Wall clock time and date at job start Sat Apr 11 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 110.05007 * 2 1 4 4 O 1.43894 * 109.90752 * 121.18616 * 2 1 3 5 5 C 1.44425 * 106.99897 * 145.73850 * 4 2 1 6 6 C 1.55097 * 103.55738 * 320.25919 * 5 4 2 7 7 C 1.53587 * 109.90725 * 238.82521 * 2 1 3 8 8 C 1.52475 * 110.45968 * 356.91234 * 7 2 1 9 9 N 1.47165 * 109.30745 * 178.13553 * 8 7 2 10 10 C 1.46905 * 111.01892 * 178.72263 * 9 8 7 11 11 C 1.53005 * 109.46969 * 189.57504 * 10 9 8 12 12 C 1.50697 * 109.47012 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00305 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99797 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00284 * 359.97438 * 14 12 11 16 16 C 1.46506 * 120.00121 * 179.97438 * 14 12 11 17 17 C 1.50701 * 109.47049 * 89.99662 * 16 14 12 18 18 H 1.08001 * 120.00047 * 0.02562 * 17 16 14 19 19 C 1.37875 * 120.00064 * 180.02562 * 17 16 14 20 20 N 1.31512 * 119.99930 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00011 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47198 * 90.00166 * 21 19 17 23 23 H 1.48499 * 109.47282 * 210.00226 * 21 19 17 24 24 H 1.48501 * 109.47172 * 330.00093 * 21 19 17 25 25 C 1.47013 * 110.66124 * 302.44453 * 9 8 7 26 26 C 1.53090 * 109.39873 * 59.08601 * 25 9 8 27 27 H 1.09001 * 109.51741 * 62.55821 * 26 25 9 28 28 C 1.53002 * 109.51559 * 182.72767 * 26 25 9 29 29 O 1.42311 * 110.57731 * 119.95691 * 7 2 1 30 30 H 1.09007 * 109.47119 * 181.17012 * 1 2 3 31 31 H 1.08997 * 109.46942 * 301.17047 * 1 2 3 32 32 H 1.08995 * 109.47182 * 61.17555 * 1 2 3 33 33 H 1.09006 * 110.60540 * 78.77830 * 5 4 2 34 34 H 1.09005 * 110.60489 * 201.58513 * 5 4 2 35 35 H 1.09003 * 110.92803 * 278.44956 * 6 5 4 36 36 H 1.08994 * 110.93480 * 154.78369 * 6 5 4 37 37 H 1.08997 * 109.50472 * 298.08276 * 8 7 2 38 38 H 1.09006 * 109.49854 * 58.15529 * 8 7 2 39 39 H 1.08999 * 109.47386 * 309.57472 * 10 9 8 40 40 H 1.09000 * 109.47130 * 69.57870 * 10 9 8 41 41 H 1.08996 * 109.47344 * 300.00613 * 11 10 9 42 42 H 1.09000 * 109.46897 * 60.00222 * 11 10 9 43 43 H 1.09005 * 109.47087 * 89.99694 * 15 14 12 44 44 H 1.08994 * 109.47350 * 210.00159 * 15 14 12 45 45 H 1.09003 * 109.47243 * 330.00367 * 15 14 12 46 46 H 1.08998 * 109.46921 * 209.99957 * 16 14 12 47 47 H 1.09003 * 109.46792 * 329.99844 * 16 14 12 48 48 H 0.96998 * 119.99997 * 179.97438 * 20 19 17 49 49 H 1.09002 * 109.48832 * 299.10119 * 25 9 8 50 50 H 1.08999 * 109.48424 * 179.06874 * 25 9 8 51 51 H 1.08999 * 109.47249 * 60.00312 * 28 26 25 52 52 H 1.09008 * 109.46779 * 179.97438 * 28 26 25 53 53 H 1.09000 * 109.47146 * 300.00021 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 8 2.0200 -0.7006 1.1574 5 6 3.2370 -1.3701 0.7619 6 6 2.9190 -1.8899 -0.6643 7 6 2.0530 -0.7475 -1.2356 8 6 0.8932 -1.3242 -2.0401 9 7 1.4192 -1.9953 -3.2395 10 6 0.3331 -2.5922 -4.0284 11 6 0.9270 -3.4765 -5.1267 12 6 -0.1871 -4.0892 -5.9355 13 8 -1.3424 -3.8434 -5.6603 14 7 0.1003 -4.9113 -6.9641 15 6 1.4958 -5.2088 -7.2962 16 6 -0.9828 -5.5075 -7.7501 17 6 -1.3268 -4.5985 -8.9018 18 1 -0.7919 -3.6698 -9.0352 19 6 -2.3245 -4.9525 -9.7852 20 7 -2.6243 -4.1594 -10.7905 21 14 -3.2492 -6.5590 -9.5549 22 1 -4.4363 -6.3278 -8.6932 23 1 -3.6897 -7.0706 -10.8776 24 1 -2.3567 -7.5560 -8.9109 25 6 2.2086 -1.0595 -4.0534 26 6 3.3696 -0.5136 -3.2181 27 1 4.0293 -1.3329 -2.9321 28 6 4.1530 0.5118 -4.0402 29 8 2.8488 0.1139 -2.0417 30 1 -0.3634 -1.0275 0.0210 31 1 -0.3633 0.5319 0.8793 32 1 -0.3633 0.4954 -0.9003 33 1 4.0705 -0.6680 0.7374 34 1 3.4550 -2.1991 1.4352 35 1 2.3556 -2.8221 -0.6224 36 1 3.8323 -2.0144 -1.2461 37 1 0.3493 -2.0447 -1.4292 38 1 0.2213 -0.5192 -2.3381 39 1 -0.2990 -3.1964 -3.3776 40 1 -0.2637 -1.8009 -4.4820 41 1 1.5592 -2.8723 -5.7774 42 1 1.5238 -4.2677 -4.6730 43 1 1.8221 -6.0879 -6.7404 44 1 1.5815 -5.4025 -8.3654 45 1 2.1222 -4.3575 -7.0298 46 1 -0.6622 -6.4758 -8.1346 47 1 -1.8603 -5.6403 -7.1173 48 1 -3.3259 -4.4086 -11.4123 49 1 1.5740 -0.2344 -4.3770 50 1 2.6020 -1.5797 -4.9267 51 1 3.4926 1.3315 -4.3232 52 1 4.9792 0.9002 -3.4446 53 1 4.5450 0.0344 -4.9383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363939293.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:16 Heat of formation + Delta-G solvation = -134.707872 kcal Electronic energy + Delta-G solvation = -31418.470196 eV Core-core repulsion = 27289.666566 eV Total energy + Delta-G solvation = -4128.803630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.00392 -40.74270 -39.25799 -37.22175 -36.57742 -34.73778 -34.51396 -32.86514 -32.42380 -31.34235 -30.14155 -27.87371 -27.44150 -26.83864 -25.79076 -24.30734 -23.83223 -22.51182 -21.86183 -20.24943 -19.91734 -19.16408 -18.45492 -17.99637 -17.17330 -17.16275 -17.06185 -16.84714 -16.46086 -16.30249 -16.08947 -15.73236 -15.26320 -15.06979 -14.71558 -14.65457 -14.43486 -14.02152 -13.86447 -13.70322 -13.62926 -13.56500 -13.49122 -13.31939 -13.23970 -13.14002 -12.87763 -12.77336 -12.72205 -12.41770 -12.36513 -12.25661 -12.11935 -12.03279 -11.81819 -11.77895 -11.75296 -11.28873 -10.84942 -10.71758 -10.68562 -10.56073 -9.50081 -9.39405 -8.35807 -6.40955 1.31808 1.35861 1.44365 1.79185 2.20826 2.29779 2.46242 2.72551 2.85579 2.98896 3.43697 3.60514 3.72185 3.79336 3.82370 3.91221 4.04739 4.06267 4.13276 4.21879 4.25977 4.33306 4.35043 4.40106 4.47773 4.55967 4.56515 4.64447 4.64977 4.67616 4.74848 4.79185 4.82311 4.83069 4.85256 4.91695 4.97155 4.98111 5.00216 5.03835 5.05780 5.12671 5.19679 5.28467 5.44536 5.61006 5.77392 5.80266 5.85524 6.21946 6.25350 6.60274 6.69690 7.19964 7.41269 8.81212 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.002349 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.651015 B =11915.809856 C =12368.298065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.088 3.912 3 H 0.076 0.924 4 O -0.388 6.388 5 C 0.044 3.956 6 C -0.161 4.161 7 C 0.096 3.904 8 C 0.035 3.965 9 N -0.525 5.525 10 C 0.080 3.920 11 C -0.115 4.115 12 C 0.496 3.504 13 O -0.599 6.599 14 N -0.608 5.608 15 C 0.077 3.923 16 C 0.222 3.778 17 C -0.536 4.536 18 H 0.027 0.973 19 C 0.009 3.991 20 N -0.946 5.946 21 Si 0.949 3.051 22 H -0.277 1.277 23 H -0.275 1.275 24 H -0.237 1.237 25 C 0.013 3.987 26 C 0.090 3.910 27 H 0.082 0.918 28 C -0.142 4.142 29 O -0.381 6.381 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.018 0.982 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.051 0.949 47 H 0.018 0.982 48 H 0.268 0.732 49 H 0.028 0.972 50 H 0.103 0.897 51 H 0.054 0.946 52 H 0.072 0.928 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.407 4.342 21.654 28.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.030 3.970 3 H 0.094 0.906 4 O -0.307 6.307 5 C -0.032 4.032 6 C -0.199 4.199 7 C 0.055 3.945 8 C -0.093 4.093 9 N -0.249 5.249 10 C -0.048 4.048 11 C -0.154 4.154 12 C 0.285 3.715 13 O -0.481 6.481 14 N -0.339 5.339 15 C -0.065 4.065 16 C 0.099 3.901 17 C -0.574 4.574 18 H 0.046 0.954 19 C -0.189 4.189 20 N -0.586 5.586 21 Si 0.772 3.228 22 H -0.203 1.203 23 H -0.200 1.200 24 H -0.160 1.160 25 C -0.115 4.115 26 C 0.033 3.967 27 H 0.100 0.900 28 C -0.200 4.200 29 O -0.301 6.301 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.036 0.964 41 H 0.125 0.875 42 H 0.146 0.854 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.069 0.931 47 H 0.036 0.964 48 H 0.077 0.923 49 H 0.047 0.953 50 H 0.121 0.879 51 H 0.073 0.927 52 H 0.091 0.909 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.980 4.272 22.026 28.752 hybrid contribution -1.544 0.277 -1.228 1.992 sum 16.436 4.549 20.798 26.896 Atomic orbital electron populations 1.22027 0.92380 1.03420 1.03147 1.22515 0.95645 0.95902 0.82935 0.90602 1.88928 1.41028 1.67868 1.32911 1.23728 0.87032 0.96893 0.95520 1.23520 1.01272 0.98489 0.96573 1.22359 0.90678 0.90476 0.90958 1.22831 0.96186 0.97991 0.92281 1.62304 1.22894 1.32777 1.06957 1.21649 0.91801 0.96785 0.94573 1.21542 0.96082 1.01122 0.96688 1.21353 0.90721 0.78581 0.80848 1.90638 1.24402 1.62188 1.70863 1.47980 1.08787 1.46685 1.30440 1.21988 0.79737 1.02674 1.02105 1.19339 0.87261 0.93775 0.89712 1.21563 1.19396 1.06135 1.10336 0.95417 1.25876 0.97395 1.01260 0.94333 1.70049 1.32411 1.39652 1.16532 0.85699 0.79429 0.79629 0.78094 1.20294 1.19991 1.15955 1.23019 0.96034 0.94796 0.97615 1.22365 0.93631 0.96298 0.84444 0.90026 1.21775 0.99839 0.98492 0.99873 1.87893 1.67810 1.38456 1.35938 0.91333 0.90901 0.90713 0.91579 0.87136 0.89246 0.88656 0.88676 0.94205 0.90638 0.96381 0.87515 0.85423 0.90073 0.91737 0.89038 0.93111 0.96435 0.92264 0.95340 0.87881 0.92731 0.90916 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.39 71.98 0.60 -1.95 16 2 C 0.09 1.64 3.88 30.79 0.12 1.76 16 3 H 0.08 1.48 7.96 -2.39 -0.02 1.46 16 4 O -0.39 -7.70 11.20 -148.98 -1.67 -9.37 16 5 C 0.04 0.65 7.73 72.70 0.56 1.21 16 6 C -0.16 -2.44 5.98 31.76 0.19 -2.25 16 7 C 0.10 1.75 0.99 -10.32 -0.01 1.74 16 8 C 0.04 0.70 3.03 86.08 0.26 0.96 16 9 N -0.53 -10.82 4.53 -896.06 -4.06 -14.88 16 10 C 0.08 2.11 4.25 86.30 0.37 2.48 16 11 C -0.11 -2.91 4.18 29.85 0.12 -2.78 16 12 C 0.50 19.34 7.67 87.66 0.67 20.02 16 13 O -0.60 -29.68 15.56 -3.02 -0.05 -29.72 16 14 N -0.61 -23.91 2.86 -851.12 -2.43 -26.34 16 15 C 0.08 2.04 10.24 127.77 1.31 3.35 16 16 C 0.22 10.72 4.23 85.63 0.36 11.09 16 17 C -0.54 -31.52 9.94 25.60 0.25 -31.27 16 18 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 19 C 0.01 0.55 5.47 84.65 0.46 1.01 16 20 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 21 Si 0.95 44.43 27.47 68.60 1.88 46.31 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 25 C 0.01 0.25 4.70 86.31 0.41 0.66 16 26 C 0.09 1.44 3.15 30.62 0.10 1.54 16 27 H 0.08 1.14 6.40 -2.39 -0.02 1.13 16 28 C -0.14 -1.83 9.57 71.98 0.69 -1.15 16 29 O -0.38 -7.53 9.87 -148.98 -1.47 -9.00 16 30 H 0.07 1.14 6.75 -2.38 -0.02 1.12 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.23 6.78 -2.39 -0.02 1.21 16 33 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.09 1.39 7.77 -2.39 -0.02 1.37 16 36 H 0.10 1.29 6.21 -2.39 -0.01 1.28 16 37 H 0.10 1.85 6.82 -2.39 -0.02 1.83 16 38 H 0.04 0.89 6.58 -2.38 -0.02 0.87 16 39 H 0.08 2.12 8.02 -2.39 -0.02 2.10 16 40 H 0.02 0.57 8.08 -2.39 -0.02 0.55 16 41 H 0.11 2.33 5.76 -2.39 -0.01 2.32 16 42 H 0.13 2.47 8.11 -2.39 -0.02 2.45 16 43 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.06 1.87 8.07 -2.39 -0.02 1.85 16 45 H 0.09 1.84 6.44 -2.39 -0.02 1.82 16 46 H 0.05 2.24 7.13 -2.39 -0.02 2.22 16 47 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 48 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 49 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.10 1.66 6.35 -2.39 -0.02 1.65 16 51 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 53 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -78.48 401.18 -0.19 -78.67 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.83 Total: 17.63 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 6.47 Total: 6.41 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -6.19 Total: -100.93 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -3.18 Total: -48.10 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Total: -78.48 -0.19 -78.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363939293.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.036 kcal (2) G-P(sol) polarization free energy of solvation -78.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds