Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47482 * 2 1 4 4 O 1.42894 * 109.47003 * 120.00431 * 2 1 3 5 5 C 1.42900 * 114.00094 * 149.99457 * 4 2 1 6 6 C 1.52999 * 109.47616 * 270.00173 * 5 4 2 7 7 C 1.52997 * 109.47317 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47060 * 59.99960 * 7 6 5 9 9 N 1.46499 * 109.46840 * 180.02562 * 8 7 6 10 10 C 1.34778 * 119.99771 * 204.99940 * 9 8 7 11 11 O 1.21346 * 120.00491 * 359.97438 * 10 9 8 12 12 C 1.49450 * 119.99883 * 180.02562 * 10 9 8 13 13 O 1.21351 * 120.00187 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99883 * 180.02562 * 12 10 9 15 15 C 1.46507 * 119.99972 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47287 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47347 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47355 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99789 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00384 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99506 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00093 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47160 * 89.99989 * 22 20 18 24 24 H 1.48504 * 109.47015 * 209.99667 * 22 20 18 25 25 H 1.48501 * 109.47515 * 329.99882 * 22 20 18 26 26 C 1.53002 * 109.47233 * 299.99657 * 8 7 6 27 27 C 1.52997 * 109.46817 * 60.00194 * 26 8 7 28 28 H 1.09003 * 109.47003 * 300.00530 * 1 2 3 29 29 H 1.09002 * 109.46789 * 59.99234 * 1 2 3 30 30 H 1.08993 * 109.47561 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46748 * 240.00170 * 2 1 3 32 32 H 1.09001 * 109.46826 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46896 * 300.00537 * 3 2 1 34 34 H 1.09000 * 109.46718 * 59.99742 * 3 2 1 35 35 H 1.09002 * 109.47002 * 29.99905 * 5 4 2 36 36 H 1.08996 * 109.46929 * 59.99102 * 6 5 4 37 37 H 1.09002 * 109.46716 * 299.99907 * 6 5 4 38 38 H 1.09002 * 109.47153 * 299.99641 * 7 6 5 39 39 H 1.09001 * 109.46832 * 179.97438 * 7 6 5 40 40 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 41 41 H 0.97006 * 120.00568 * 24.99713 * 9 8 7 42 42 H 0.96993 * 120.00301 * 359.97438 * 14 12 10 43 43 H 1.09005 * 109.46911 * 299.99865 * 15 14 12 44 44 H 1.08999 * 109.47250 * 59.99592 * 15 14 12 45 45 H 1.09003 * 109.46774 * 300.00229 * 16 15 14 46 46 H 1.09001 * 109.46710 * 59.99484 * 16 15 14 47 47 H 1.09005 * 109.46998 * 300.00118 * 17 16 15 48 48 H 1.08999 * 109.47103 * 59.99807 * 17 16 15 49 49 H 0.97000 * 120.00020 * 179.97438 * 21 20 18 50 50 H 1.08993 * 109.47662 * 180.02562 * 26 8 7 51 51 H 1.09002 * 109.47075 * 300.00932 * 26 8 7 52 52 H 1.09002 * 109.47153 * 60.00231 * 27 26 8 53 53 H 1.09001 * 109.47289 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2659 -1.3247 0.9885 6 6 3.0354 -2.7590 0.5084 7 6 4.3841 -3.4557 0.3170 8 6 5.1397 -3.4783 1.6472 9 7 6.4313 -4.1448 1.4638 10 6 7.0419 -4.7313 2.5125 11 8 6.5221 -4.7068 3.6087 12 6 8.3598 -5.4108 2.3255 13 8 8.8799 -5.4349 1.2294 14 7 8.9702 -5.9977 3.3741 15 6 10.2624 -6.6633 3.1909 16 6 10.7323 -7.2414 4.5272 17 6 12.0814 -7.9371 4.3358 18 6 12.5440 -8.5070 5.6520 19 1 11.9366 -8.3848 6.5366 20 6 13.7430 -9.1835 5.7271 21 7 14.4828 -9.3317 4.6499 22 14 14.3166 -9.8893 7.3586 23 1 13.8091 -11.2774 7.5033 24 1 15.8011 -9.8983 7.3995 25 1 13.7959 -9.0534 8.4701 26 6 5.3703 -2.0439 2.1273 27 6 4.0217 -1.3473 2.3187 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.8530 -0.7832 0.2467 36 1 2.4974 -2.7428 -0.4394 37 1 2.4484 -3.3004 1.2502 38 1 4.9708 -2.9141 -0.4250 39 1 4.2198 -4.4776 -0.0246 40 1 4.5531 -4.0198 2.3892 41 1 6.8471 -4.1642 0.5876 42 1 8.5543 -5.9787 4.2501 43 1 10.1566 -7.4682 2.4635 44 1 10.9950 -5.9415 2.8300 45 1 10.8381 -6.4361 5.2543 46 1 9.9997 -7.9631 4.8885 47 1 11.9751 -8.7423 3.6089 48 1 12.8142 -7.2156 3.9743 49 1 15.3266 -9.8073 4.7027 50 1 5.9090 -2.0600 3.0746 51 1 5.9569 -1.5023 1.3852 52 1 3.4350 -1.8889 3.0607 53 1 4.1858 -0.3253 2.6602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332598085.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -179.683466 kcal Electronic energy + Delta-G solvation = -28942.979038 eV Core-core repulsion = 24812.225119 eV Total energy + Delta-G solvation = -4130.753918 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.85701 -40.51757 -39.59488 -38.08527 -37.14987 -35.44492 -34.94579 -33.19140 -33.03111 -31.87339 -29.79264 -28.83735 -28.07556 -26.18113 -24.46338 -23.86654 -22.86302 -22.36877 -22.00280 -21.44238 -20.92644 -19.45352 -18.51890 -18.01437 -17.92933 -17.18515 -17.01271 -16.66384 -16.40760 -16.17296 -15.97643 -15.85313 -15.18441 -15.04172 -14.95099 -14.62326 -14.41668 -14.27860 -14.00860 -13.77953 -13.69781 -13.51160 -13.25716 -13.11750 -13.03179 -12.91025 -12.75942 -12.58500 -12.54166 -12.48826 -12.40337 -12.19268 -12.10049 -11.72282 -11.70097 -11.59518 -11.54771 -11.25886 -11.23413 -10.69509 -10.54569 -10.43193 -10.31095 -10.21152 -8.19386 -6.30251 0.29962 1.26536 1.42445 1.43058 1.54228 2.09793 2.41650 2.55216 2.75122 3.14753 3.38731 3.59567 3.67174 3.94579 4.05493 4.07984 4.10236 4.16773 4.18006 4.18956 4.26193 4.33134 4.38702 4.45594 4.52416 4.54324 4.70518 4.76583 4.86503 4.88199 4.91429 4.93423 4.97072 5.01493 5.04477 5.11125 5.14171 5.14799 5.17615 5.22754 5.27417 5.32725 5.34487 5.39798 5.51676 5.70818 5.84540 5.89652 6.23181 6.33171 6.41893 6.70544 6.86632 6.90714 7.39249 8.92541 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.040226 B = 0.001382 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.894296 B =20249.156455 C =20502.762803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.074 3.926 3 C -0.174 4.174 4 O -0.395 6.395 5 C 0.089 3.911 6 C -0.131 4.131 7 C -0.117 4.117 8 C 0.140 3.860 9 N -0.684 5.684 10 C 0.515 3.485 11 O -0.539 6.539 12 C 0.501 3.499 13 O -0.547 6.547 14 N -0.687 5.687 15 C 0.127 3.873 16 C -0.106 4.106 17 C 0.025 3.975 18 C -0.543 4.543 19 H 0.064 0.936 20 C 0.000 4.000 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.263 1.263 26 C -0.122 4.122 27 C -0.108 4.108 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.420 0.580 42 H 0.419 0.581 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.066 0.934 47 H -0.003 1.003 48 H -0.003 1.003 49 H 0.263 0.737 50 H 0.058 0.942 51 H 0.081 0.919 52 H 0.063 0.937 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.191 20.742 -12.747 38.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.017 3.983 3 C -0.232 4.232 4 O -0.315 6.315 5 C 0.032 3.968 6 C -0.170 4.170 7 C -0.155 4.155 8 C 0.037 3.963 9 N -0.336 5.336 10 C 0.296 3.704 11 O -0.416 6.416 12 C 0.281 3.719 13 O -0.425 6.425 14 N -0.339 5.339 15 C 0.004 3.996 16 C -0.144 4.144 17 C -0.013 4.013 18 C -0.581 4.581 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.573 5.573 22 Si 0.789 3.211 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.187 1.187 26 C -0.161 4.161 27 C -0.146 4.146 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.258 0.742 42 H 0.256 0.744 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.015 0.985 48 H 0.015 0.985 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.099 0.901 52 H 0.082 0.918 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -29.138 20.668 -12.632 37.892 hybrid contribution 0.959 -0.593 0.594 1.275 sum -28.179 20.075 -12.038 36.633 Atomic orbital electron populations 1.21879 0.93246 1.02643 1.02897 1.22278 0.95406 0.92604 0.88050 1.22312 1.01435 0.96586 1.02851 1.87953 1.37052 1.69860 1.36664 1.22192 0.84689 0.92619 0.97324 1.21936 0.96778 0.95612 1.02625 1.21734 0.95886 1.02632 0.95226 1.21283 0.82519 0.92952 0.99561 1.45829 1.22091 1.53748 1.11978 1.19953 0.85479 0.79743 0.85269 1.90763 1.65856 1.59619 1.25400 1.20366 0.86429 0.80220 0.84839 1.90748 1.66602 1.59818 1.25378 1.45896 1.21891 1.53613 1.12527 1.21479 0.82832 0.96331 0.98944 1.21644 0.98029 0.99819 0.94937 1.18933 0.91972 0.94438 0.95941 1.21683 1.05185 1.35082 0.96190 0.91821 1.25954 0.96910 0.96608 1.00270 1.70094 1.13696 1.43108 1.30403 0.85460 0.77245 0.78882 0.79531 1.19860 1.20913 1.18678 1.21835 0.97490 0.94690 1.02079 1.21459 0.94696 1.01354 0.97079 0.92618 0.89742 0.92293 0.91168 0.92630 0.90337 0.92650 0.90925 0.89959 0.91541 0.89303 0.89945 0.90185 0.74210 0.74382 0.91687 0.91699 0.91501 0.91489 0.98504 0.98491 0.92790 0.92356 0.90076 0.91796 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.56 71.98 0.69 -0.55 16 2 C 0.07 0.71 3.13 30.60 0.10 0.81 16 3 C -0.17 -1.48 9.52 71.98 0.69 -0.79 16 4 O -0.40 -5.58 9.63 -148.98 -1.44 -7.01 16 5 C 0.09 0.99 2.40 30.60 0.07 1.07 16 6 C -0.13 -1.25 5.53 30.59 0.17 -1.08 16 7 C -0.12 -1.06 5.39 30.59 0.16 -0.89 16 8 C 0.14 2.03 2.45 44.99 0.11 2.14 16 9 N -0.68 -12.12 5.07 -443.88 -2.25 -14.37 16 10 C 0.52 12.66 7.85 87.27 0.69 13.34 16 11 O -0.54 -15.37 16.14 -3.23 -0.05 -15.42 16 12 C 0.50 14.32 7.89 87.27 0.69 15.01 16 13 O -0.55 -17.83 16.48 -3.25 -0.05 -17.89 16 14 N -0.69 -19.92 5.55 -464.39 -2.58 -22.50 16 15 C 0.13 4.32 5.67 86.38 0.49 4.81 16 16 C -0.11 -4.09 5.27 30.59 0.16 -3.92 16 17 C 0.02 1.27 4.97 29.85 0.15 1.42 16 18 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 19 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 20 C 0.00 0.03 5.46 84.66 0.46 0.49 16 21 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 22 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 26 C -0.12 -1.71 5.49 30.59 0.17 -1.54 16 27 C -0.11 -1.42 5.57 30.60 0.17 -1.25 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.51 7.62 -2.38 -0.02 0.49 16 32 H 0.05 0.48 7.96 -2.39 -0.02 0.46 16 33 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 0.65 7.62 -2.39 -0.02 0.63 16 36 H 0.08 0.61 7.96 -2.39 -0.02 0.59 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 1.45 7.58 -2.39 -0.02 1.43 16 41 H 0.42 6.32 8.07 -92.70 -0.75 5.57 16 42 H 0.42 10.96 7.94 -92.71 -0.74 10.22 16 43 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 48 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 49 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 50 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 53 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -68.73 429.68 0.54 -68.19 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -0.60 Total: 20.25 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 5.20 Total: -1.00 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -4.54 Total: -92.97 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -1.54 Total: -40.32 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -68.73 0.54 -68.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332598085.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.490 kcal (2) G-P(sol) polarization free energy of solvation -68.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds