Wall clock time and date at job start Sat Apr 11 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46986 * 2 1 4 4 O 1.42894 * 109.46983 * 120.00347 * 2 1 3 5 5 C 1.42898 * 114.00044 * 149.99997 * 4 2 1 6 6 C 1.50699 * 109.47309 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99983 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00000 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99743 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46984 * 180.02562 * 9 8 6 11 11 H 1.08998 * 110.41895 * 57.69945 * 10 9 8 12 12 C 1.54607 * 110.36984 * 180.02562 * 10 9 8 13 13 C 1.53991 * 103.88325 * 142.71238 * 12 10 9 14 14 C 1.53963 * 104.58171 * 359.87189 * 13 12 10 15 15 O 1.44472 * 110.36637 * 295.40584 * 10 9 8 16 16 C 1.52409 * 110.26549 * 118.41390 * 13 12 10 17 17 C 1.53296 * 109.41965 * 62.65426 * 16 13 12 18 18 N 1.46928 * 108.72452 * 53.67110 * 17 16 13 19 19 C 1.36940 * 120.58180 * 125.82422 * 18 17 16 20 20 H 1.08005 * 120.00067 * 331.90976 * 19 18 17 21 21 C 1.38806 * 119.99902 * 151.90513 * 19 18 17 22 22 N 1.31628 * 120.00288 * 335.53233 * 21 19 18 23 23 Si 1.86806 * 120.00053 * 155.53100 * 21 19 18 24 24 H 1.48500 * 109.47206 * 180.02562 * 23 21 19 25 25 H 1.48498 * 109.47019 * 300.00020 * 23 21 19 26 26 H 1.48496 * 109.46954 * 60.00060 * 23 21 19 27 27 C 1.46932 * 118.83473 * 306.10003 * 18 17 16 28 28 C 1.52405 * 110.25216 * 241.34752 * 13 12 10 29 29 H 1.09001 * 109.46682 * 299.99994 * 1 2 3 30 30 H 1.09002 * 109.47329 * 59.99204 * 1 2 3 31 31 H 1.08998 * 109.46990 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46682 * 240.00005 * 2 1 3 33 33 H 1.09002 * 109.46670 * 60.00559 * 3 2 1 34 34 H 1.08998 * 109.46718 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47370 * 299.99985 * 3 2 1 36 36 H 1.09000 * 109.47078 * 59.99662 * 5 4 2 37 37 H 1.09000 * 109.47061 * 299.99960 * 5 4 2 38 38 H 0.96999 * 119.99984 * 359.97438 * 8 6 5 39 39 H 1.09000 * 109.47126 * 60.00365 * 9 8 6 40 40 H 1.08991 * 109.47468 * 300.00107 * 9 8 6 41 41 H 1.08994 * 110.54374 * 24.11309 * 12 10 9 42 42 H 1.08999 * 110.66352 * 261.37464 * 12 10 9 43 43 H 1.09002 * 110.39639 * 95.17318 * 14 13 12 44 44 H 1.08998 * 110.39306 * 217.56191 * 14 13 12 45 45 H 1.08999 * 109.48385 * 302.66920 * 16 13 12 46 46 H 1.09005 * 109.48122 * 182.63444 * 16 13 12 47 47 H 1.09000 * 109.59135 * 293.90136 * 17 16 13 48 48 H 1.08995 * 109.71610 * 173.52069 * 17 16 13 49 49 H 0.96996 * 119.99496 * 354.24350 * 22 21 19 50 50 H 1.09004 * 109.59508 * 173.67947 * 27 18 17 51 51 H 1.08998 * 109.59430 * 294.14209 * 27 18 17 52 52 H 1.09001 * 109.47781 * 57.34048 * 28 13 12 53 53 H 1.09007 * 109.48365 * 177.36688 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9885 6 6 3.6699 -1.9979 2.2748 7 8 2.9501 -1.9271 3.2484 8 7 4.8309 -2.6790 2.3432 9 6 5.2238 -3.3331 3.5938 10 6 6.5724 -4.0301 3.4030 11 1 7.3296 -3.3130 3.0858 12 6 7.0071 -4.7288 4.7119 13 6 7.6781 -6.0289 4.2315 14 6 7.5730 -5.9750 2.6964 15 8 6.4546 -5.0973 2.4363 16 6 9.1403 -6.0579 4.6602 17 6 9.2229 -6.0520 6.1909 18 7 8.4015 -7.1533 6.7118 19 6 8.9388 -8.0801 7.5648 20 1 9.9939 -8.3065 7.5211 21 6 8.1273 -8.7285 8.4856 22 7 7.0085 -8.1645 8.8889 23 14 8.6231 -10.4015 9.1524 24 1 7.5945 -10.8763 10.1125 25 1 8.7359 -11.3679 8.0305 26 1 9.9326 -10.2906 9.8438 27 6 6.9952 -7.2461 6.2965 28 6 6.9266 -7.2405 4.7699 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9562 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 4.0199 -0.5874 0.7124 37 1 3.1809 -2.0707 0.1985 38 1 5.4064 -2.7360 1.5644 39 1 4.4697 -4.0698 3.8710 40 1 5.3096 -2.5864 4.3831 41 1 6.1393 -4.9528 5.3322 42 1 7.7185 -4.1109 5.2598 43 1 8.4867 -5.5637 2.2673 44 1 7.3774 -6.9689 2.2940 45 1 9.6525 -5.1805 4.2652 46 1 9.6146 -6.9602 4.2741 47 1 8.8472 -5.1031 6.5736 48 1 10.2581 -6.1883 6.5038 49 1 6.7919 -7.2616 8.6081 50 1 6.5620 -8.1712 6.6771 51 1 6.4415 -6.3926 6.6875 52 1 5.8852 -7.1932 4.4517 53 1 7.3834 -8.1523 4.3849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716800232.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:10 Heat of formation + Delta-G solvation = -142.028143 kcal Electronic energy + Delta-G solvation = -30430.134823 eV Core-core repulsion = 26301.013762 eV Total energy + Delta-G solvation = -4129.121061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.59506 -40.76970 -39.05188 -38.46743 -36.00911 -35.22012 -33.74067 -32.68694 -32.08072 -31.70053 -29.20120 -28.23808 -28.04472 -26.28808 -25.51030 -24.06223 -22.70593 -22.38429 -22.24377 -21.70750 -19.97017 -19.06043 -18.37287 -18.09706 -17.56780 -16.95910 -16.74006 -16.54466 -16.26366 -16.14725 -15.78698 -15.49848 -15.39217 -15.31749 -15.17599 -14.75020 -14.56496 -14.29173 -13.99174 -13.74170 -13.48650 -13.43239 -13.28116 -13.18409 -13.06697 -12.89138 -12.85863 -12.50517 -12.36139 -12.30099 -12.24106 -12.04731 -11.92678 -11.67912 -11.65000 -11.62234 -11.21652 -11.08504 -10.89780 -10.65577 -10.65044 -10.46285 -10.21005 -8.91030 -8.24013 -5.40301 1.52209 1.56400 1.64002 1.76650 1.82611 2.65170 2.77933 3.00937 3.20823 3.45401 3.55088 3.65835 3.72442 3.82558 3.96690 4.01667 4.05648 4.10123 4.16310 4.19692 4.28139 4.31238 4.34278 4.36365 4.50435 4.54570 4.62866 4.66269 4.74188 4.75073 4.78319 4.81179 4.82341 4.91242 4.92705 4.93825 4.97076 5.09621 5.17625 5.22755 5.24449 5.25519 5.28715 5.31014 5.33088 5.52577 5.82873 5.84693 6.15357 6.38930 6.51801 7.07482 7.18360 7.78938 8.23950 9.00021 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.001908 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.012862 B =14674.055867 C =15239.964380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.071 3.929 3 C -0.174 4.174 4 O -0.397 6.397 5 C 0.048 3.952 6 C 0.505 3.495 7 O -0.580 6.580 8 N -0.707 5.707 9 C 0.131 3.869 10 C 0.080 3.920 11 H 0.106 0.894 12 C -0.137 4.137 13 C -0.076 4.076 14 C 0.062 3.938 15 O -0.380 6.380 16 C -0.107 4.107 17 C 0.141 3.859 18 N -0.616 5.616 19 C -0.353 4.353 20 H 0.051 0.949 21 C -0.079 4.079 22 N -0.944 5.944 23 Si 1.113 2.887 24 H -0.294 1.294 25 H -0.280 1.280 26 H -0.274 1.274 27 C 0.160 3.840 28 C -0.109 4.109 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.420 0.580 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.058 0.942 47 H 0.018 0.982 48 H 0.048 0.952 49 H 0.253 0.747 50 H 0.036 0.964 51 H 0.003 0.997 52 H 0.059 0.941 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 16.564 -25.161 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.316 6.316 5 C -0.031 4.031 6 C 0.292 3.708 7 O -0.459 6.459 8 N -0.362 5.362 9 C 0.007 3.993 10 C 0.022 3.978 11 H 0.124 0.876 12 C -0.175 4.175 13 C -0.076 4.076 14 C -0.014 4.014 15 O -0.299 6.299 16 C -0.145 4.145 17 C 0.016 3.984 18 N -0.340 5.340 19 C -0.483 4.483 20 H 0.069 0.931 21 C -0.275 4.275 22 N -0.587 5.587 23 Si 0.938 3.062 24 H -0.221 1.221 25 H -0.206 1.206 26 H -0.200 1.200 27 C 0.034 3.966 28 C -0.148 4.148 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.258 0.742 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.076 0.924 47 H 0.036 0.964 48 H 0.066 0.934 49 H 0.063 0.937 50 H 0.054 0.946 51 H 0.021 0.979 52 H 0.078 0.922 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.801 15.339 -23.486 28.307 hybrid contribution 0.737 0.985 -0.409 1.297 sum -3.063 16.324 -23.894 29.100 Atomic orbital electron populations 1.21904 0.93356 1.02561 1.03051 1.22425 0.95486 0.93060 0.87568 1.22304 1.01866 0.95998 1.02952 1.88044 1.35704 1.70385 1.37476 1.22344 0.88422 0.98323 0.93993 1.21038 0.80764 0.78534 0.90455 1.90731 1.53410 1.61857 1.39944 1.45653 1.22051 1.53048 1.15423 1.21339 0.95108 0.95897 0.86989 1.23205 0.95964 0.90231 0.88424 0.87627 1.22957 1.00863 0.96228 0.97491 1.21301 0.95900 0.94419 0.96005 1.23525 0.90035 0.95119 0.92720 1.89105 1.48680 1.37127 1.55019 1.21816 0.94481 1.02297 0.95939 1.21120 0.94382 0.89446 0.93476 1.44308 1.08172 1.28824 1.52743 1.20229 0.95795 1.18713 1.13584 0.93127 1.27179 0.96874 1.08191 0.95222 1.70908 1.28528 1.15411 1.43819 0.82879 0.75357 0.72225 0.75754 1.22056 1.20629 1.20002 1.20672 0.85435 0.97582 0.92887 1.21765 0.99277 0.97661 0.96133 0.93148 0.88722 0.92661 0.89648 0.93256 0.91862 0.89530 0.87163 0.87399 0.74226 0.93118 0.90221 0.92466 0.89469 0.89489 0.88954 0.88994 0.92369 0.96362 0.93357 0.93729 0.94574 0.97913 0.92216 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.56 71.98 0.69 -1.20 16 2 C 0.07 0.91 3.34 30.60 0.10 1.01 16 3 C -0.17 -1.78 9.53 71.98 0.69 -1.09 16 4 O -0.40 -8.36 9.52 -129.94 -1.24 -9.60 16 5 C 0.05 0.72 6.23 71.24 0.44 1.16 16 6 C 0.51 11.89 7.91 87.66 0.69 12.58 16 7 O -0.58 -20.63 16.50 16.00 0.26 -20.36 16 8 N -0.71 -13.14 5.52 -463.06 -2.56 -15.69 16 9 C 0.13 3.02 5.29 86.38 0.46 3.48 16 10 C 0.08 1.63 3.34 31.14 0.10 1.73 16 11 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 12 C -0.14 -3.68 4.97 31.48 0.16 -3.52 16 13 C -0.08 -2.15 0.68 -51.91 -0.04 -2.18 16 14 C 0.06 1.36 6.72 72.31 0.49 1.85 16 15 O -0.38 -8.64 11.31 -148.98 -1.68 -10.32 16 16 C -0.11 -3.10 4.64 30.50 0.14 -2.96 16 17 C 0.14 5.54 6.21 86.40 0.54 6.07 16 18 N -0.62 -30.54 2.84 -699.60 -1.99 -32.53 16 19 C -0.35 -19.85 9.48 84.03 0.80 -19.05 16 20 H 0.05 2.83 7.94 -2.91 -0.02 2.81 16 21 C -0.08 -4.53 4.69 84.86 0.40 -4.14 16 22 N -0.94 -58.84 12.41 21.65 0.27 -58.57 16 23 Si 1.11 51.63 29.98 68.60 2.06 53.69 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 C 0.16 7.61 4.35 86.24 0.38 7.98 16 28 C -0.11 -4.01 4.61 30.34 0.14 -3.87 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.66 7.79 -2.39 -0.02 0.64 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.55 7.87 -2.39 -0.02 0.54 16 35 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.11 0.91 7.87 -2.39 -0.02 0.89 16 37 H 0.11 0.99 8.08 -2.39 -0.02 0.97 16 38 H 0.42 4.83 8.47 -92.71 -0.79 4.05 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.06 1.84 6.33 -2.39 -0.02 1.83 16 42 H 0.09 2.24 6.58 -2.39 -0.02 2.23 16 43 H 0.09 1.46 7.83 -2.39 -0.02 1.45 16 44 H 0.09 2.02 7.85 -2.39 -0.02 2.01 16 45 H 0.09 2.01 8.12 -2.39 -0.02 1.99 16 46 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 47 H 0.02 0.72 6.85 -2.39 -0.02 0.70 16 48 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 49 H 0.25 16.08 6.71 -92.71 -0.62 15.46 16 50 H 0.04 2.00 6.30 -2.38 -0.02 1.98 16 51 H 0.00 0.15 6.59 -2.39 -0.02 0.13 16 52 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 53 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -79.37 409.63 1.54 -77.83 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.25 Total: 17.68 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 6.17 Total: -2.12 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -4.28 Total: -106.79 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -2.66 Total: -40.29 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.06 Total: 53.69 kcal Total: -79.37 1.54 -77.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716800232.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.201 kcal (2) G-P(sol) polarization free energy of solvation -79.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds