Wall clock time and date at job start Sat Apr 11 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00017 * 2 1 4 4 O 1.20824 * 119.99917 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00031 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.44792 * 60.03635 * 5 3 2 7 7 C 1.53041 * 109.45955 * 300.07124 * 5 3 2 8 8 C 1.53195 * 109.31435 * 178.61455 * 7 5 3 9 9 N 1.46921 * 108.77414 * 54.63109 * 8 7 5 10 10 C 1.34776 * 120.62841 * 126.37438 * 9 8 7 11 11 O 1.21587 * 120.00005 * 174.98366 * 10 9 8 12 12 N 1.34771 * 120.00245 * 354.98239 * 10 9 8 13 13 C 1.46501 * 120.00471 * 185.07707 * 12 10 9 14 14 C 1.52998 * 109.47148 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47335 * 299.99676 * 14 13 12 16 16 C 1.53005 * 109.47237 * 60.00075 * 14 13 12 17 17 C 1.53009 * 109.46996 * 179.97438 * 14 13 12 18 18 C 1.50695 * 109.46943 * 179.97438 * 17 14 13 19 19 H 1.07997 * 120.00182 * 0.02562 * 18 17 14 20 20 C 1.37883 * 119.99757 * 180.02562 * 18 17 14 21 21 N 1.31508 * 120.00211 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99835 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47283 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46929 * 120.00576 * 22 20 18 25 25 H 1.48501 * 109.46876 * 240.00209 * 22 20 18 26 26 C 1.46929 * 118.74341 * 306.39333 * 9 8 7 27 27 C 1.53034 * 109.46271 * 180.02562 * 5 3 2 28 28 H 1.09004 * 109.52567 * 301.35199 * 27 5 3 29 29 C 1.53002 * 109.49878 * 61.43005 * 27 5 3 30 30 H 1.09003 * 109.46917 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46896 * 299.99265 * 1 2 3 32 32 H 1.09003 * 109.47208 * 59.99756 * 1 2 3 33 33 H 1.09001 * 109.50176 * 58.66596 * 7 5 3 34 34 H 1.09001 * 109.52710 * 298.57931 * 7 5 3 35 35 H 1.09003 * 109.58648 * 294.85014 * 8 7 5 36 36 H 1.08997 * 109.70677 * 174.49683 * 8 7 5 37 37 H 0.97002 * 119.99752 * 5.06992 * 12 10 9 38 38 H 1.09004 * 109.46857 * 299.99913 * 13 12 10 39 39 H 1.08997 * 109.47109 * 59.99447 * 13 12 10 40 40 H 1.08999 * 109.47155 * 60.00683 * 15 14 13 41 41 H 1.09002 * 109.47257 * 179.97438 * 15 14 13 42 42 H 1.08997 * 109.47011 * 299.99827 * 15 14 13 43 43 H 1.09004 * 109.47140 * 59.99628 * 16 14 13 44 44 H 1.08996 * 109.47273 * 179.97438 * 16 14 13 45 45 H 1.09001 * 109.46879 * 299.99983 * 16 14 13 46 46 H 1.08990 * 109.47317 * 300.00215 * 17 14 13 47 47 H 1.09005 * 109.46590 * 60.00305 * 17 14 13 48 48 H 0.96993 * 120.00304 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.58724 * 293.82062 * 26 9 8 50 50 H 1.08994 * 109.58543 * 173.39153 * 26 9 8 51 51 H 1.09001 * 109.46972 * 179.84017 * 29 27 5 52 52 H 1.09004 * 109.46808 * 59.84297 * 29 27 5 53 53 H 1.08995 * 109.47180 * 299.84271 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9552 0.7814 -0.8913 7 6 4.1138 0.5792 1.2478 8 6 5.6447 0.6311 1.2265 9 7 6.0685 2.0302 1.0805 10 6 6.9348 2.5800 1.9543 11 8 7.3484 3.7087 1.7718 12 7 7.3427 1.8788 3.0305 13 6 8.1956 2.5136 4.0384 14 6 8.5112 1.5072 5.1466 15 6 7.2082 1.0432 5.8005 16 6 9.2393 0.3016 4.5486 17 6 9.4026 2.1701 6.1989 18 6 9.7129 1.1789 7.2908 19 1 9.3146 0.1764 7.2392 20 6 10.5053 1.5520 8.3557 21 7 10.9898 2.7730 8.4188 22 14 10.8906 0.3232 9.7089 23 1 10.2308 -0.9718 9.4041 24 1 12.3596 0.1225 9.7916 25 1 10.3880 0.8420 11.0064 26 6 5.5296 2.8189 -0.0360 27 6 4.0000 2.7425 0.0002 28 1 3.5902 3.2439 -0.8767 29 6 3.4838 3.4269 1.2675 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 3.7852 -0.4600 1.2590 34 1 3.7451 1.0870 2.1391 35 1 6.0184 0.0465 0.3857 36 1 6.0392 0.2250 2.1578 37 1 7.0715 0.9537 3.1378 38 1 9.1238 2.8446 3.5725 39 1 7.6769 3.3722 4.4647 40 1 6.5736 0.5708 5.0507 41 1 7.4330 0.3258 6.5897 42 1 6.6896 1.9020 6.2265 43 1 10.1677 0.6322 4.0828 44 1 9.4645 -0.4152 5.3382 45 1 8.6046 -0.1707 3.7987 46 1 10.3308 2.5003 5.7329 47 1 8.8842 3.0291 6.6250 48 1 11.5469 3.0356 9.1681 49 1 5.8939 2.4127 -0.9796 50 1 5.8460 3.8571 0.0638 51 1 3.7953 4.4714 1.2689 52 1 3.8929 2.9245 2.1441 53 1 2.3955 3.3723 1.2923 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358740271.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:09 Heat of formation + Delta-G solvation = -125.749035 kcal Electronic energy + Delta-G solvation = -31271.057246 eV Core-core repulsion = 27142.642100 eV Total energy + Delta-G solvation = -4128.415146 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.38344 -40.25163 -38.30466 -37.08996 -36.64078 -34.06814 -33.23764 -32.24101 -31.81442 -28.68446 -27.42867 -27.07560 -26.60642 -26.51479 -25.29324 -23.41416 -22.85513 -21.88723 -20.33520 -19.21345 -18.76591 -17.96916 -17.59531 -16.97407 -16.60599 -16.36468 -15.95085 -15.73403 -15.16269 -14.64971 -14.52367 -14.29667 -14.13511 -14.06901 -13.82035 -13.64858 -13.15612 -13.11878 -13.00131 -12.73174 -12.61179 -12.23288 -12.09065 -12.06784 -11.99961 -11.84068 -11.46351 -11.16395 -11.12231 -11.02796 -10.93138 -10.89243 -10.82975 -10.64577 -10.50323 -10.39076 -10.23301 -9.95116 -9.87413 -9.20085 -8.92653 -8.90921 -8.45097 -8.35918 -5.99668 -4.00877 1.81024 2.29521 2.69294 3.30060 3.36453 3.38221 3.40301 3.96209 4.08139 4.24462 4.36039 4.45467 4.63664 4.68983 4.73460 4.77779 4.86867 4.95283 5.10426 5.14092 5.26739 5.30251 5.35912 5.41406 5.49794 5.52841 5.60422 5.64931 5.73173 5.75328 5.80510 5.90180 6.04754 6.16900 6.20262 6.25924 6.28830 6.41917 6.43178 6.60544 6.62784 6.80247 6.97916 7.07012 7.07772 7.14899 7.37334 7.65267 7.77458 7.99115 8.10239 8.40947 8.76725 9.04197 9.62194 11.11806 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.002271 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.117176 B =12328.225437 C =13061.931789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.499 6.499 5 C -0.073 4.073 6 H 0.111 0.889 7 C -0.130 4.130 8 C 0.115 3.885 9 N -0.633 5.633 10 C 0.705 3.295 11 O -0.590 6.590 12 N -0.738 5.738 13 C 0.146 3.854 14 C -0.072 4.072 15 C -0.125 4.125 16 C -0.126 4.126 17 C 0.036 3.964 18 C -0.510 4.510 19 H 0.060 0.940 20 C 0.055 3.945 21 N -0.894 5.894 22 Si 0.888 3.112 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.136 3.864 27 C -0.090 4.090 28 H 0.090 0.910 29 C -0.155 4.155 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.393 0.607 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.026 0.974 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.026 0.974 46 H 0.019 0.981 47 H 0.018 0.982 48 H 0.259 0.741 49 H 0.066 0.934 50 H 0.101 0.899 51 H 0.058 0.942 52 H 0.056 0.944 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.783 -7.817 -19.828 28.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.386 6.386 5 C -0.092 4.092 6 H 0.129 0.871 7 C -0.169 4.169 8 C -0.009 4.009 9 N -0.372 5.372 10 C 0.407 3.593 11 O -0.468 6.468 12 N -0.395 5.395 13 C 0.022 3.978 14 C -0.073 4.073 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.002 4.002 18 C -0.548 4.548 19 H 0.078 0.922 20 C -0.146 4.146 21 N -0.533 5.533 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.212 1.212 26 C 0.013 3.987 27 C -0.109 4.109 28 H 0.108 0.892 29 C -0.212 4.212 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.230 0.770 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.069 0.931 49 H 0.084 0.916 50 H 0.119 0.881 51 H 0.077 0.923 52 H 0.075 0.925 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.581 -6.557 -19.808 27.939 hybrid contribution -0.153 -1.065 0.865 1.380 sum -18.734 -7.622 -18.943 27.711 Atomic orbital electron populations 1.23275 0.76304 1.03747 1.02578 1.86511 1.23445 1.33566 1.84041 1.23815 0.92009 0.81284 0.72122 1.90638 1.67160 1.36134 1.44671 1.21117 0.86906 0.99353 1.01852 0.87106 1.22001 0.96095 1.01697 0.97080 1.21577 0.93587 0.83022 1.02725 1.47241 1.47797 1.12132 1.30028 1.15887 0.79273 0.84405 0.79765 1.90908 1.60603 1.18662 1.76593 1.45554 1.55116 1.15708 1.23107 1.21497 0.93185 0.95714 0.87367 1.20910 0.96709 0.94845 0.94790 1.21746 0.95742 1.01193 0.99588 1.21752 0.98984 0.98123 0.99453 1.19092 0.93650 0.95668 0.91755 1.21213 1.30158 0.97985 1.05457 0.92224 1.25021 0.96185 0.95117 0.98245 1.69970 1.34542 1.17630 1.31184 0.86597 0.78028 0.81515 0.82194 1.19823 1.21154 1.21157 1.21477 0.90888 0.98253 0.88090 1.21430 0.95824 0.92653 1.01028 0.89222 1.22020 1.02278 1.00547 0.96399 0.88056 0.91838 0.91929 0.89240 0.90155 0.90832 0.89736 0.76994 0.91931 0.92117 0.95482 0.91464 0.93365 0.93316 0.91458 0.95454 0.96287 0.96320 0.93099 0.91618 0.88097 0.92323 0.92537 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.82 10.44 -39.25 -0.41 -3.23 16 3 C 0.46 4.12 6.97 36.00 0.25 4.37 16 4 O -0.50 -5.70 13.50 -18.75 -0.25 -5.95 16 5 C -0.07 -0.52 2.37 -91.74 -0.22 -0.74 16 6 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 7 C -0.13 -0.89 4.95 -26.61 -0.13 -1.02 16 8 C 0.11 0.87 6.43 -3.71 -0.02 0.84 16 9 N -0.63 -6.93 2.41 -178.50 -0.43 -7.36 16 10 C 0.71 10.75 8.30 -86.92 -0.72 10.03 16 11 O -0.59 -11.45 15.78 5.29 0.08 -11.37 16 12 N -0.74 -10.75 4.87 -65.23 -0.32 -11.07 16 13 C 0.15 2.59 4.57 -4.04 -0.02 2.57 16 14 C -0.07 -1.35 0.54 -154.50 -0.08 -1.43 16 15 C -0.13 -2.16 8.05 37.15 0.30 -1.86 16 16 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 17 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 18 C -0.51 -13.41 7.65 -34.44 -0.26 -13.67 16 19 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 20 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 21 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 22 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.14 1.31 5.82 -3.71 -0.02 1.29 16 27 C -0.09 -0.77 2.35 -90.50 -0.21 -0.99 16 28 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 29 C -0.16 -1.66 8.40 37.16 0.31 -1.35 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.05 16 32 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 33 H 0.09 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.08 0.67 6.33 -51.93 -0.33 0.34 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.63 5.56 -51.93 -0.29 0.34 16 37 H 0.39 4.79 3.62 -40.82 -0.15 4.65 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 41 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 45 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.10 1.19 7.03 -51.93 -0.37 0.83 16 51 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 52 H 0.06 0.66 5.97 -51.93 -0.31 0.35 16 53 H 0.07 0.84 5.65 -51.93 -0.29 0.55 16 LS Contribution 402.75 15.07 6.07 6.07 Total: -1.00 -33.15 402.75 -8.12 -41.27 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.90 Total: 1.53 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 0.32 Total: -0.36 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.01 Total: -44.02 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.58 Total: -20.55 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.15 -8.12 -41.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358740271.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.475 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds