Wall clock time and date at job start Sat Apr 11 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34221 * 117.00195 * 2 1 4 4 O 1.20824 * 120.00186 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99855 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.46236 * 60.03331 * 5 3 2 7 7 C 1.53040 * 109.46282 * 300.06894 * 5 3 2 8 8 C 1.53192 * 109.31540 * 178.61225 * 7 5 3 9 9 N 1.46932 * 108.77125 * 54.63546 * 8 7 5 10 10 C 1.34783 * 120.62579 * 126.41491 * 9 8 7 11 11 O 1.21586 * 120.00009 * 354.77033 * 10 9 8 12 12 N 1.34777 * 119.99584 * 174.77584 * 10 9 8 13 13 C 1.46503 * 119.99923 * 184.98409 * 12 10 9 14 14 C 1.52999 * 109.47233 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47098 * 299.99736 * 14 13 12 16 16 C 1.53007 * 109.46784 * 59.99879 * 14 13 12 17 17 C 1.52996 * 109.46858 * 179.97438 * 14 13 12 18 18 C 1.50706 * 109.47126 * 180.02562 * 17 14 13 19 19 H 1.07997 * 119.99907 * 0.02562 * 18 17 14 20 20 C 1.37878 * 120.00359 * 180.02562 * 18 17 14 21 21 N 1.31511 * 119.99782 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00105 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46961 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47262 * 120.00063 * 22 20 18 25 25 H 1.48499 * 109.46855 * 240.00014 * 22 20 18 26 26 C 1.46921 * 118.74229 * 306.39507 * 9 8 7 27 27 C 1.53043 * 109.45878 * 180.02562 * 5 3 2 28 28 H 1.09006 * 109.49855 * 61.43912 * 27 5 3 29 29 C 1.52999 * 109.50167 * 301.34084 * 27 5 3 30 30 H 1.08997 * 109.47153 * 59.99806 * 1 2 3 31 31 H 1.09005 * 109.47249 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47134 * 299.99784 * 1 2 3 33 33 H 1.08999 * 109.49595 * 58.66429 * 7 5 3 34 34 H 1.09000 * 109.50089 * 298.56912 * 7 5 3 35 35 H 1.09003 * 109.59050 * 294.85570 * 8 7 5 36 36 H 1.08998 * 109.59084 * 174.41993 * 8 7 5 37 37 H 0.96997 * 120.00262 * 4.97254 * 12 10 9 38 38 H 1.08999 * 109.47044 * 299.99900 * 13 12 10 39 39 H 1.09003 * 109.47149 * 59.99388 * 13 12 10 40 40 H 1.09000 * 109.46853 * 60.00458 * 15 14 13 41 41 H 1.09007 * 109.46588 * 179.97438 * 15 14 13 42 42 H 1.08990 * 109.47477 * 299.99721 * 15 14 13 43 43 H 1.08999 * 109.46832 * 59.99915 * 16 14 13 44 44 H 1.08996 * 109.46765 * 179.97438 * 16 14 13 45 45 H 1.08992 * 109.46883 * 299.99808 * 16 14 13 46 46 H 1.09001 * 109.47529 * 299.99821 * 17 14 13 47 47 H 1.09000 * 109.47658 * 60.00570 * 17 14 13 48 48 H 0.97001 * 120.00371 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.59085 * 173.39714 * 26 9 8 50 50 H 1.09005 * 109.58662 * 293.81752 * 26 9 8 51 51 H 1.09001 * 109.46664 * 300.16286 * 29 27 5 52 52 H 1.09002 * 109.47038 * 60.15969 * 29 27 5 53 53 H 1.09000 * 109.47005 * 180.16248 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9562 0.7808 -0.8895 7 6 4.1129 0.5796 1.2497 8 6 5.6438 0.6313 1.2295 9 7 6.0677 2.0305 1.0832 10 6 6.9341 2.5804 1.9571 11 8 7.2989 1.9492 2.9302 12 7 7.3959 3.8299 1.7523 13 6 8.4194 4.3872 2.6401 14 6 8.7651 5.8084 2.1910 15 6 9.2973 5.7748 0.7570 16 6 7.5096 6.6810 2.2488 17 6 9.8335 6.3906 3.1185 18 6 10.1736 7.7907 2.6766 19 1 9.6770 8.2222 1.8201 20 6 11.1187 8.5207 3.3657 21 7 11.7238 7.9951 4.4083 22 14 11.5396 10.2564 2.8183 23 1 10.7256 10.6112 1.6280 24 1 11.2468 11.2078 3.9203 25 1 12.9816 10.3298 2.4710 26 6 5.5297 2.8187 -0.0338 27 6 4.0000 2.7424 0.0011 28 1 3.6317 3.2303 0.9036 29 6 3.4259 3.4451 -1.2307 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.7841 -0.4596 1.2610 34 1 3.7434 1.0882 2.1402 35 1 6.0181 0.0465 0.3893 36 1 6.0355 0.2265 2.1626 37 1 7.0508 4.3601 1.0171 38 1 8.0404 4.4107 3.6618 39 1 9.3139 3.7657 2.5986 40 1 8.5357 5.3602 0.0965 41 1 9.5431 6.7874 0.4369 42 1 10.1916 5.1532 0.7157 43 1 7.1305 6.7049 3.2705 44 1 7.7560 7.6936 1.9293 45 1 6.7482 6.2664 1.5883 46 1 9.4540 6.4146 4.1400 47 1 10.7280 5.7691 3.0777 48 1 12.3889 8.5085 4.8929 49 1 5.8461 3.8570 0.0657 50 1 5.8947 2.4122 -0.9771 51 1 3.7936 2.9556 -2.1326 52 1 2.3375 3.3905 -1.2058 53 1 3.7374 4.4896 -1.2314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358740268.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:02 Heat of formation + Delta-G solvation = -148.361179 kcal Electronic energy + Delta-G solvation = -31022.100999 eV Core-core repulsion = 26892.705317 eV Total energy + Delta-G solvation = -4129.395682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06370 -41.25571 -39.26921 -38.41290 -37.43504 -35.35753 -34.57327 -33.99933 -32.99311 -29.39502 -28.96318 -27.95316 -27.80754 -27.56465 -26.61578 -24.85092 -23.21331 -22.83465 -21.39869 -20.71903 -19.98259 -18.90399 -18.63600 -18.34481 -17.74519 -17.46424 -17.11658 -16.66144 -16.48614 -15.70638 -15.59920 -15.40665 -15.25892 -15.10520 -14.64965 -14.56976 -14.46943 -14.34341 -13.96215 -13.93172 -13.67500 -13.38781 -13.24988 -12.99914 -12.89510 -12.84789 -12.74181 -12.67292 -12.57803 -12.33598 -12.21487 -12.04877 -11.93251 -11.83201 -11.68935 -11.61304 -11.52748 -11.29850 -11.12101 -10.95280 -10.82281 -10.50885 -10.19147 -9.48717 -8.12646 -6.20256 1.13926 1.42697 1.43679 1.55378 1.62080 1.75527 2.14027 2.45200 2.94498 3.21852 3.41310 3.64975 3.70395 3.88815 3.98756 4.10755 4.14323 4.23586 4.26957 4.29347 4.31729 4.33414 4.49585 4.58384 4.63916 4.70516 4.71460 4.73136 4.74975 4.78978 4.83352 4.91634 4.97380 5.03975 5.09502 5.12465 5.13951 5.27744 5.30675 5.40674 5.49623 5.51540 5.52545 5.55597 5.60495 5.62635 5.82161 5.91064 5.92231 6.32349 6.72762 6.94083 6.97969 7.47293 7.56464 9.00054 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.002152 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.596829 B =13007.753432 C =13690.525496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.466 3.534 4 O -0.528 6.528 5 C -0.070 4.070 6 H 0.142 0.858 7 C -0.117 4.117 8 C 0.129 3.871 9 N -0.628 5.628 10 C 0.700 3.300 11 O -0.637 6.637 12 N -0.726 5.726 13 C 0.161 3.839 14 C -0.064 4.064 15 C -0.120 4.120 16 C -0.121 4.121 17 C 0.040 3.960 18 C -0.511 4.511 19 H 0.074 0.926 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.959 3.041 23 H -0.256 1.256 24 H -0.286 1.286 25 H -0.285 1.285 26 C 0.116 3.884 27 C -0.085 4.085 28 H 0.059 0.941 29 C -0.157 4.157 30 H 0.063 0.937 31 H 0.130 0.870 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.407 0.593 38 H 0.040 0.960 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.034 0.966 44 H 0.057 0.943 45 H 0.066 0.934 46 H -0.015 1.015 47 H -0.012 1.012 48 H 0.259 0.741 49 H 0.087 0.913 50 H 0.104 0.896 51 H 0.074 0.926 52 H 0.065 0.935 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.033 -17.323 -16.578 32.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.310 3.690 4 O -0.418 6.418 5 C -0.089 4.089 6 H 0.160 0.840 7 C -0.155 4.155 8 C 0.006 3.994 9 N -0.365 5.365 10 C 0.401 3.599 11 O -0.519 6.519 12 N -0.384 5.384 13 C 0.036 3.964 14 C -0.064 4.064 15 C -0.177 4.177 16 C -0.178 4.178 17 C 0.002 3.998 18 C -0.549 4.549 19 H 0.092 0.908 20 C -0.204 4.204 21 N -0.580 5.580 22 Si 0.785 3.215 23 H -0.179 1.179 24 H -0.212 1.212 25 H -0.211 1.211 26 C -0.007 4.007 27 C -0.104 4.104 28 H 0.078 0.922 29 C -0.214 4.214 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.071 0.929 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.247 0.753 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.003 0.997 47 H 0.006 0.994 48 H 0.068 0.932 49 H 0.105 0.895 50 H 0.122 0.878 51 H 0.093 0.907 52 H 0.084 0.916 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.867 -17.452 -15.773 32.117 hybrid contribution 0.224 1.362 0.478 1.461 sum -21.643 -16.089 -15.295 31.004 Atomic orbital electron populations 1.23514 0.75104 1.05585 1.02318 1.86500 1.24671 1.32919 1.83603 1.24085 0.92561 0.81122 0.71211 1.90617 1.67950 1.37013 1.46207 1.21201 0.86024 0.98616 1.03036 0.84035 1.21880 0.95306 1.02662 0.95677 1.21590 0.93359 0.80352 1.04053 1.47363 1.46481 1.13649 1.29028 1.16084 0.79655 0.81731 0.82414 1.90877 1.65153 1.63953 1.31938 1.45221 1.43774 1.14337 1.35096 1.21060 0.89330 0.93759 0.92271 1.20708 0.96626 0.91911 0.97185 1.21677 0.99974 1.01895 0.94165 1.21685 0.95556 0.99962 1.00597 1.18970 0.92426 0.95105 0.93264 1.21624 1.20712 0.99466 1.13109 0.90824 1.25968 0.96624 1.02545 0.95277 1.70131 1.27899 1.39007 1.20939 0.85476 0.77901 0.79653 0.78482 1.17949 1.21213 1.21070 1.21935 0.92156 0.96541 0.90031 1.21318 0.94951 0.93584 1.00575 0.92245 1.22016 1.02315 1.00900 0.96205 0.91840 0.85209 0.92520 0.87125 0.92945 0.88251 0.90395 0.75318 0.94194 0.93659 0.91300 0.92477 0.94234 0.94651 0.92382 0.91556 0.99705 0.99405 0.93223 0.89531 0.87778 0.90735 0.91592 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.36 -4.88 10.44 -51.33 -0.54 -5.42 16 3 C 0.47 7.42 6.96 71.24 0.50 7.92 16 4 O -0.53 -11.46 13.33 21.97 0.29 -11.17 16 5 C -0.07 -0.82 2.14 -11.51 -0.02 -0.85 16 6 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 7 C -0.12 -1.52 5.30 30.67 0.16 -1.36 16 8 C 0.13 2.09 6.44 86.36 0.56 2.65 16 9 N -0.63 -12.82 2.97 -836.89 -2.49 -15.31 16 10 C 0.70 21.21 8.29 179.05 1.49 22.70 16 11 O -0.64 -25.37 15.77 -3.99 -0.06 -25.43 16 12 N -0.73 -20.81 4.87 -478.52 -2.33 -23.14 16 13 C 0.16 5.89 4.57 86.38 0.39 6.29 16 14 C -0.06 -2.42 0.54 -52.18 -0.03 -2.45 16 15 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 16 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 17 C 0.04 2.04 4.04 29.85 0.12 2.16 16 18 C -0.51 -27.36 7.65 25.60 0.20 -27.16 16 19 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 20 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 21 N -0.94 -57.30 13.29 21.45 0.28 -57.01 16 22 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 25 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 26 C 0.12 1.55 5.67 86.36 0.49 2.04 16 27 C -0.08 -1.18 2.06 -10.72 -0.02 -1.20 16 28 H 0.06 1.16 8.13 -2.38 -0.02 1.14 16 29 C -0.16 -1.96 8.86 71.98 0.64 -1.33 16 30 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 31 H 0.13 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.06 0.61 8.13 -2.38 -0.02 0.59 16 33 H 0.11 1.01 8.08 -2.39 -0.02 0.99 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.69 6.99 -2.39 -0.02 1.67 16 37 H 0.41 9.16 3.65 -92.71 -0.34 8.83 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 1.69 6.86 -2.39 -0.02 1.68 16 41 H 0.06 2.01 6.62 -2.38 -0.02 2.00 16 42 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 2.09 6.61 -2.39 -0.02 2.08 16 45 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 46 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 47 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 48 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 49 H 0.09 1.14 5.65 -2.39 -0.01 1.13 16 50 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 51 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.07 1.13 5.41 -2.39 -0.01 1.12 16 53 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -76.15 407.13 5.03 -71.12 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.56 Total: 16.65 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 7.28 Total: 4.01 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -4.53 Total: -95.45 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.31 Total: -42.02 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -76.15 5.03 -71.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358740268.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.239 kcal (2) G-P(sol) polarization free energy of solvation -76.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds