Wall clock time and date at job start Sat Apr 11 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.89988 * 2 1 4 4 O 1.43896 * 109.91115 * 238.72525 * 2 1 3 5 5 C 1.44426 * 106.99946 * 266.99039 * 4 2 1 6 6 C 1.55104 * 103.55474 * 320.26770 * 5 4 2 7 7 C 1.53586 * 109.90973 * 121.07733 * 2 1 3 8 8 C 1.52473 * 110.46208 * 235.67521 * 7 2 1 9 9 N 1.47126 * 109.30963 * 178.10231 * 8 7 2 10 10 C 1.46900 * 110.99943 * 178.71872 * 9 8 7 11 11 C 1.52999 * 109.47290 * 57.49659 * 10 9 8 12 12 C 1.50700 * 109.47147 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99673 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99969 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99725 * 0.02562 * 14 12 11 16 16 C 1.46499 * 119.99644 * 179.97438 * 14 12 11 17 17 C 1.50699 * 109.46845 * 90.00935 * 16 14 12 18 18 H 1.07997 * 120.00048 * 359.97438 * 17 16 14 19 19 C 1.37875 * 119.99841 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00167 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00242 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47232 * 59.99715 * 21 19 17 23 23 H 1.48501 * 109.47485 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46977 * 299.99821 * 21 19 17 25 25 C 1.47021 * 110.67994 * 302.44248 * 9 8 7 26 26 C 1.53101 * 109.37585 * 59.10046 * 25 9 8 27 27 H 1.09002 * 109.51689 * 62.55078 * 26 25 9 28 28 C 1.53001 * 109.51712 * 182.66636 * 26 25 9 29 29 O 1.42313 * 110.56732 * 358.71881 * 7 2 1 30 30 H 1.09001 * 109.47726 * 298.92315 * 1 2 3 31 31 H 1.09005 * 109.47062 * 58.92272 * 1 2 3 32 32 H 1.09001 * 109.46976 * 178.91587 * 1 2 3 33 33 H 1.08996 * 110.60488 * 78.78055 * 5 4 2 34 34 H 1.08997 * 110.60360 * 201.59214 * 5 4 2 35 35 H 1.09007 * 110.93092 * 278.45195 * 6 5 4 36 36 H 1.08996 * 110.93378 * 154.79330 * 6 5 4 37 37 H 1.09005 * 109.49474 * 58.15114 * 8 7 2 38 38 H 1.09000 * 109.49618 * 298.05602 * 8 7 2 39 39 H 1.09005 * 109.46926 * 177.49319 * 10 9 8 40 40 H 1.08997 * 109.46927 * 297.49169 * 10 9 8 41 41 H 1.08997 * 109.46991 * 299.99980 * 11 10 9 42 42 H 1.09001 * 109.47428 * 59.99400 * 11 10 9 43 43 H 1.09000 * 109.46959 * 89.99977 * 15 14 12 44 44 H 1.09008 * 109.46475 * 209.99508 * 15 14 12 45 45 H 1.08995 * 109.47341 * 329.98903 * 15 14 12 46 46 H 1.09001 * 109.46527 * 210.00176 * 16 14 12 47 47 H 1.08999 * 109.47553 * 330.00096 * 16 14 12 48 48 H 0.97004 * 120.00454 * 180.02562 * 20 19 17 49 49 H 1.09000 * 109.48259 * 299.13281 * 25 9 8 50 50 H 1.08996 * 109.48666 * 179.07513 * 25 9 8 51 51 H 1.09001 * 109.47469 * 59.88112 * 28 26 25 52 52 H 1.08996 * 109.47330 * 179.89123 * 28 26 25 53 53 H 1.09005 * 109.46877 * 299.88691 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 8 2.0200 -0.7024 -1.1563 5 6 2.2320 -2.0745 -0.7585 6 6 2.8293 -1.9514 0.6676 7 6 2.0529 -0.7454 1.2368 8 6 2.9918 0.1479 2.0401 9 7 3.4413 -0.5738 3.2408 10 6 4.3739 0.2437 4.0281 11 6 3.6985 1.5622 4.4107 12 6 4.6551 2.4006 5.2189 13 8 5.7675 1.9846 5.4643 14 7 4.2746 3.6130 5.6681 15 6 2.9309 4.1156 5.3711 16 6 5.2043 4.4277 6.4542 17 6 6.0108 5.3028 5.5296 18 1 5.8475 5.2563 4.4631 19 6 6.9572 6.1626 6.0453 20 7 7.1557 6.2195 7.3441 21 14 7.9574 7.2468 4.8992 22 1 7.0444 8.1346 4.1353 23 1 8.8990 8.0736 5.6962 24 1 8.7238 6.3944 3.9550 25 6 2.2914 -0.9932 4.0553 26 6 1.3814 -1.8988 3.2212 27 1 1.9255 -2.7996 2.9371 28 6 0.1500 -2.2833 4.0438 29 8 0.9707 -1.1967 2.0433 30 1 -0.3634 0.4970 0.8995 31 1 -0.3633 0.5305 -0.8802 32 1 -0.3633 -1.0275 -0.0194 33 1 1.2869 -2.6168 -0.7330 34 1 2.9361 -2.5644 -1.4310 35 1 3.8982 -1.7414 0.6252 36 1 2.6336 -2.8511 1.2508 37 1 2.4656 1.0553 2.3366 38 1 3.8553 0.4108 1.4290 39 1 4.6557 -0.2958 4.9324 40 1 5.2651 0.4504 3.4357 41 1 3.4166 2.1017 3.5065 42 1 2.8072 1.3555 5.0031 43 1 2.2456 3.8096 6.1615 44 1 2.9549 5.2038 5.3121 45 1 2.5926 3.7076 4.4187 46 1 4.6422 5.0531 7.1479 47 1 5.8746 3.7758 7.0143 48 1 7.8213 6.8248 7.7070 49 1 1.7334 -0.1137 4.3766 50 1 2.6451 -1.5393 4.9298 51 1 -0.3935 -1.3821 4.3275 52 1 -0.4982 -2.9264 3.4486 53 1 0.4646 -2.8156 4.9416 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363939294.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:19 Heat of formation + Delta-G solvation = -138.509359 kcal Electronic energy + Delta-G solvation = -31733.624670 eV Core-core repulsion = 27604.656195 eV Total energy + Delta-G solvation = -4128.968475 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.00146 -40.74435 -39.29317 -37.28441 -36.57678 -34.76394 -34.21221 -32.49021 -32.11833 -31.04046 -29.69306 -28.71333 -27.45924 -26.90315 -25.61248 -24.57086 -23.60147 -22.56973 -21.84840 -20.57862 -19.83285 -18.73395 -18.10463 -17.99664 -17.55565 -17.20280 -17.10805 -16.82469 -16.37456 -16.21329 -15.54040 -15.50694 -15.23477 -15.04969 -14.75446 -14.52510 -14.29605 -14.11345 -13.91666 -13.73487 -13.57268 -13.48862 -13.44685 -13.25661 -13.13431 -13.00446 -12.85129 -12.79103 -12.72189 -12.56564 -12.52391 -12.21811 -12.19407 -12.10958 -11.85966 -11.75618 -11.60988 -11.26845 -10.71130 -10.66802 -10.62659 -10.51209 -9.46198 -9.40970 -8.24992 -6.40344 1.35078 1.39258 1.46640 1.78533 2.27242 2.41040 2.53250 2.70318 2.92189 3.04525 3.46176 3.64145 3.73910 3.77645 3.83057 3.94094 3.98978 4.08150 4.16254 4.23171 4.29286 4.31537 4.35922 4.39685 4.44108 4.48396 4.63753 4.65499 4.68363 4.73609 4.77356 4.79370 4.85517 4.89535 4.90189 4.98718 5.02243 5.07717 5.10188 5.11701 5.16392 5.19428 5.31547 5.39533 5.52353 5.80020 5.81037 5.84506 5.91639 6.02983 6.28925 6.66007 6.74997 7.25233 7.44212 8.81980 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.002599 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.883763 B =10772.056653 C =11533.864809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.083 3.917 3 H 0.104 0.896 4 O -0.388 6.388 5 C 0.045 3.955 6 C -0.163 4.163 7 C 0.099 3.901 8 C 0.028 3.972 9 N -0.527 5.527 10 C 0.082 3.918 11 C -0.156 4.156 12 C 0.498 3.502 13 O -0.596 6.596 14 N -0.612 5.612 15 C 0.080 3.920 16 C 0.259 3.741 17 C -0.545 4.545 18 H 0.053 0.947 19 C 0.008 3.992 20 N -0.929 5.929 21 Si 0.968 3.032 22 H -0.260 1.260 23 H -0.278 1.278 24 H -0.277 1.277 25 C 0.014 3.986 26 C 0.087 3.913 27 H 0.070 0.930 28 C -0.139 4.139 29 O -0.365 6.365 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.023 0.977 47 H -0.002 1.002 48 H 0.268 0.732 49 H 0.049 0.951 50 H 0.093 0.907 51 H 0.061 0.939 52 H 0.069 0.931 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.605 -18.016 -13.000 28.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.025 3.975 3 H 0.122 0.878 4 O -0.308 6.308 5 C -0.031 4.031 6 C -0.201 4.201 7 C 0.059 3.941 8 C -0.100 4.100 9 N -0.249 5.249 10 C -0.047 4.047 11 C -0.197 4.197 12 C 0.286 3.714 13 O -0.477 6.477 14 N -0.343 5.343 15 C -0.062 4.062 16 C 0.137 3.863 17 C -0.584 4.584 18 H 0.071 0.929 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.792 3.208 22 H -0.184 1.184 23 H -0.203 1.203 24 H -0.203 1.203 25 C -0.113 4.113 26 C 0.029 3.971 27 H 0.088 0.912 28 C -0.197 4.197 29 O -0.285 6.285 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.041 0.959 47 H 0.016 0.984 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.111 0.889 51 H 0.081 0.919 52 H 0.088 0.912 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.869 -18.437 -13.128 28.836 hybrid contribution 0.834 1.487 0.551 1.792 sum -17.034 -16.949 -12.577 27.123 Atomic orbital electron populations 1.21878 0.93730 1.02694 1.02255 1.22734 0.95749 0.96280 0.82734 0.87798 1.88952 1.86274 1.22145 1.33420 1.23690 1.00534 0.83510 0.95336 1.23517 1.00894 0.99010 0.96700 1.22261 0.86789 0.93972 0.91078 1.22760 0.98922 0.95721 0.92603 1.62576 1.15794 1.39748 1.06788 1.21802 0.94792 0.90089 0.98012 1.22281 0.99139 0.97540 1.00787 1.21227 0.88167 0.81851 0.80137 1.90643 1.24209 1.72810 1.60076 1.48229 1.15931 1.17229 1.52924 1.21898 0.81641 1.00753 1.01922 1.18746 0.87980 0.88883 0.90662 1.21671 1.21011 1.22088 0.93613 0.92908 1.25872 0.97857 0.98593 0.96822 1.70041 1.35055 1.38826 1.12891 0.85470 0.78490 0.78367 0.78509 1.18429 1.20251 1.20275 1.22990 0.91544 0.99660 0.97144 1.22336 0.95931 0.93945 0.84841 0.91213 1.21734 0.96054 1.02316 0.99554 1.87940 1.30656 1.74565 1.35311 0.90925 0.92028 0.92360 0.91539 0.87673 0.89883 0.88997 0.92879 0.89621 0.90589 0.91403 0.87613 0.87098 0.91154 0.91569 0.89195 0.95945 0.98420 0.92326 0.93285 0.88886 0.91943 0.91205 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.56 71.98 0.62 -1.75 16 2 C 0.08 1.48 3.76 30.79 0.12 1.59 16 3 H 0.10 1.76 7.68 -2.39 -0.02 1.74 16 4 O -0.39 -7.88 11.20 -148.98 -1.67 -9.55 16 5 C 0.05 0.70 7.68 72.70 0.56 1.26 16 6 C -0.16 -2.63 5.98 31.76 0.19 -2.44 16 7 C 0.10 1.72 0.96 -10.33 -0.01 1.71 16 8 C 0.03 0.53 3.52 86.09 0.30 0.84 16 9 N -0.53 -10.69 4.74 -896.15 -4.24 -14.93 16 10 C 0.08 2.13 4.67 86.30 0.40 2.53 16 11 C -0.16 -4.14 3.54 29.85 0.11 -4.04 16 12 C 0.50 20.31 7.67 87.66 0.67 20.98 16 13 O -0.60 -30.57 15.56 -3.03 -0.05 -30.62 16 14 N -0.61 -25.87 2.86 -851.13 -2.43 -28.30 16 15 C 0.08 2.35 10.24 127.77 1.31 3.66 16 16 C 0.26 14.10 5.16 85.63 0.44 14.54 16 17 C -0.55 -31.71 9.39 25.60 0.24 -31.47 16 18 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 19 C 0.01 0.44 5.46 84.65 0.46 0.91 16 20 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 21 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 C 0.01 0.24 4.58 86.31 0.40 0.64 16 26 C 0.09 1.26 3.15 30.63 0.10 1.36 16 27 H 0.07 1.01 6.40 -2.39 -0.02 1.00 16 28 C -0.14 -1.49 9.57 71.98 0.69 -0.80 16 29 O -0.37 -6.21 8.11 -148.98 -1.21 -7.42 16 30 H 0.07 1.12 7.85 -2.39 -0.02 1.10 16 31 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 0.97 7.90 -2.39 -0.02 0.95 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.46 7.77 -2.38 -0.02 1.44 16 36 H 0.09 1.37 6.21 -2.39 -0.01 1.36 16 37 H 0.05 0.98 6.34 -2.38 -0.02 0.97 16 38 H 0.09 1.74 8.04 -2.39 -0.02 1.72 16 39 H 0.08 2.15 8.06 -2.38 -0.02 2.13 16 40 H 0.07 2.05 8.10 -2.39 -0.02 2.03 16 41 H 0.11 2.47 5.65 -2.39 -0.01 2.46 16 42 H 0.11 2.40 6.58 -2.39 -0.02 2.39 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.07 2.07 8.07 -2.38 -0.02 2.05 16 45 H 0.09 2.01 6.44 -2.39 -0.02 1.99 16 46 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 47 H 0.00 -0.15 7.42 -2.39 -0.02 -0.16 16 48 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 49 H 0.05 0.82 6.61 -2.39 -0.02 0.81 16 50 H 0.09 1.47 8.12 -2.39 -0.02 1.45 16 51 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 53 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -74.19 404.94 0.18 -74.01 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.88 Total: 16.47 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.59 Total: 9.51 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -6.39 Total: -99.51 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -2.92 Total: -47.59 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -74.19 0.18 -74.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363939294.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.502 kcal (2) G-P(sol) polarization free energy of solvation -74.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds