Wall clock time and date at job start Sat Apr 11 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.50239 * 2 1 4 4 C 1.53094 * 109.50302 * 120.08342 * 2 1 3 5 5 N 1.47017 * 109.25368 * 176.78487 * 4 2 1 6 6 C 1.46900 * 110.99757 * 177.61202 * 5 4 2 7 7 C 1.52999 * 109.47189 * 170.00092 * 6 5 4 8 8 O 1.42900 * 109.47452 * 64.99579 * 7 6 5 9 9 C 1.42897 * 114.00288 * 180.02562 * 8 7 6 10 10 C 1.53034 * 109.46151 * 270.02683 * 9 8 7 11 11 C 1.53191 * 109.31403 * 178.60152 * 10 9 8 12 12 N 1.46928 * 108.76617 * 54.65677 * 11 10 9 13 13 C 1.34779 * 120.63005 * 126.40643 * 12 11 10 14 14 O 1.21684 * 119.99666 * 174.73422 * 13 12 11 15 15 C 1.46376 * 119.99932 * 354.72972 * 13 12 11 16 16 H 1.07997 * 120.00187 * 5.57224 * 15 13 12 17 17 C 1.40050 * 119.99725 * 185.56659 * 15 13 12 18 18 N 1.30673 * 119.99947 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99831 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46951 * 90.00352 * 19 17 15 21 21 H 1.48497 * 109.47190 * 209.99941 * 19 17 15 22 22 H 1.48500 * 109.47113 * 330.00387 * 19 17 15 23 23 C 1.46924 * 118.73722 * 306.38265 * 12 11 10 24 24 C 1.53046 * 109.45865 * 149.97321 * 9 8 7 25 25 C 1.47013 * 110.75529 * 301.38407 * 5 4 2 26 26 C 1.53102 * 109.25606 * 58.61698 * 25 5 4 27 27 H 1.09002 * 109.50755 * 183.17821 * 26 25 5 28 28 C 1.52997 * 109.50812 * 63.08752 * 26 25 5 29 29 O 1.43013 * 109.50467 * 239.87022 * 2 1 3 30 30 H 1.09004 * 109.47289 * 299.91576 * 1 2 3 31 31 H 1.08997 * 109.47410 * 179.91347 * 1 2 3 32 32 H 1.09002 * 109.47114 * 59.91490 * 1 2 3 33 33 H 1.09000 * 109.50999 * 296.71785 * 4 2 1 34 34 H 1.08994 * 109.50998 * 56.85467 * 4 2 1 35 35 H 1.08997 * 109.47160 * 289.99646 * 6 5 4 36 36 H 1.08999 * 109.47467 * 49.99572 * 6 5 4 37 37 H 1.09003 * 109.47463 * 184.99891 * 7 6 5 38 38 H 1.09002 * 109.47062 * 304.99938 * 7 6 5 39 39 H 1.09003 * 109.46156 * 29.99969 * 9 8 7 40 40 H 1.09003 * 109.50148 * 298.56384 * 10 9 8 41 41 H 1.09004 * 109.49733 * 58.66392 * 10 9 8 42 42 H 1.09006 * 109.59853 * 294.86606 * 11 10 9 43 43 H 1.09002 * 109.70269 * 174.50600 * 11 10 9 44 44 H 0.97002 * 119.99589 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.58834 * 293.82501 * 23 12 11 46 46 H 1.09003 * 109.58573 * 173.39424 * 23 12 11 47 47 H 1.08996 * 109.49622 * 301.33434 * 24 9 8 48 48 H 1.08994 * 109.49600 * 61.43958 * 24 9 8 49 49 H 1.08995 * 109.50928 * 178.55042 * 25 5 4 50 50 H 1.08999 * 109.50731 * 298.64499 * 25 5 4 51 51 H 1.08998 * 109.47171 * 59.99648 * 28 26 25 52 52 H 1.08991 * 109.47579 * 179.97438 * 28 26 25 53 53 H 1.09000 * 109.46910 * 300.00198 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0411 -0.7234 1.2487 5 7 3.5092 -0.7879 1.2048 6 6 4.0445 -1.4259 2.4149 7 6 5.5380 -1.7010 2.2284 8 8 6.2398 -0.4616 2.1123 9 6 7.6501 -0.6068 1.9332 10 6 8.3379 -0.6299 3.3001 11 6 9.8454 -0.8207 3.1055 12 7 10.3409 0.2237 2.1986 13 6 11.3737 1.0117 2.5577 14 8 11.8368 1.8077 1.7624 15 6 11.9382 0.9098 3.9044 16 1 11.5883 0.1433 4.5801 17 6 12.9320 1.8063 4.3167 18 7 13.3550 2.7339 3.4993 19 14 13.6519 1.6768 6.0356 20 1 14.8279 0.7703 6.0126 21 1 14.0738 3.0233 6.4982 22 1 12.6263 1.1338 6.9621 23 6 9.6893 0.3925 0.8926 24 6 8.1835 0.5694 1.1120 25 6 3.9640 -1.4883 -0.0051 26 6 3.4335 -0.7572 -1.2413 27 1 3.7207 -1.3046 -2.1391 28 6 4.0229 0.6537 -1.2925 29 8 2.0075 -0.6767 -1.1659 30 1 -0.3634 0.5125 0.8908 31 1 -0.3634 -1.0276 -0.0016 32 1 -0.3633 0.5152 -0.8892 33 1 1.7272 -0.1786 2.1391 34 1 1.6332 -1.7337 1.2767 35 1 3.9010 -0.7636 3.2686 36 1 3.5213 -2.3655 2.5921 37 1 5.9160 -2.2534 3.0886 38 1 5.6887 -2.2899 1.3236 39 1 7.8553 -1.5394 1.4076 40 1 8.1540 0.3125 3.8160 41 1 7.9408 -1.4537 3.8933 42 1 10.0368 -1.8022 2.6717 43 1 10.3531 -0.7408 4.0668 44 1 14.0436 3.3546 3.7848 45 1 9.8678 -0.4900 0.2784 46 1 10.0921 1.2745 0.3946 47 1 7.6764 0.5994 0.1477 48 1 8.0009 1.5003 1.6488 49 1 5.0535 -1.5019 -0.0300 50 1 3.5872 -2.5111 0.0031 51 1 5.1098 0.5917 -1.3460 52 1 3.6453 1.1735 -2.1729 53 1 3.7340 1.2010 -0.3952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357605349.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:55 Heat of formation + Delta-G solvation = -143.506583 kcal Electronic energy + Delta-G solvation = -31163.333114 eV Core-core repulsion = 27034.147943 eV Total energy + Delta-G solvation = -4129.185171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.09091 -40.47290 -39.02589 -37.32752 -36.27159 -34.66395 -34.32224 -32.81283 -31.94748 -31.43192 -29.79069 -28.39621 -27.88758 -25.71785 -25.07833 -24.10277 -23.90767 -22.18953 -22.10622 -20.54831 -20.39569 -18.55453 -18.07450 -17.71234 -17.55718 -17.18049 -16.53644 -16.26999 -16.07934 -15.98073 -15.88884 -15.53292 -15.41542 -15.29130 -14.81123 -14.47612 -14.22475 -14.07693 -13.91793 -13.57952 -13.36069 -13.29357 -13.25986 -13.07388 -12.90312 -12.82092 -12.76568 -12.70447 -12.59356 -12.44363 -12.27350 -12.14620 -12.07905 -11.96229 -11.83189 -11.53137 -11.40170 -11.19524 -10.93061 -10.51406 -10.31802 -9.76762 -9.25070 -9.11293 -8.28870 -6.83299 1.39692 1.41296 1.56267 2.23725 2.44996 2.64721 2.76297 2.86051 2.90129 3.61056 3.76396 3.83562 3.87244 3.92410 3.97011 4.08142 4.16938 4.20790 4.23435 4.27138 4.29480 4.40142 4.41574 4.44581 4.49590 4.52315 4.60886 4.65417 4.72352 4.74196 4.78946 4.80387 4.85297 4.92956 4.94813 5.00151 5.00740 5.01700 5.05688 5.15307 5.18705 5.26344 5.40248 5.41361 5.41715 5.77797 6.00381 6.01859 6.15240 6.28464 6.40644 6.42658 6.88348 7.42342 8.47157 8.67760 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.002174 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.628524 B =12874.520063 C =13362.030502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 H 0.060 0.940 4 C 0.027 3.973 5 N -0.539 5.539 6 C 0.061 3.939 7 C 0.053 3.947 8 O -0.380 6.380 9 C 0.105 3.895 10 C -0.144 4.144 11 C 0.120 3.880 12 N -0.647 5.647 13 C 0.540 3.460 14 O -0.634 6.634 15 C -0.569 4.569 16 H 0.095 0.905 17 C 0.027 3.973 18 N -0.824 5.824 19 Si 0.995 3.005 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.247 1.247 23 C 0.122 3.878 24 C -0.113 4.113 25 C 0.024 3.976 26 C 0.088 3.912 27 H 0.114 0.886 28 C -0.167 4.167 29 O -0.394 6.394 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.047 0.953 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.273 0.727 45 H 0.067 0.933 46 H 0.051 0.949 47 H 0.089 0.911 48 H 0.041 0.959 49 H 0.091 0.909 50 H 0.041 0.959 51 H 0.064 0.936 52 H 0.056 0.944 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.748 -12.821 -2.450 27.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.024 3.976 3 H 0.078 0.922 4 C -0.101 4.101 5 N -0.265 5.265 6 C -0.067 4.067 7 C -0.023 4.023 8 O -0.300 6.300 9 C 0.047 3.953 10 C -0.182 4.182 11 C -0.003 4.003 12 N -0.384 5.384 13 C 0.346 3.654 14 O -0.522 6.522 15 C -0.605 4.605 16 H 0.113 0.887 17 C -0.188 4.188 18 N -0.453 5.453 19 Si 0.815 3.185 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.170 1.170 23 C -0.001 4.001 24 C -0.151 4.151 25 C -0.104 4.104 26 C 0.031 3.969 27 H 0.132 0.868 28 C -0.225 4.225 29 O -0.314 6.314 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.107 0.893 48 H 0.060 0.940 49 H 0.109 0.891 50 H 0.060 0.940 51 H 0.083 0.917 52 H 0.075 0.925 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.439 -11.672 -3.068 27.256 hybrid contribution 0.691 -0.452 0.678 1.069 sum -23.747 -12.124 -2.391 26.770 Atomic orbital electron populations 1.21743 0.91469 1.03084 1.03411 1.22258 0.95699 0.95576 0.84105 0.92198 1.22823 0.87395 1.00187 0.99648 1.62168 1.08882 1.53287 1.02134 1.22174 0.92875 0.98595 0.93022 1.22827 0.91776 0.86625 1.01120 1.88034 1.18177 1.29981 1.93765 1.21887 0.80694 0.98004 0.94737 1.22344 0.95084 1.02573 0.98232 1.21592 0.93557 0.90148 0.95026 1.48106 1.35166 1.37626 1.17483 1.18674 0.78784 0.79106 0.88790 1.90535 1.64080 1.42378 1.55176 1.21511 1.22712 1.18098 0.98155 0.88700 1.27021 0.95374 0.92981 1.03442 1.70199 1.23414 1.13888 1.37843 0.85054 0.79093 0.78422 0.75969 1.18543 1.20004 1.16970 1.21208 0.91623 1.00953 0.86356 1.21817 0.94373 0.98165 1.00788 1.22834 1.01614 0.95500 0.90439 1.22345 0.80186 0.96541 0.97866 0.86795 1.22179 1.01439 0.96957 1.01898 1.88003 1.21471 1.78269 1.43662 0.89347 0.91889 0.91749 0.88941 0.93939 0.90068 0.91735 0.91601 0.92183 0.90599 0.93407 0.88729 0.91392 0.89854 0.91677 0.91487 0.93019 0.89302 0.93966 0.89113 0.94046 0.91653 0.92495 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.57 71.98 0.69 -0.99 16 2 C 0.08 1.35 3.02 30.63 0.09 1.45 16 3 H 0.06 1.12 6.49 -2.39 -0.02 1.10 16 4 C 0.03 0.43 4.91 86.31 0.42 0.85 16 5 N -0.54 -9.78 4.19 -895.23 -3.75 -13.53 16 6 C 0.06 0.97 5.66 86.30 0.49 1.46 16 7 C 0.05 0.93 5.24 71.98 0.38 1.30 16 8 O -0.38 -9.53 9.93 -148.98 -1.48 -11.00 16 9 C 0.10 2.77 2.57 30.62 0.08 2.85 16 10 C -0.14 -4.16 5.69 30.67 0.17 -3.99 16 11 C 0.12 4.21 6.35 86.36 0.55 4.76 16 12 N -0.65 -29.68 2.97 -823.97 -2.45 -32.13 16 13 C 0.54 31.89 7.61 86.36 0.66 32.55 16 14 O -0.63 -43.45 14.48 -4.30 -0.06 -43.51 16 15 C -0.57 -32.20 8.88 24.83 0.22 -31.98 16 16 H 0.10 4.76 5.64 -2.91 -0.02 4.74 16 17 C 0.03 1.49 5.50 85.30 0.47 1.96 16 18 N -0.82 -51.10 11.84 21.84 0.26 -50.85 16 19 Si 1.00 40.97 29.56 68.60 2.03 43.00 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 21 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 23 C 0.12 4.82 6.42 86.37 0.55 5.38 16 24 C -0.11 -3.64 5.73 30.68 0.18 -3.46 16 25 C 0.02 0.41 4.36 86.32 0.38 0.79 16 26 C 0.09 1.58 3.92 30.63 0.12 1.70 16 27 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 28 C -0.17 -3.24 8.89 71.98 0.64 -2.60 16 29 O -0.39 -7.88 10.28 -148.98 -1.53 -9.42 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 0.63 8.14 -2.39 -0.02 0.62 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 0.81 8.08 -2.39 -0.02 0.79 16 37 H 0.07 0.99 7.84 -2.39 -0.02 0.97 16 38 H 0.06 0.94 5.89 -2.39 -0.01 0.92 16 39 H 0.08 1.70 7.79 -2.39 -0.02 1.68 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.09 2.12 7.84 -2.38 -0.02 2.10 16 42 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.08 3.13 5.30 -2.39 -0.01 3.12 16 44 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 45 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.05 2.41 7.04 -2.39 -0.02 2.39 16 47 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 48 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.09 1.60 5.94 -2.39 -0.01 1.58 16 50 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 52 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.06 1.31 6.12 -2.39 -0.01 1.29 16 Total: -1.00 -78.51 403.30 -0.02 -78.53 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.88 Total: 26.87 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.09 Total: 12.03 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -5.94 Total: -96.51 kcal Atomic # 8 Polarization: -60.86 SS G_CDS: -3.07 Total: -63.93 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -78.51 -0.02 -78.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357605349.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.976 kcal (2) G-P(sol) polarization free energy of solvation -78.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds