Wall clock time and date at job start Sat Apr 11 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00017 * 2 1 4 4 O 1.20824 * 119.99917 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00031 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.44792 * 60.03635 * 5 3 2 7 7 C 1.53041 * 109.45955 * 300.07124 * 5 3 2 8 8 C 1.53195 * 109.31435 * 178.61455 * 7 5 3 9 9 N 1.46921 * 108.77414 * 54.63109 * 8 7 5 10 10 C 1.34776 * 120.62841 * 126.37438 * 9 8 7 11 11 O 1.21587 * 120.00005 * 174.98366 * 10 9 8 12 12 N 1.34771 * 120.00245 * 354.98239 * 10 9 8 13 13 C 1.46501 * 120.00471 * 185.07707 * 12 10 9 14 14 C 1.52998 * 109.47148 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47335 * 299.99676 * 14 13 12 16 16 C 1.53005 * 109.47237 * 60.00075 * 14 13 12 17 17 C 1.53009 * 109.46996 * 179.97438 * 14 13 12 18 18 C 1.50695 * 109.46943 * 179.97438 * 17 14 13 19 19 H 1.07997 * 120.00182 * 0.02562 * 18 17 14 20 20 C 1.37883 * 119.99757 * 180.02562 * 18 17 14 21 21 N 1.31508 * 120.00211 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99835 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47283 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46929 * 120.00576 * 22 20 18 25 25 H 1.48501 * 109.46876 * 240.00209 * 22 20 18 26 26 C 1.46929 * 118.74341 * 306.39333 * 9 8 7 27 27 C 1.53034 * 109.46271 * 180.02562 * 5 3 2 28 28 H 1.09004 * 109.52567 * 301.35199 * 27 5 3 29 29 C 1.53002 * 109.49878 * 61.43005 * 27 5 3 30 30 H 1.09003 * 109.46917 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46896 * 299.99265 * 1 2 3 32 32 H 1.09003 * 109.47208 * 59.99756 * 1 2 3 33 33 H 1.09001 * 109.50176 * 58.66596 * 7 5 3 34 34 H 1.09001 * 109.52710 * 298.57931 * 7 5 3 35 35 H 1.09003 * 109.58648 * 294.85014 * 8 7 5 36 36 H 1.08997 * 109.70677 * 174.49683 * 8 7 5 37 37 H 0.97002 * 119.99752 * 5.06992 * 12 10 9 38 38 H 1.09004 * 109.46857 * 299.99913 * 13 12 10 39 39 H 1.08997 * 109.47109 * 59.99447 * 13 12 10 40 40 H 1.08999 * 109.47155 * 60.00683 * 15 14 13 41 41 H 1.09002 * 109.47257 * 179.97438 * 15 14 13 42 42 H 1.08997 * 109.47011 * 299.99827 * 15 14 13 43 43 H 1.09004 * 109.47140 * 59.99628 * 16 14 13 44 44 H 1.08996 * 109.47273 * 179.97438 * 16 14 13 45 45 H 1.09001 * 109.46879 * 299.99983 * 16 14 13 46 46 H 1.08990 * 109.47317 * 300.00215 * 17 14 13 47 47 H 1.09005 * 109.46590 * 60.00305 * 17 14 13 48 48 H 0.96993 * 120.00304 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.58724 * 293.82062 * 26 9 8 50 50 H 1.08994 * 109.58543 * 173.39153 * 26 9 8 51 51 H 1.09001 * 109.46972 * 179.84017 * 29 27 5 52 52 H 1.09004 * 109.46808 * 59.84297 * 29 27 5 53 53 H 1.08995 * 109.47180 * 299.84271 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9552 0.7814 -0.8913 7 6 4.1138 0.5792 1.2478 8 6 5.6447 0.6311 1.2265 9 7 6.0685 2.0302 1.0805 10 6 6.9348 2.5800 1.9543 11 8 7.3484 3.7087 1.7718 12 7 7.3427 1.8788 3.0305 13 6 8.1956 2.5136 4.0384 14 6 8.5112 1.5072 5.1466 15 6 7.2082 1.0432 5.8005 16 6 9.2393 0.3016 4.5486 17 6 9.4026 2.1701 6.1989 18 6 9.7129 1.1789 7.2908 19 1 9.3146 0.1764 7.2392 20 6 10.5053 1.5520 8.3557 21 7 10.9898 2.7730 8.4188 22 14 10.8906 0.3232 9.7089 23 1 10.2308 -0.9718 9.4041 24 1 12.3596 0.1225 9.7916 25 1 10.3880 0.8420 11.0064 26 6 5.5296 2.8189 -0.0360 27 6 4.0000 2.7425 0.0002 28 1 3.5902 3.2439 -0.8767 29 6 3.4838 3.4269 1.2675 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 3.7852 -0.4600 1.2590 34 1 3.7451 1.0870 2.1391 35 1 6.0184 0.0465 0.3857 36 1 6.0392 0.2250 2.1578 37 1 7.0715 0.9537 3.1378 38 1 9.1238 2.8446 3.5725 39 1 7.6769 3.3722 4.4647 40 1 6.5736 0.5708 5.0507 41 1 7.4330 0.3258 6.5897 42 1 6.6896 1.9020 6.2265 43 1 10.1677 0.6322 4.0828 44 1 9.4645 -0.4152 5.3382 45 1 8.6046 -0.1707 3.7987 46 1 10.3308 2.5003 5.7329 47 1 8.8842 3.0291 6.6250 48 1 11.5469 3.0356 9.1681 49 1 5.8939 2.4127 -0.9796 50 1 5.8460 3.8571 0.0638 51 1 3.7953 4.4714 1.2689 52 1 3.8929 2.9245 2.1441 53 1 2.3955 3.3723 1.2923 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358740271.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:08 Heat of formation + Delta-G solvation = -145.340211 kcal Electronic energy + Delta-G solvation = -31271.906783 eV Core-core repulsion = 27142.642100 eV Total energy + Delta-G solvation = -4129.264683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.12157 -41.23254 -39.34390 -38.37999 -37.42405 -35.39526 -34.58791 -33.63606 -32.77052 -29.28050 -29.12241 -28.22503 -27.93602 -27.55321 -26.45005 -24.68903 -24.06438 -22.65786 -21.35558 -20.38688 -19.61826 -19.02655 -18.52688 -18.34113 -17.64657 -17.30141 -17.06231 -16.74139 -16.46783 -16.03815 -15.54636 -15.36921 -15.20688 -15.00488 -14.77799 -14.58834 -14.49850 -14.32742 -14.04741 -13.92981 -13.71388 -13.61594 -13.18210 -12.89034 -12.84878 -12.76682 -12.67946 -12.58033 -12.56537 -12.32519 -12.21040 -12.15109 -11.92666 -11.75461 -11.62506 -11.56681 -11.51456 -11.31794 -11.14101 -10.94100 -10.81290 -10.50559 -10.16764 -9.44494 -8.12145 -6.19821 1.16683 1.43213 1.44136 1.55836 1.64357 1.76425 2.19277 2.45681 2.98488 3.22482 3.43824 3.62197 3.76773 3.94794 3.99689 4.11824 4.13364 4.19802 4.24950 4.32756 4.34396 4.35979 4.50035 4.60287 4.66595 4.70523 4.73145 4.74863 4.76080 4.81624 4.85408 4.88395 4.98946 5.06323 5.08702 5.11602 5.14617 5.15250 5.32807 5.42278 5.49977 5.51527 5.52840 5.56810 5.59708 5.63041 5.83239 5.92083 5.94712 6.32765 6.74582 6.95281 7.02095 7.47855 7.60255 9.00651 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.002271 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.117176 B =12328.225437 C =13061.931789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.532 6.532 5 C -0.069 4.069 6 H 0.144 0.856 7 C -0.124 4.124 8 C 0.109 3.891 9 N -0.624 5.624 10 C 0.701 3.299 11 O -0.639 6.639 12 N -0.725 5.725 13 C 0.161 3.839 14 C -0.063 4.063 15 C -0.120 4.120 16 C -0.120 4.120 17 C 0.039 3.961 18 C -0.510 4.510 19 H 0.075 0.925 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.959 3.041 23 H -0.255 1.255 24 H -0.285 1.285 25 H -0.286 1.286 26 C 0.136 3.864 27 C -0.083 4.083 28 H 0.096 0.904 29 C -0.151 4.151 30 H 0.130 0.870 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.408 0.592 38 H 0.042 0.958 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.034 0.966 43 H 0.036 0.964 44 H 0.057 0.943 45 H 0.070 0.930 46 H -0.014 1.014 47 H -0.016 1.016 48 H 0.259 0.741 49 H 0.097 0.903 50 H 0.072 0.928 51 H 0.041 0.959 52 H 0.045 0.955 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.236 -11.862 -21.360 31.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.310 3.690 4 O -0.422 6.422 5 C -0.087 4.087 6 H 0.162 0.838 7 C -0.162 4.162 8 C -0.013 4.013 9 N -0.361 5.361 10 C 0.402 3.598 11 O -0.521 6.521 12 N -0.384 5.384 13 C 0.036 3.964 14 C -0.063 4.063 15 C -0.177 4.177 16 C -0.177 4.177 17 C 0.002 3.998 18 C -0.548 4.548 19 H 0.093 0.907 20 C -0.204 4.204 21 N -0.581 5.581 22 Si 0.785 3.215 23 H -0.178 1.178 24 H -0.212 1.212 25 H -0.212 1.212 26 C 0.013 3.987 27 C -0.102 4.102 28 H 0.114 0.886 29 C -0.208 4.208 30 H 0.148 0.852 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.248 0.752 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.004 0.996 47 H 0.003 0.997 48 H 0.068 0.932 49 H 0.115 0.885 50 H 0.090 0.910 51 H 0.060 0.940 52 H 0.064 0.936 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.085 -10.687 -21.370 31.213 hybrid contribution 0.209 0.229 1.275 1.312 sum -19.876 -10.458 -20.095 30.137 Atomic orbital electron populations 1.23503 0.75207 1.05558 1.02240 1.86499 1.24552 1.32819 1.83605 1.24120 0.92601 0.81109 0.71142 1.90637 1.67978 1.37240 1.46303 1.21148 0.85914 0.98142 1.03531 0.83841 1.21970 0.95369 1.02890 0.95994 1.21921 0.94070 0.80842 1.04483 1.47284 1.46191 1.13688 1.28982 1.16066 0.79739 0.83801 0.80194 1.90881 1.62520 1.20972 1.77735 1.45186 1.54646 1.16222 1.22343 1.21035 0.92626 0.95020 0.87679 1.20700 0.96778 0.95280 0.93590 1.21674 0.95086 1.00611 1.00306 1.21683 0.99140 0.96885 1.00024 1.18978 0.93010 0.94821 0.93037 1.21618 1.29114 0.98658 1.05379 0.90730 1.25975 0.96406 0.96906 1.01149 1.70131 1.35819 1.19945 1.32185 0.85480 0.77675 0.79656 0.78726 1.17826 1.21156 1.21216 1.21566 0.91389 0.96957 0.88769 1.21333 0.94923 0.94036 0.99894 0.88591 1.21949 1.01653 0.99760 0.97404 0.85192 0.92526 0.92016 0.86658 0.91982 0.87573 0.89149 0.75195 0.94003 0.94298 0.91258 0.92408 0.94691 0.94489 0.92420 0.91153 0.99610 0.99745 0.93246 0.88527 0.90956 0.94004 0.93574 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.36 -4.58 10.44 -51.40 -0.54 -5.11 16 3 C 0.47 7.19 6.97 71.23 0.50 7.68 16 4 O -0.53 -11.64 13.50 21.97 0.30 -11.35 16 5 C -0.07 -0.75 2.37 -11.52 -0.03 -0.78 16 6 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 7 C -0.12 -1.21 4.95 30.67 0.15 -1.06 16 8 C 0.11 1.17 6.43 86.36 0.56 1.73 16 9 N -0.62 -12.27 2.41 -836.91 -2.02 -14.28 16 10 C 0.70 20.86 8.30 179.06 1.49 22.35 16 11 O -0.64 -25.56 15.78 -3.99 -0.06 -25.62 16 12 N -0.73 -20.15 4.87 -478.54 -2.33 -22.48 16 13 C 0.16 5.87 4.57 86.38 0.39 6.26 16 14 C -0.06 -2.35 0.54 -52.18 -0.03 -2.38 16 15 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 16 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 17 C 0.04 1.99 4.04 29.85 0.12 2.11 16 18 C -0.51 -27.07 7.65 25.60 0.20 -26.87 16 19 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 20 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 21 N -0.94 -57.30 13.29 21.45 0.28 -57.01 16 22 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 23 H -0.25 -10.64 7.11 99.48 0.71 -9.94 16 24 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 26 C 0.14 2.38 5.82 86.36 0.50 2.89 16 27 C -0.08 -1.28 2.35 -10.72 -0.03 -1.31 16 28 H 0.10 1.42 8.07 -2.39 -0.02 1.40 16 29 C -0.15 -3.25 8.40 71.98 0.60 -2.65 16 30 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 32 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 33 H 0.12 0.63 8.08 -2.39 -0.02 0.61 16 34 H 0.06 0.87 6.33 -2.39 -0.02 0.86 16 35 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 0.89 5.56 -2.39 -0.01 0.88 16 37 H 0.41 8.55 3.62 -92.71 -0.34 8.22 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 1.67 6.86 -2.39 -0.02 1.66 16 41 H 0.06 2.02 6.62 -2.39 -0.02 2.00 16 42 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 44 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 45 H 0.07 1.67 6.86 -2.39 -0.02 1.66 16 46 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 47 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 48 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 49 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.07 1.73 7.03 -2.39 -0.02 1.71 16 51 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.05 1.07 5.97 -2.38 -0.01 1.06 16 53 H 0.06 1.51 5.65 -2.39 -0.01 1.50 16 Total: -1.00 -77.16 402.75 5.47 -71.69 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.57 Total: 15.98 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 7.24 Total: 2.79 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -4.06 Total: -93.78 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -0.30 Total: -42.08 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -77.16 5.47 -71.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358740271.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.650 kcal (2) G-P(sol) polarization free energy of solvation -77.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds