.02095 1.21196 1.00167 0.92005 0.95649 0.92297 1.21695 1.01419 0.99517 0.92187 1.21609 1.00770 0.94677 0.98296 1.21050 0.96357 0.96222 0.96779 0.90655 1.21977 0.94597 1.01942 1.02538 1.22072 1.00870 0.99724 0.94887 1.22454 0.98082 0.92695 0.83624 0.90134 1.88012 1.48204 1.48748 1.44939 1.22218 0.94798 0.92344 0.93436 1.20877 0.85069 0.79108 0.85032 1.90695 1.24126 1.60959 1.69080 1.45567 1.26951 1.35060 1.28443 1.20761 0.95918 0.95003 0.88876 1.20365 0.87912 0.86407 0.83209 1.90469 1.27252 1.70818 1.62488 1.41864 1.22842 1.30370 1.24461 1.19782 1.05544 1.10828 1.10346 0.89438 1.26159 0.97686 1.01160 0.96302 1.69689 1.21854 1.42596 1.21514 0.84793 0.77946 0.77118 0.78013 1.19308 1.19666 1.19689 0.90787 0.92975 0.93066 0.93298 0.92995 0.91100 0.93367 0.90155 0.90492 0.90450 0.92488 0.92016 0.92758 0.91655 0.92530 0.91786 0.87978 0.87841 0.74516 0.88906 0.88932 0.76734 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.47 71.98 0.61 -1.47 16 2 C -0.09 -1.63 2.62 -10.80 -0.03 -1.66 16 3 C -0.14 -2.13 8.79 71.98 0.63 -1.50 16 4 C -0.07 -1.17 1.72 -10.79 -0.02 -1.19 16 5 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 6 C -0.11 -1.22 4.21 30.59 0.13 -1.09 16 7 C -0.12 -1.22 5.45 30.59 0.17 -1.05 16 8 C -0.09 -0.99 3.19 -10.79 -0.03 -1.03 16 9 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 10 C -0.15 -1.50 8.50 71.98 0.61 -0.89 16 11 C -0.14 -2.22 5.06 30.58 0.15 -2.07 16 12 C 0.09 1.56 1.51 30.58 0.05 1.61 16 13 H 0.08 1.19 4.47 -2.39 -0.01 1.18 16 14 O -0.38 -9.64 8.77 -129.94 -1.14 -10.78 16 15 C 0.05 1.16 6.23 71.24 0.44 1.60 16 16 C 0.51 16.16 7.91 87.66 0.69 16.86 16 17 O -0.57 -22.83 16.50 16.02 0.26 -22.56 16 18 N -0.70 -22.65 5.53 -466.77 -2.58 -25.23 16 19 C 0.12 4.48 6.15 85.63 0.53 5.01 16 20 C 0.43 19.88 7.85 87.66 0.69 20.56 16 21 O -0.62 -31.59 15.24 -3.07 -0.05 -31.63 16 22 N -0.56 -28.08 5.29 -306.98 -1.62 -29.71 16 23 C -0.34 -18.41 9.68 84.04 0.81 -17.60 16 24 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 25 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 26 N -0.92 -48.75 13.05 21.66 0.28 -48.46 16 27 Si 1.00 41.61 29.55 68.60 2.03 43.64 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 29 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 30 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 31 H 0.07 0.78 6.35 -2.39 -0.02 0.76 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.72 6.54 -2.39 -0.02 0.71 16 34 H 0.05 1.18 7.56 -2.38 -0.02 1.16 16 35 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.80 6.83 -2.39 -0.02 0.79 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.75 4.64 -2.39 -0.01 0.74 16 39 H 0.08 0.75 6.67 -2.39 -0.02 0.73 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.59 4.81 -2.39 -0.01 0.58 16 43 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.06 1.02 7.87 -2.39 -0.02 1.00 16 47 H 0.10 1.81 7.87 -2.38 -0.02 1.79 16 48 H 0.10 1.80 8.09 -2.39 -0.02 1.78 16 49 H 0.42 12.64 7.44 -92.71 -0.69 11.95 16 50 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 51 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 52 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 53 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -68.32 408.27 2.59 -65.73 By element: Atomic # 1 Polarization: 43.60 SS G_CDS: -0.50 Total: 43.10 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 5.90 Total: 15.91 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -3.92 Total: -103.40 kcal Atomic # 8 Polarization: -64.05 SS G_CDS: -0.92 Total: -64.98 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -68.32 2.59 -65.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343517128.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.615 kcal (2) G-P(sol) polarization free energy of solvation -68.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds