Wall clock time and date at job start Sat Apr 11 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 O 1.42900 * 109.47616 * 179.97438 * 3 2 1 5 5 C 1.42898 * 114.00172 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47133 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99990 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99963 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.56691 * 359.71642 * 8 6 5 10 10 C 1.52862 * 108.94944 * 234.11270 * 9 8 6 11 11 C 1.52407 * 109.45577 * 306.52965 * 10 9 8 12 12 C 1.53978 * 110.24654 * 297.32812 * 11 10 9 13 13 O 1.44545 * 104.69424 * 265.10728 * 12 11 10 14 14 C 1.44474 * 105.35974 * 319.97396 * 13 12 11 15 15 H 1.09006 * 110.36774 * 281.34212 * 14 13 12 16 16 C 1.52996 * 110.37208 * 159.12224 * 14 13 12 17 17 N 1.46500 * 109.47335 * 66.45114 * 16 14 13 18 18 C 1.36935 * 120.00291 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99685 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00073 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00099 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00153 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47023 * 59.99962 * 22 20 18 24 24 H 1.48501 * 109.47077 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46873 * 299.99829 * 22 20 18 26 26 C 1.53977 * 110.28012 * 182.34733 * 11 10 9 27 27 C 1.52415 * 111.00578 * 59.80391 * 11 10 9 28 28 C 1.46922 * 120.56512 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 36 36 H 1.09000 * 109.47170 * 299.99902 * 5 4 3 37 37 H 1.08993 * 109.47210 * 59.99794 * 5 4 3 38 38 H 1.09000 * 109.59284 * 353.92975 * 9 8 6 39 39 H 1.09001 * 109.59430 * 114.38860 * 9 8 6 40 40 H 1.09004 * 109.55112 * 186.46965 * 10 9 8 41 41 H 1.09004 * 109.34481 * 66.45875 * 10 9 8 42 42 H 1.09003 * 110.39157 * 23.90823 * 12 11 10 43 43 H 1.08998 * 110.39628 * 146.29936 * 12 11 10 44 44 H 1.08991 * 109.47349 * 186.45404 * 16 14 13 45 45 H 1.09006 * 109.46661 * 306.45405 * 16 14 13 46 46 H 0.97006 * 119.99986 * 0.02562 * 17 16 14 47 47 H 0.97000 * 119.99855 * 180.02562 * 21 20 18 48 48 H 1.09005 * 110.55071 * 237.23586 * 26 11 10 49 49 H 1.09003 * 110.54628 * 0.03841 * 26 11 10 50 50 H 1.09004 * 109.48058 * 180.10364 * 27 11 10 51 51 H 1.08995 * 109.49857 * 60.06414 * 27 11 10 52 52 H 1.08992 * 109.59850 * 245.61758 * 28 8 6 53 53 H 1.09005 * 109.59317 * 6.07955 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7480 0.0012 6 6 5.5525 2.6290 0.0012 7 8 6.0741 1.5341 0.0012 8 7 6.3164 3.7394 0.0023 9 6 5.6977 5.0720 -0.0028 10 6 6.2622 5.8770 -1.1733 11 6 7.7847 5.8739 -1.1042 12 6 8.2608 6.5660 0.1863 13 8 8.5204 7.9330 -0.2052 14 6 9.1452 7.8468 -1.5050 15 1 10.1966 7.5776 -1.4034 16 6 9.0063 9.1749 -2.2518 17 7 9.7829 10.2073 -1.5609 18 6 9.8090 11.4862 -2.0493 19 1 9.2573 11.7338 -2.9442 20 6 10.5453 12.4642 -1.3950 21 7 11.2188 12.1621 -0.3053 22 14 10.5815 14.2088 -2.0618 23 1 9.2016 14.7569 -2.0893 24 1 11.4335 15.0551 -1.1881 25 1 11.1387 14.2012 -3.4383 26 6 8.3723 6.7288 -2.2420 27 6 8.3319 4.4531 -1.1738 28 6 7.7821 3.6379 0.0028 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.7290 3.2892 -0.8887 37 1 3.7282 3.2886 0.8912 38 1 4.6181 4.9733 -0.1157 39 1 5.9245 5.5839 0.9324 40 1 5.8978 6.9029 -1.1199 41 1 5.9399 5.4247 -2.1113 42 1 7.4806 6.5302 0.9466 43 1 9.1730 6.0966 0.5547 44 1 9.3789 9.0601 -3.2695 45 1 7.9567 9.4678 -2.2799 46 1 10.2787 9.9848 -0.7573 47 1 11.7330 12.8456 0.1522 48 1 9.0504 6.1355 -2.8554 49 1 7.5752 7.1534 -2.8524 50 1 9.4203 4.4797 -1.1205 51 1 8.0249 3.9906 -2.1118 52 1 8.1758 4.0349 0.9384 53 1 8.0763 2.5940 -0.1065 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717634504.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:16 Heat of formation + Delta-G solvation = -144.358659 kcal Electronic energy + Delta-G solvation = -30165.317253 eV Core-core repulsion = 26036.095133 eV Total energy + Delta-G solvation = -4129.222120 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.89482 -40.58664 -38.86486 -37.85397 -36.35204 -34.66552 -34.42773 -33.49555 -32.43566 -31.18355 -29.59177 -28.02808 -26.73612 -26.50400 -25.14518 -24.34115 -23.74103 -22.48405 -22.04966 -21.15316 -19.43354 -19.14187 -18.46938 -17.57827 -17.49008 -17.16801 -16.93581 -16.61248 -16.41631 -16.32620 -16.10673 -15.46177 -15.20941 -15.19613 -15.05282 -14.83532 -14.42852 -14.25382 -14.05550 -13.92279 -13.68052 -13.39103 -13.07382 -13.03639 -13.02528 -12.94696 -12.83639 -12.71494 -12.44879 -12.26955 -12.20141 -12.07579 -11.92202 -11.83211 -11.79232 -11.52809 -11.38652 -11.26597 -10.94854 -10.78027 -10.68817 -10.58139 -9.70477 -8.99310 -7.92997 -5.22625 1.47607 1.49884 1.51620 1.57757 1.67293 2.57054 2.79761 3.00224 3.40297 3.43088 3.50949 3.59223 3.79860 3.89642 4.03244 4.03433 4.06808 4.09937 4.16735 4.21132 4.23912 4.27273 4.35059 4.39808 4.41864 4.51949 4.54100 4.57861 4.63933 4.64840 4.68733 4.76205 4.83011 4.84913 4.92082 4.93346 5.00855 5.04130 5.10683 5.16503 5.21860 5.23272 5.24245 5.31062 5.35563 5.48425 5.50598 6.04863 6.08303 6.28073 6.33927 7.08721 7.34055 8.10309 8.33778 9.30518 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026193 B = 0.001761 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.745292 B =15899.644931 C =16459.589606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.055 3.945 4 O -0.402 6.402 5 C 0.045 3.955 6 C 0.510 3.490 7 O -0.576 6.576 8 N -0.603 5.603 9 C 0.100 3.900 10 C -0.116 4.116 11 C -0.081 4.081 12 C 0.044 3.956 13 O -0.390 6.390 14 C 0.074 3.926 15 H 0.056 0.944 16 C 0.157 3.843 17 N -0.744 5.744 18 C -0.250 4.250 19 H 0.078 0.922 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.977 3.023 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.275 1.275 26 C -0.127 4.127 27 C -0.110 4.110 28 C 0.110 3.890 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.040 0.960 45 H 0.023 0.977 46 H 0.373 0.627 47 H 0.251 0.749 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.084 0.916 51 H 0.073 0.927 52 H 0.078 0.922 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.690 -23.163 -0.344 31.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C -0.020 4.020 4 O -0.321 6.321 5 C -0.034 4.034 6 C 0.299 3.701 7 O -0.455 6.455 8 N -0.338 5.338 9 C -0.021 4.021 10 C -0.154 4.154 11 C -0.081 4.081 12 C -0.033 4.033 13 O -0.309 6.309 14 C 0.017 3.983 15 H 0.074 0.926 16 C 0.030 3.970 17 N -0.386 5.386 18 C -0.382 4.382 19 H 0.095 0.905 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.806 3.194 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.201 1.201 26 C -0.165 4.165 27 C -0.148 4.148 28 C -0.012 4.012 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.120 0.880 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.041 0.959 46 H 0.205 0.795 47 H 0.059 0.941 48 H 0.110 0.890 49 H 0.104 0.896 50 H 0.103 0.897 51 H 0.092 0.908 52 H 0.097 0.903 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.420 -23.587 -0.349 31.200 hybrid contribution 0.740 1.075 0.083 1.308 sum -19.680 -22.512 -0.266 29.903 Atomic orbital electron populations 1.21671 0.92988 1.02840 1.02727 1.21480 0.97014 0.95314 1.02565 1.22827 0.78801 0.98661 1.01752 1.87963 1.21570 1.26814 1.95767 1.22388 0.89327 0.86660 1.04990 1.20853 0.90101 0.83619 0.75490 1.90697 1.75589 1.28181 1.51076 1.48124 1.06775 1.06238 1.72619 1.22039 0.99311 0.81125 0.99652 1.21780 0.92961 1.01331 0.99378 1.21409 0.96940 0.95120 0.94649 1.23743 1.00540 0.81897 0.97093 1.89295 1.80512 1.26379 1.34734 1.23163 0.96325 0.95271 0.83584 0.92620 1.20918 0.94557 0.87072 0.94416 1.42514 1.58212 1.06508 1.31403 1.19652 1.23831 0.87362 1.07315 0.90455 1.25628 1.00530 1.02460 0.98287 1.69845 1.36766 1.34165 1.21313 0.85161 0.77474 0.79440 0.77361 1.20321 1.22139 1.20144 1.22948 1.00405 0.95386 0.97795 1.21838 1.01121 0.93110 0.98780 1.21657 0.79009 1.01427 0.99138 0.91760 0.91632 0.91768 0.92116 0.92120 0.91574 0.91580 0.87521 0.87516 0.86746 0.89801 0.89732 0.90143 0.88014 0.92302 0.94256 0.95876 0.79521 0.94052 0.88978 0.89605 0.89728 0.90839 0.90347 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.91 71.98 0.71 -0.33 16 2 C -0.13 -1.49 6.30 30.59 0.19 -1.30 16 3 C 0.06 0.64 5.94 71.98 0.43 1.07 16 4 O -0.40 -7.78 9.88 -129.94 -1.28 -9.06 16 5 C 0.05 0.61 4.76 71.24 0.34 0.95 16 6 C 0.51 10.51 7.77 87.66 0.68 11.20 16 7 O -0.58 -17.79 15.90 16.01 0.25 -17.54 16 8 N -0.60 -9.67 2.97 -819.28 -2.43 -12.10 16 9 C 0.10 1.08 6.01 86.25 0.52 1.59 16 10 C -0.12 -1.59 4.67 30.35 0.14 -1.45 16 11 C -0.08 -1.44 0.68 -51.91 -0.04 -1.48 16 12 C 0.04 1.00 5.63 72.31 0.41 1.40 16 13 O -0.39 -13.48 11.33 -148.98 -1.69 -15.17 16 14 C 0.07 2.41 3.33 31.14 0.10 2.51 16 15 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 16 C 0.16 6.35 5.88 86.38 0.51 6.86 16 17 N -0.74 -39.57 5.58 -343.47 -1.92 -41.49 16 18 C -0.25 -14.36 9.99 84.03 0.84 -13.52 16 19 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 21 N -0.97 -61.07 13.06 21.65 0.28 -60.79 16 22 Si 0.98 46.66 29.55 68.60 2.03 48.68 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 C -0.13 -2.77 5.91 31.47 0.19 -2.58 16 27 C -0.11 -1.76 4.56 30.51 0.14 -1.62 16 28 C 0.11 1.89 6.14 86.41 0.53 2.42 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.11 0.83 7.69 -2.39 -0.02 0.81 16 37 H 0.11 0.83 7.94 -2.39 -0.02 0.81 16 38 H 0.11 0.57 5.92 -2.39 -0.01 0.56 16 39 H 0.08 0.86 6.44 -2.39 -0.02 0.85 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.10 1.98 6.00 -2.39 -0.01 1.96 16 43 H 0.06 1.31 7.70 -2.39 -0.02 1.29 16 44 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.37 21.53 7.67 -92.70 -0.71 20.82 16 47 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 48 H 0.09 1.73 7.72 -2.38 -0.02 1.71 16 49 H 0.09 1.78 7.45 -2.39 -0.02 1.76 16 50 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 51 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 52 H 0.08 1.24 7.45 -2.39 -0.02 1.22 16 53 H 0.08 1.65 7.00 -2.38 -0.02 1.63 16 Total: -1.00 -79.78 411.65 1.58 -78.20 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.17 Total: 27.58 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 6.16 Total: 1.69 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -4.07 Total: -114.38 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -2.72 Total: -41.77 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -79.78 1.58 -78.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717634504.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.159 kcal (2) G-P(sol) polarization free energy of solvation -79.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds