Wall clock time and date at job start Sat Apr 11 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 5 5 O 1.21283 * 119.99803 * 119.99700 * 4 2 1 6 6 N 1.34777 * 119.99675 * 300.27576 * 4 2 1 7 7 C 1.46496 * 120.00345 * 359.72090 * 6 4 2 8 8 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 9 9 C 1.50709 * 109.47273 * 89.99834 * 8 6 4 10 10 H 1.07999 * 119.99476 * 359.97438 * 9 8 6 11 11 C 1.37873 * 120.00210 * 179.97438 * 9 8 6 12 12 N 1.31517 * 119.99914 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00074 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.47117 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.47015 * 120.00082 * 13 11 9 16 16 H 1.48507 * 109.47126 * 239.99903 * 13 11 9 17 17 N 1.46904 * 109.46688 * 240.00352 * 2 1 3 18 18 C 1.47017 * 111.00101 * 306.04417 * 17 2 1 19 19 C 1.53094 * 109.29109 * 182.39796 * 18 17 2 20 20 H 1.08995 * 109.50521 * 63.06969 * 19 18 17 21 21 C 1.52999 * 109.50546 * 183.15743 * 19 18 17 22 22 O 1.43036 * 109.24822 * 303.13470 * 19 18 17 23 23 C 1.42934 * 113.72189 * 58.56958 * 22 19 18 24 24 C 1.53109 * 109.48044 * 61.41551 * 23 22 19 25 25 C 1.53188 * 109.03520 * 63.13237 * 24 23 22 26 26 C 1.53101 * 109.14350 * 56.89874 * 25 24 23 27 27 O 1.42896 * 109.44262 * 302.35725 * 26 25 24 28 28 C 1.42923 * 114.09208 * 61.17281 * 27 26 25 29 29 C 1.47036 * 111.00232 * 69.67156 * 17 2 1 30 30 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 31 31 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 32 32 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47115 * 90.00316 * 7 6 4 34 34 H 1.08995 * 109.47364 * 210.00706 * 7 6 4 35 35 H 1.09002 * 109.47090 * 330.00257 * 7 6 4 36 36 H 1.09000 * 109.46889 * 209.99487 * 8 6 4 37 37 H 1.09001 * 109.47460 * 330.00097 * 8 6 4 38 38 H 0.97000 * 120.00447 * 179.97438 * 12 11 9 39 39 H 1.09002 * 109.49916 * 302.34219 * 18 17 2 40 40 H 1.09004 * 109.49701 * 62.41882 * 18 17 2 41 41 H 1.09004 * 109.47244 * 60.00424 * 21 19 18 42 42 H 1.08999 * 109.46916 * 179.97438 * 21 19 18 43 43 H 1.08999 * 109.47620 * 300.00081 * 21 19 18 44 44 H 1.09004 * 109.54136 * 182.99899 * 24 23 22 45 45 H 1.08998 * 109.54217 * 303.17346 * 24 23 22 46 46 H 1.08994 * 109.52832 * 176.79778 * 25 24 23 47 47 H 1.09005 * 109.52487 * 296.93860 * 25 24 23 48 48 H 1.09008 * 109.47213 * 62.34930 * 26 25 24 49 49 H 1.08997 * 109.47855 * 182.35578 * 26 25 24 50 50 H 1.09005 * 109.47820 * 178.97811 * 28 27 26 51 51 H 1.08995 * 109.48374 * 58.94750 * 28 27 26 52 52 H 1.08999 * 109.50134 * 297.64555 * 29 17 2 53 53 H 1.08999 * 109.50963 * 57.77740 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7021 -0.2534 2.4545 7 6 0.8599 0.9377 2.5891 8 6 2.1855 -0.9476 3.6505 9 6 3.5117 -0.3659 4.0676 10 1 3.9508 0.4401 3.4983 11 6 4.1645 -0.8625 5.1758 12 7 3.6301 -1.8443 5.8687 13 14 5.8087 -0.1420 5.6922 14 1 6.1908 0.9427 4.7528 15 1 5.6978 0.4092 7.0668 16 1 6.8450 -1.2054 5.6674 17 7 2.0196 -0.6925 -1.1995 18 6 1.4337 -2.0365 -1.3080 19 6 2.0145 -2.7438 -2.5353 20 1 3.0889 -2.8737 -2.4060 21 6 1.3503 -4.1125 -2.6981 22 8 1.7658 -1.9498 -3.6988 23 6 2.3210 -0.6347 -3.6269 24 6 3.8432 -0.7297 -3.4923 25 6 4.4156 -1.3920 -4.7494 26 6 3.9883 -0.5873 -5.9797 27 8 2.5620 -0.5134 -6.0279 28 6 1.9732 0.1385 -4.9005 29 6 1.7456 0.0945 -2.4110 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.1883 0.6403 2.6175 34 1 1.1144 1.4604 3.5110 35 1 1.0271 1.5988 1.7387 36 1 1.4644 -0.8242 4.4586 37 1 2.3070 -2.0083 3.4308 38 1 4.0895 -2.1940 6.6481 39 1 1.6702 -2.6099 -0.4117 40 1 0.3518 -1.9544 -1.4127 41 1 0.2761 -3.9818 -2.8289 42 1 1.7639 -4.6153 -3.5722 43 1 1.5374 -4.7152 -1.8093 44 1 4.2628 0.2705 -3.3838 45 1 4.0952 -1.3277 -2.6165 46 1 5.5036 -1.4124 -4.6873 47 1 4.0360 -2.4107 -4.8294 48 1 4.4025 0.4191 -5.9175 49 1 4.3576 -1.0771 -6.8807 50 1 0.8905 0.1690 -5.0229 51 1 2.3594 1.1550 -4.8256 52 1 0.6688 0.2118 -2.5329 53 1 2.2114 1.0757 -2.3208 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366573356.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:34 Heat of formation + Delta-G solvation = -128.143488 kcal Electronic energy + Delta-G solvation = -32610.372766 eV Core-core repulsion = 28481.853789 eV Total energy + Delta-G solvation = -4128.518977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.97718 -40.75541 -39.01841 -37.07779 -36.56502 -34.78473 -34.63496 -33.35071 -32.34297 -30.57592 -29.32431 -27.73147 -27.64577 -26.45184 -26.09474 -25.26864 -23.51816 -23.06559 -21.88651 -20.26240 -19.91119 -18.71536 -18.07363 -17.71793 -17.38667 -17.00714 -16.96925 -16.46423 -16.28109 -16.20256 -15.92859 -15.74608 -15.59031 -15.20488 -14.58628 -14.45017 -14.34555 -14.11979 -13.92744 -13.79706 -13.68146 -13.47721 -13.36346 -13.24969 -13.20835 -12.95408 -12.84091 -12.79283 -12.62230 -12.44721 -12.39675 -12.28883 -12.16569 -12.03143 -11.77689 -11.66076 -11.58871 -11.13941 -10.67663 -10.65582 -10.36216 -10.24640 -9.42346 -9.21226 -8.23243 -6.37955 1.34885 1.37602 1.49186 1.87059 2.19016 2.38725 2.54745 2.85429 3.06233 3.07475 3.57521 3.67960 3.75074 3.84591 3.89000 3.99873 4.04846 4.09583 4.10950 4.22753 4.29801 4.36556 4.39746 4.44123 4.49061 4.58031 4.61120 4.62048 4.67235 4.70904 4.74989 4.78141 4.81682 4.90878 4.93286 4.96053 5.00601 5.02510 5.06888 5.16340 5.20371 5.22433 5.30075 5.32805 5.56282 5.81492 5.88531 6.00467 6.05958 6.19181 6.35695 6.70565 6.82054 7.28599 7.53391 8.83746 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.003008 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.360939 B = 9306.754918 C = 9743.643169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.077 3.923 3 H 0.124 0.876 4 C 0.501 3.499 5 O -0.578 6.578 6 N -0.610 5.610 7 C 0.076 3.924 8 C 0.262 3.738 9 C -0.540 4.540 10 H 0.052 0.948 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.267 1.267 15 H -0.268 1.268 16 H -0.283 1.283 17 N -0.526 5.526 18 C 0.028 3.972 19 C 0.094 3.906 20 H 0.048 0.952 21 C -0.137 4.137 22 O -0.369 6.369 23 C 0.087 3.913 24 C -0.139 4.139 25 C -0.149 4.149 26 C 0.060 3.940 27 O -0.392 6.392 28 C 0.080 3.920 29 C 0.032 3.968 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.023 0.977 37 H -0.005 1.005 38 H 0.267 0.733 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.067 0.933 49 H 0.103 0.897 50 H 0.106 0.894 51 H 0.091 0.909 52 H 0.060 0.940 53 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 7.969 -22.295 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.035 4.035 3 H 0.142 0.858 4 C 0.289 3.711 5 O -0.458 6.458 6 N -0.342 5.342 7 C -0.066 4.066 8 C 0.141 3.859 9 C -0.578 4.578 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.191 1.191 15 H -0.193 1.193 16 H -0.209 1.209 17 N -0.251 5.251 18 C -0.100 4.100 19 C 0.036 3.964 20 H 0.066 0.934 21 C -0.195 4.195 22 O -0.289 6.289 23 C 0.047 3.953 24 C -0.176 4.176 25 C -0.187 4.187 26 C -0.016 4.016 27 O -0.310 6.310 28 C 0.003 3.997 29 C -0.096 4.096 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.041 0.959 37 H 0.014 0.986 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.122 0.878 50 H 0.124 0.876 51 H 0.109 0.891 52 H 0.079 0.921 53 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.156 7.166 -22.452 24.359 hybrid contribution 0.517 -0.123 1.541 1.630 sum -5.639 7.043 -20.911 22.774 Atomic orbital electron populations 1.22607 0.93245 1.03042 1.05540 1.21582 0.95734 0.98536 0.87608 0.85817 1.21105 0.80078 0.84737 0.85169 1.90603 1.39530 1.28919 1.86717 1.48119 1.50448 1.29586 1.06016 1.22093 0.94155 0.86594 1.03741 1.18703 0.93678 0.91570 0.81962 1.21731 1.06003 1.18880 1.11218 0.92959 1.25853 1.01750 0.95263 0.96329 1.70056 1.40682 1.27157 1.19003 0.85377 0.78786 0.78282 0.78413 1.19121 1.19328 1.20898 1.61954 1.59096 1.02505 1.01502 1.22818 0.97004 0.90735 0.99467 1.22041 0.98627 0.91634 0.84129 0.93430 1.21690 1.01392 0.93633 1.02775 1.88021 1.77020 1.24791 1.39065 1.22282 0.93245 0.83972 0.95764 1.22028 0.95050 1.02293 0.98271 1.22095 1.01334 1.00052 0.95227 1.22710 0.80583 0.99985 0.98335 1.87943 1.20937 1.79946 1.42201 1.22631 0.99974 0.94523 0.82604 1.22791 1.00473 0.97813 0.88517 0.88786 0.89051 0.93286 0.90802 0.91638 0.88788 0.95941 0.98648 0.92443 0.91294 0.93395 0.91349 0.91072 0.91044 0.89977 0.92573 0.90036 0.92667 0.91523 0.87848 0.87600 0.89074 0.92147 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.89 8.07 71.98 0.58 -3.31 16 2 C 0.08 2.14 1.93 44.17 0.09 2.23 16 3 H 0.12 2.90 7.31 -2.39 -0.02 2.88 16 4 C 0.50 20.64 6.78 87.66 0.59 21.23 16 5 O -0.58 -29.94 13.90 -3.04 -0.04 -29.99 16 6 N -0.61 -25.44 2.86 -851.14 -2.43 -27.88 16 7 C 0.08 2.16 8.80 127.77 1.12 3.29 16 8 C 0.26 14.18 5.16 85.64 0.44 14.63 16 9 C -0.54 -31.28 9.39 25.60 0.24 -31.04 16 10 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 11 C 0.01 0.40 5.46 84.65 0.46 0.86 16 12 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 13 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 17 N -0.53 -14.84 3.85 -874.49 -3.36 -18.21 16 18 C 0.03 0.84 3.94 86.31 0.34 1.18 16 19 C 0.09 2.60 3.03 30.63 0.09 2.70 16 20 H 0.05 1.52 6.43 -2.39 -0.02 1.50 16 21 C -0.14 -3.25 9.57 71.98 0.69 -2.56 16 22 O -0.37 -9.63 9.35 -142.01 -1.33 -10.96 16 23 C 0.09 1.86 0.71 -10.75 -0.01 1.85 16 24 C -0.14 -3.11 4.39 30.69 0.13 -2.97 16 25 C -0.15 -2.94 5.98 30.69 0.18 -2.76 16 26 C 0.06 0.99 6.84 72.02 0.49 1.48 16 27 O -0.39 -8.12 10.70 -142.01 -1.52 -9.64 16 28 C 0.08 1.35 5.81 71.98 0.42 1.77 16 29 C 0.03 0.64 4.09 86.28 0.35 0.99 16 30 H 0.09 1.73 4.51 -2.38 -0.01 1.72 16 31 H 0.09 1.41 6.73 -2.38 -0.02 1.39 16 32 H 0.05 1.19 6.38 -2.38 -0.02 1.18 16 33 H 0.07 1.71 6.94 -2.39 -0.02 1.69 16 34 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 35 H 0.09 1.98 6.02 -2.39 -0.01 1.96 16 36 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 37 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.07 2.64 5.85 -2.39 -0.01 2.63 16 40 H 0.05 1.32 6.36 -2.38 -0.02 1.31 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.06 1.64 6.07 -2.39 -0.01 1.63 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.05 1.30 7.84 -2.38 -0.02 1.28 16 48 H 0.07 0.85 8.14 -2.38 -0.02 0.84 16 49 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 51 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.06 1.06 6.71 -2.39 -0.02 1.04 16 53 H 0.10 1.68 8.09 -2.39 -0.02 1.66 16 Total: -1.00 -77.18 392.95 0.74 -76.43 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.89 Total: 19.69 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 6.22 Total: 9.55 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -5.51 Total: -102.34 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -2.89 Total: -50.58 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -77.18 0.74 -76.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366573356.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.709 kcal (2) G-P(sol) polarization free energy of solvation -77.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds