Wall clock time and date at job start Sat Apr 11 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47405 * 2 1 4 4 O 1.42893 * 109.47201 * 179.97438 * 3 2 1 5 5 C 1.42900 * 113.99956 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47202 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99969 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00091 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99873 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47101 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.54133 * 59.29928 * 10 9 8 12 12 C 1.55091 * 110.60789 * 182.15058 * 10 9 8 13 13 C 1.54323 * 101.96809 * 155.14521 * 12 10 9 14 14 C 1.53586 * 104.68363 * 339.36722 * 13 12 10 15 15 O 1.44028 * 107.19749 * 358.03027 * 14 13 12 16 16 C 1.52421 * 110.04074 * 220.63765 * 13 12 10 17 17 C 1.53299 * 109.39054 * 297.92784 * 16 13 12 18 18 N 1.46933 * 108.72180 * 306.29515 * 17 16 13 19 19 C 1.36938 * 120.56921 * 234.15147 * 18 17 16 20 20 H 1.07994 * 120.00199 * 27.87847 * 19 18 17 21 21 C 1.38813 * 119.99354 * 207.87808 * 19 18 17 22 22 N 1.31615 * 120.00472 * 17.44221 * 21 19 18 23 23 Si 1.86805 * 119.99654 * 197.43836 * 21 19 18 24 24 H 1.48499 * 109.47082 * 90.00488 * 23 21 19 25 25 H 1.48503 * 109.46856 * 210.00708 * 23 21 19 26 26 H 1.48502 * 109.46917 * 330.00119 * 23 21 19 27 27 C 1.46930 * 118.85590 * 54.13092 * 18 17 16 28 28 C 1.52436 * 110.02709 * 98.06138 * 13 12 10 29 29 H 1.09004 * 109.47254 * 300.00099 * 1 2 3 30 30 H 1.08997 * 109.47230 * 59.99905 * 1 2 3 31 31 H 1.09009 * 109.47243 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47254 * 239.99901 * 2 1 3 33 33 H 1.08998 * 109.46826 * 120.00448 * 2 1 3 34 34 H 1.08997 * 109.47004 * 300.00233 * 3 2 1 35 35 H 1.09004 * 109.46996 * 59.99743 * 3 2 1 36 36 H 1.09001 * 109.47376 * 300.00300 * 5 4 3 37 37 H 1.08999 * 109.47356 * 60.00454 * 5 4 3 38 38 H 0.96999 * 119.99734 * 0.02562 * 8 6 5 39 39 H 1.08999 * 109.47673 * 299.99927 * 9 8 6 40 40 H 1.08998 * 109.47105 * 60.00387 * 9 8 6 41 41 H 1.09007 * 110.93319 * 273.31220 * 12 10 9 42 42 H 1.09004 * 110.93503 * 36.94076 * 12 10 9 43 43 H 1.08997 * 109.90977 * 117.27777 * 14 13 12 44 44 H 1.09002 * 109.90583 * 238.34735 * 14 13 12 45 45 H 1.09002 * 109.48631 * 57.89898 * 16 13 12 46 46 H 1.08999 * 109.48335 * 177.95480 * 16 13 12 47 47 H 1.09004 * 109.59550 * 186.52837 * 17 16 13 48 48 H 1.08994 * 109.72180 * 66.14245 * 17 16 13 49 49 H 0.96999 * 120.00510 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.59813 * 186.09088 * 27 18 17 51 51 H 1.09005 * 109.72498 * 65.69858 * 27 18 17 52 52 H 1.08991 * 109.48927 * 182.04357 * 28 13 12 53 53 H 1.09004 * 109.48451 * 302.07539 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0502 2.7478 0.0012 6 6 5.5525 2.6288 0.0012 7 8 6.0741 1.5339 0.0012 8 7 6.3165 3.7392 0.0023 9 6 7.7769 3.6234 0.0028 10 6 8.3993 5.0212 0.0046 11 1 8.0784 5.5815 0.8827 12 6 9.9466 4.9298 -0.0492 13 6 10.3258 6.2886 -0.6748 14 6 9.0468 6.7628 -1.3806 15 8 8.0564 5.7319 -1.2052 16 6 11.4538 6.1029 -1.6830 17 6 12.6953 5.5630 -0.9639 18 7 13.0108 6.4508 0.1635 19 6 14.2593 6.9989 0.2902 20 1 14.8631 7.1755 -0.5876 21 6 14.7487 7.3274 1.5470 22 7 14.1917 6.8164 2.6244 23 14 16.1981 8.4947 1.7090 24 1 15.7008 9.8902 1.8113 25 1 16.9735 8.1547 2.9290 26 1 17.0723 8.3669 0.5154 27 6 11.9635 6.7408 1.1524 28 6 10.7274 7.2725 0.4180 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.7290 3.2891 -0.8887 37 1 3.7283 3.2885 0.8913 38 1 5.8993 4.6149 0.0034 39 1 8.0982 3.0819 0.8925 40 1 8.0989 3.0832 -0.8874 41 1 10.3660 4.8315 0.9521 42 1 10.2661 4.1047 -0.6859 43 1 8.6963 7.6911 -0.9295 44 1 9.2438 6.9171 -2.4415 45 1 11.1420 5.3952 -2.4511 46 1 11.6896 7.0614 -2.1454 47 1 13.5369 5.5382 -1.6562 48 1 12.4973 4.5574 -0.5930 49 1 14.5339 7.0457 3.5026 50 1 12.3225 7.4923 1.8555 51 1 11.7044 5.8296 1.6918 52 1 10.9583 8.2390 -0.0297 53 1 9.9053 7.3864 1.1247 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500011556.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:53 Heat of formation + Delta-G solvation = -140.604999 kcal Electronic energy + Delta-G solvation = -30049.392831 eV Core-core repulsion = 25920.333482 eV Total energy + Delta-G solvation = -4129.059349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.50876 -40.70636 -38.79061 -38.24635 -35.92647 -35.02180 -34.57668 -32.76750 -32.04268 -31.60067 -29.50649 -28.36436 -26.97448 -25.91299 -25.52342 -23.99703 -22.73812 -22.50855 -22.15173 -21.58378 -19.78281 -18.53250 -18.27329 -17.96736 -17.59733 -17.36251 -16.83424 -16.56098 -16.40841 -16.17009 -15.82495 -15.53729 -15.47010 -15.22541 -14.88432 -14.80663 -14.51032 -14.31289 -14.07716 -13.82504 -13.44117 -13.21814 -13.07106 -13.05837 -12.97663 -12.87884 -12.82899 -12.59394 -12.53178 -12.28451 -12.09830 -11.88723 -11.83120 -11.81538 -11.78280 -11.47231 -11.08882 -11.04576 -10.86982 -10.67482 -10.58428 -10.48021 -10.17527 -8.64883 -7.86829 -5.31133 1.46354 1.47636 1.54607 1.56168 1.78146 2.51407 2.78037 3.01063 3.26499 3.51885 3.70402 3.71621 3.77524 3.89863 4.04299 4.06486 4.09004 4.11976 4.23014 4.25597 4.29513 4.41140 4.42899 4.50742 4.57955 4.60274 4.65855 4.68154 4.72019 4.77203 4.81370 4.85564 4.88664 4.95236 5.01257 5.06033 5.17167 5.18930 5.23869 5.31094 5.33290 5.36359 5.37130 5.39940 5.53868 5.66347 5.79448 5.92016 6.10164 6.40342 6.52993 7.16897 7.19784 7.89071 8.39535 9.18809 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.031015 B = 0.001726 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.573819 B =16221.916102 C =16526.870390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.056 3.944 4 O -0.403 6.403 5 C 0.048 3.952 6 C 0.506 3.494 7 O -0.579 6.579 8 N -0.709 5.709 9 C 0.134 3.866 10 C 0.078 3.922 11 H 0.091 0.909 12 C -0.135 4.135 13 C -0.076 4.076 14 C 0.063 3.937 15 O -0.379 6.379 16 C -0.107 4.107 17 C 0.141 3.859 18 N -0.608 5.608 19 C -0.263 4.263 20 H 0.063 0.937 21 C -0.048 4.048 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.271 1.271 27 C 0.177 3.823 28 C -0.114 4.114 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.419 0.581 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.047 0.953 48 H 0.014 0.986 49 H 0.249 0.751 50 H 0.050 0.950 51 H 0.003 0.997 52 H 0.053 0.947 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.043 -3.437 -6.498 28.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C -0.020 4.020 4 O -0.323 6.323 5 C -0.031 4.031 6 C 0.293 3.707 7 O -0.458 6.458 8 N -0.363 5.363 9 C 0.010 3.990 10 C 0.021 3.979 11 H 0.108 0.892 12 C -0.173 4.173 13 C -0.076 4.076 14 C -0.013 4.013 15 O -0.299 6.299 16 C -0.146 4.146 17 C 0.015 3.985 18 N -0.332 5.332 19 C -0.393 4.393 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.579 5.579 23 Si 0.792 3.208 24 H -0.212 1.212 25 H -0.223 1.223 26 H -0.195 1.195 27 C 0.052 3.948 28 C -0.153 4.153 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.257 0.743 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.032 0.968 49 H 0.058 0.942 50 H 0.068 0.932 51 H 0.021 0.979 52 H 0.072 0.928 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.684 -4.413 -6.498 27.817 hybrid contribution 1.343 1.013 0.639 1.800 sum -25.341 -3.400 -5.858 26.231 Atomic orbital electron populations 1.21666 0.92883 1.02837 1.02759 1.21491 0.97104 0.95378 1.02524 1.22828 0.78773 0.98620 1.01809 1.87967 1.21627 1.26878 1.95806 1.22306 0.88683 0.86669 1.05426 1.20975 0.90348 0.83890 0.75461 1.90720 1.75882 1.28630 1.50598 1.45675 1.06431 1.09373 1.74783 1.21310 0.79639 0.95571 1.02513 1.23282 0.93701 0.91837 0.89115 0.89171 1.23124 0.94464 0.97557 1.02185 1.21300 0.95535 0.95025 0.95759 1.23286 0.85983 0.90697 1.01376 1.88867 1.49909 1.48061 1.43025 1.21849 0.94704 1.01260 0.96810 1.21064 0.95938 0.91952 0.89529 1.44281 1.08577 1.53359 1.26944 1.19513 0.93860 1.34108 0.91828 0.91899 1.25721 1.00887 1.02060 0.95696 1.70171 1.44899 1.45399 0.97460 0.85328 0.79413 0.79121 0.76957 1.21153 1.22300 1.19544 1.20645 0.86651 0.96949 0.90591 1.21962 0.98104 0.97905 0.97354 0.91704 0.91707 0.91659 0.92194 0.92190 0.91507 0.91474 0.87319 0.87115 0.74343 0.90383 0.91963 0.90794 0.90607 0.91153 0.88885 0.90501 0.92219 0.93394 0.96760 0.94173 0.93203 0.97904 0.92803 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.91 71.98 0.71 -0.43 16 2 C -0.13 -1.66 6.30 30.59 0.19 -1.47 16 3 C 0.06 0.71 5.94 71.98 0.43 1.14 16 4 O -0.40 -8.49 9.88 -129.94 -1.28 -9.77 16 5 C 0.05 0.72 6.42 71.24 0.46 1.17 16 6 C 0.51 11.74 7.91 87.66 0.69 12.44 16 7 O -0.58 -19.98 16.50 16.01 0.26 -19.72 16 8 N -0.71 -13.29 5.51 -463.05 -2.55 -15.85 16 9 C 0.13 3.04 5.43 86.38 0.47 3.50 16 10 C 0.08 1.73 3.39 31.31 0.11 1.84 16 11 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 12 C -0.14 -3.74 4.55 31.76 0.14 -3.60 16 13 C -0.08 -2.16 0.63 -51.91 -0.03 -2.20 16 14 C 0.06 1.44 7.04 72.18 0.51 1.95 16 15 O -0.38 -8.69 11.20 -148.98 -1.67 -10.36 16 16 C -0.11 -3.34 4.54 30.50 0.14 -3.20 16 17 C 0.14 5.66 6.21 86.40 0.54 6.19 16 18 N -0.61 -29.68 2.98 -698.67 -2.09 -31.77 16 19 C -0.26 -14.32 9.58 84.03 0.80 -13.52 16 20 H 0.06 3.37 7.89 -2.91 -0.02 3.35 16 21 C -0.05 -2.66 4.90 84.86 0.42 -2.25 16 22 N -0.93 -54.58 11.19 21.65 0.24 -54.34 16 23 Si 0.96 44.59 29.59 68.60 2.03 46.62 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.18 8.11 5.01 86.40 0.43 8.54 16 28 C -0.11 -3.87 4.67 30.51 0.14 -3.73 16 29 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.42 5.24 8.47 -92.71 -0.79 4.46 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 2.35 6.03 -2.38 -0.01 2.34 16 42 H 0.08 2.13 7.51 -2.38 -0.02 2.11 16 43 H 0.07 1.47 7.68 -2.39 -0.02 1.46 16 44 H 0.09 1.97 7.68 -2.39 -0.02 1.95 16 45 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.05 1.93 7.93 -2.38 -0.02 1.91 16 48 H 0.01 0.59 7.36 -2.39 -0.02 0.57 16 49 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 50 H 0.05 2.65 6.02 -2.39 -0.01 2.63 16 51 H 0.00 0.15 6.45 -2.38 -0.02 0.13 16 52 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 53 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -73.26 412.17 1.19 -72.07 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.10 Total: 16.73 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 6.15 Total: 6.38 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -4.39 Total: -101.95 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -2.69 Total: -39.85 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -73.26 1.19 -72.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500011556.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.534 kcal (2) G-P(sol) polarization free energy of solvation -73.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds