Wall clock time and date at job start Sat Apr 11 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47557 * 2 1 4 4 C 1.50700 * 109.47426 * 239.99871 * 2 1 3 5 5 O 1.21280 * 120.00139 * 270.53968 * 4 2 1 6 6 N 1.34783 * 120.00016 * 90.54382 * 4 2 1 7 7 C 1.46496 * 119.99745 * 354.76821 * 6 4 2 8 8 C 1.46498 * 119.99896 * 174.77493 * 6 4 2 9 9 C 1.50696 * 109.47492 * 89.99677 * 8 6 4 10 10 H 1.07998 * 120.00000 * 0.02562 * 9 8 6 11 11 C 1.37878 * 119.99905 * 179.97438 * 9 8 6 12 12 N 1.31507 * 119.99988 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99781 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47364 * 59.99722 * 13 11 9 15 15 H 1.48495 * 109.47260 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47015 * 299.99884 * 13 11 9 17 17 N 1.46911 * 109.47139 * 120.00135 * 2 1 3 18 18 C 1.47019 * 110.99927 * 178.29397 * 17 2 1 19 19 C 1.53093 * 109.38448 * 182.81614 * 18 17 2 20 20 H 1.08997 * 109.51863 * 62.56020 * 19 18 17 21 21 C 1.52998 * 109.51794 * 182.68086 * 19 18 17 22 22 O 1.43145 * 109.19446 * 302.64784 * 19 18 17 23 23 C 1.42319 * 113.80558 * 57.54691 * 22 19 18 24 24 C 1.54318 * 110.10913 * 64.97254 * 23 22 19 25 25 C 1.55097 * 101.96870 * 98.26838 * 24 23 22 26 26 O 1.44436 * 103.55499 * 36.61194 * 25 24 23 27 27 C 1.43895 * 106.99700 * 320.26504 * 26 25 24 28 28 H 1.09003 * 109.90655 * 267.00278 * 27 26 25 29 29 C 1.52990 * 110.06349 * 145.82535 * 27 26 25 30 30 C 1.47135 * 110.99591 * 301.82471 * 17 2 1 31 31 H 1.08995 * 109.47613 * 305.70551 * 1 2 3 32 32 H 1.09002 * 109.46855 * 65.71203 * 1 2 3 33 33 H 1.09005 * 109.46950 * 185.70228 * 1 2 3 34 34 H 1.08998 * 109.46860 * 94.49941 * 7 6 4 35 35 H 1.08995 * 109.47161 * 214.49880 * 7 6 4 36 36 H 1.08998 * 109.47308 * 334.49684 * 7 6 4 37 37 H 1.09001 * 109.46817 * 210.00020 * 8 6 4 38 38 H 1.09001 * 109.46857 * 329.99216 * 8 6 4 39 39 H 0.97005 * 119.99595 * 180.02562 * 12 11 9 40 40 H 1.09000 * 109.48426 * 302.78788 * 18 17 2 41 41 H 1.08995 * 109.48772 * 62.84120 * 18 17 2 42 42 H 1.08993 * 109.47238 * 59.99252 * 21 19 18 43 43 H 1.09000 * 109.47284 * 179.97438 * 21 19 18 44 44 H 1.09001 * 109.46572 * 299.99509 * 21 19 18 45 45 H 1.09000 * 110.93280 * 216.43395 * 24 23 22 46 46 H 1.08998 * 110.93348 * 340.10208 * 24 23 22 47 47 H 1.08996 * 110.60663 * 278.09897 * 25 24 23 48 48 H 1.09000 * 110.61132 * 155.13060 * 25 24 23 49 49 H 1.08999 * 109.47147 * 302.26108 * 29 27 26 50 50 H 1.09005 * 109.47286 * 62.25735 * 29 27 26 51 51 H 1.08998 * 109.47527 * 182.25629 * 29 27 26 52 52 H 1.09002 * 109.49684 * 298.65101 * 30 17 2 53 53 H 1.08998 * 109.50285 * 58.75627 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2252 -1.9075 -1.2033 6 7 2.2675 -0.0155 -2.3611 7 6 1.9271 1.4077 -2.4302 8 6 2.8633 -0.6833 -3.5209 9 6 1.7706 -1.2456 -4.3931 10 1 0.7357 -1.1179 -4.1119 11 6 2.0920 -1.9222 -5.5506 12 7 3.3521 -2.0765 -5.8938 13 14 0.7375 -2.6186 -6.6321 14 1 -0.1434 -1.5158 -7.0939 15 1 1.3414 -3.2946 -7.8082 16 1 -0.0625 -3.5984 -5.8541 17 7 2.0197 -0.6926 1.1995 18 6 3.4888 -0.7477 1.2132 19 6 3.9563 -1.5361 2.4394 20 1 3.5925 -2.5614 2.3735 21 6 5.4853 -1.5385 2.4931 22 8 3.4362 -0.9193 3.6218 23 6 2.0168 -0.8180 3.6401 24 6 1.3848 -2.2253 3.6766 25 6 1.0755 -2.4000 5.1863 26 8 0.6745 -1.0771 5.6050 27 6 1.5402 -0.1433 4.9348 28 1 2.3959 0.0899 5.5685 29 6 0.7734 1.1382 4.6028 30 6 1.5125 -0.0511 2.4226 31 1 -0.3634 0.5997 0.8344 32 1 -0.3633 0.4227 -0.9367 33 1 -0.3633 -1.0226 0.1021 34 1 2.8050 2.0038 -2.1810 35 1 1.5955 1.6534 -3.4390 36 1 1.1275 1.6249 -1.7220 37 1 3.4505 0.0357 -4.0922 38 1 3.5100 -1.4925 -3.1815 39 1 3.5782 -2.5522 -6.7084 40 1 3.8426 -1.2404 0.3076 41 1 3.8902 0.2647 1.2571 42 1 5.8481 -0.5130 2.5609 43 1 5.8173 -2.0996 3.3666 44 1 5.8797 -2.0044 1.5900 45 1 0.4696 -2.2567 3.0854 46 1 2.0936 -2.9795 3.3346 47 1 1.9669 -2.7194 5.7261 48 1 0.2624 -3.1113 5.3316 49 1 -0.0912 0.8946 3.9852 50 1 0.4386 1.6109 5.5262 51 1 1.4262 1.8222 4.0605 52 1 1.8683 0.9782 2.4680 53 1 0.4226 -0.0597 2.4130 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369303961.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:03 Heat of formation + Delta-G solvation = -127.191491 kcal Electronic energy + Delta-G solvation = -32642.393468 eV Core-core repulsion = 28513.915772 eV Total energy + Delta-G solvation = -4128.477696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.14866 -40.83075 -39.09498 -37.16401 -36.50828 -34.75175 -34.48348 -32.90102 -32.33683 -31.06714 -29.73651 -28.14235 -27.36495 -26.29478 -26.06170 -25.12301 -23.82193 -22.86379 -21.91769 -20.28104 -19.84385 -18.69547 -18.49175 -17.94384 -17.72467 -17.00660 -16.85248 -16.69477 -16.38271 -16.14502 -16.06083 -15.68147 -15.24512 -14.99153 -14.57922 -14.54471 -14.25505 -13.98482 -13.96066 -13.67564 -13.53816 -13.48121 -13.38959 -13.21465 -13.19677 -13.07420 -12.91002 -12.77954 -12.61907 -12.60065 -12.45244 -12.30247 -12.21630 -12.19798 -12.05619 -11.81834 -11.73187 -11.31123 -10.71420 -10.67728 -10.65297 -10.40395 -9.43648 -9.36160 -8.23293 -6.37854 1.35461 1.39767 1.46946 1.77973 2.15453 2.39173 2.41817 2.72827 2.85757 3.06255 3.41153 3.57569 3.63881 3.78095 3.81808 3.94453 4.01298 4.07600 4.14835 4.17389 4.23069 4.31039 4.35260 4.37048 4.41272 4.53095 4.56788 4.65002 4.65431 4.68037 4.71296 4.77649 4.79785 4.82824 4.90304 4.92331 4.98133 5.00321 5.07665 5.09147 5.18607 5.19470 5.22735 5.28286 5.54501 5.74071 5.76431 5.83460 5.91592 6.05286 6.20868 6.69236 6.78162 7.27950 7.49361 8.83493 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017601 B = 0.002951 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.452309 B = 9485.463565 C = 9797.302513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.077 3.923 3 H 0.083 0.917 4 C 0.502 3.498 5 O -0.575 6.575 6 N -0.612 5.612 7 C 0.076 3.924 8 C 0.264 3.736 9 C -0.541 4.541 10 H 0.052 0.948 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.259 1.259 15 H -0.278 1.278 16 H -0.279 1.279 17 N -0.528 5.528 18 C 0.027 3.973 19 C 0.096 3.904 20 H 0.058 0.942 21 C -0.139 4.139 22 O -0.372 6.372 23 C 0.091 3.909 24 C -0.168 4.168 25 C 0.050 3.950 26 O -0.383 6.383 27 C 0.090 3.910 28 H 0.078 0.922 29 C -0.151 4.151 30 C 0.038 3.962 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.023 0.977 38 H -0.005 1.005 39 H 0.267 0.733 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.109 0.891 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.084 0.916 52 H 0.062 0.938 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 9.258 22.158 24.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.034 4.034 3 H 0.100 0.900 4 C 0.290 3.710 5 O -0.454 6.454 6 N -0.344 5.344 7 C -0.067 4.067 8 C 0.143 3.857 9 C -0.580 4.580 10 H 0.071 0.929 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.790 3.210 14 H -0.184 1.184 15 H -0.203 1.203 16 H -0.204 1.204 17 N -0.254 5.254 18 C -0.101 4.101 19 C 0.039 3.961 20 H 0.076 0.924 21 C -0.196 4.196 22 O -0.292 6.292 23 C 0.050 3.950 24 C -0.206 4.206 25 C -0.027 4.027 26 O -0.303 6.303 27 C 0.032 3.968 28 H 0.096 0.904 29 C -0.208 4.208 30 C -0.089 4.089 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.041 0.959 38 H 0.013 0.987 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.127 0.873 49 H 0.091 0.909 50 H 0.093 0.907 51 H 0.103 0.897 52 H 0.080 0.920 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.820 8.231 22.284 24.060 hybrid contribution 0.248 -0.279 -1.564 1.608 sum -3.573 7.952 20.719 22.479 Atomic orbital electron populations 1.21811 0.90378 1.03261 1.03973 1.21638 0.98457 0.95899 0.87383 0.89967 1.21039 0.77686 0.87317 0.84974 1.90642 1.53120 1.16820 1.84843 1.48207 1.61276 1.11618 1.13348 1.21964 1.01416 0.79459 1.03813 1.18692 0.92871 0.91665 0.82502 1.21660 0.93386 1.36064 1.06877 0.92947 1.25845 0.98066 0.96063 0.99146 1.70038 1.18509 1.42796 1.25508 0.85496 0.78929 0.78830 0.77744 1.18368 1.20333 1.20439 1.61939 1.08672 1.53517 1.01238 1.22747 0.88065 0.99757 0.99544 1.22136 0.95548 0.95548 0.82916 0.92405 1.21723 0.91100 1.03547 1.03278 1.87865 1.19738 1.81156 1.40408 1.22489 0.81500 0.95366 0.95602 1.23528 1.02240 0.97053 0.97742 1.23641 1.01135 0.85223 0.92655 1.88915 1.57032 1.16240 1.68095 1.22555 0.93343 0.90638 0.90248 0.90411 1.22046 1.00969 0.94544 1.03237 1.22967 1.02030 0.96464 0.87475 0.88083 0.91034 0.92807 0.91471 0.91390 0.88795 0.95926 0.98697 0.92409 0.92141 0.93536 0.91216 0.90438 0.90853 0.89671 0.90532 0.91709 0.87319 0.90907 0.90700 0.89724 0.91977 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.44 71.98 0.61 -2.60 16 2 C 0.08 2.20 1.61 44.17 0.07 2.27 16 3 H 0.08 1.91 6.77 -2.39 -0.02 1.89 16 4 C 0.50 20.77 5.68 87.66 0.50 21.27 16 5 O -0.58 -30.03 15.27 -3.03 -0.05 -30.08 16 6 N -0.61 -25.81 2.86 -851.15 -2.43 -28.24 16 7 C 0.08 2.22 9.87 127.77 1.26 3.48 16 8 C 0.26 14.28 5.14 85.63 0.44 14.72 16 9 C -0.54 -31.35 9.39 25.60 0.24 -31.11 16 10 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 11 C 0.01 0.45 5.46 84.66 0.46 0.91 16 12 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 13 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 14 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 N -0.53 -14.66 4.13 -875.29 -3.62 -18.27 16 18 C 0.03 0.79 4.57 86.31 0.39 1.19 16 19 C 0.10 2.46 3.15 30.62 0.10 2.56 16 20 H 0.06 1.64 6.40 -2.39 -0.02 1.63 16 21 C -0.14 -2.95 9.57 71.98 0.69 -2.26 16 22 O -0.37 -8.95 9.87 -148.98 -1.47 -10.42 16 23 C 0.09 1.92 0.99 -10.33 -0.01 1.91 16 24 C -0.17 -3.65 5.98 31.76 0.19 -3.46 16 25 C 0.05 0.92 7.73 72.70 0.56 1.49 16 26 O -0.38 -8.02 11.21 -148.98 -1.67 -9.69 16 27 C 0.09 1.68 3.87 30.78 0.12 1.80 16 28 H 0.08 1.49 7.96 -2.39 -0.02 1.47 16 29 C -0.15 -2.03 8.40 71.98 0.60 -1.42 16 30 C 0.04 0.77 2.64 86.08 0.23 0.99 16 31 H 0.10 1.57 6.67 -2.39 -0.02 1.56 16 32 H 0.07 1.65 7.22 -2.39 -0.02 1.63 16 33 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 2.09 8.11 -2.39 -0.02 2.07 16 36 H 0.09 2.07 5.39 -2.39 -0.01 2.06 16 37 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 38 H -0.01 -0.32 7.50 -2.39 -0.02 -0.34 16 39 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 40 H 0.06 2.23 6.29 -2.39 -0.02 2.22 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.08 1.93 7.77 -2.39 -0.02 1.91 16 46 H 0.08 1.86 6.21 -2.39 -0.01 1.84 16 47 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.07 0.92 6.75 -2.39 -0.02 0.91 16 50 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 51 H 0.08 0.96 6.79 -2.39 -0.02 0.94 16 52 H 0.06 1.10 6.58 -2.39 -0.02 1.08 16 53 H 0.11 1.92 5.05 -2.39 -0.01 1.91 16 Total: -1.00 -75.39 398.90 0.42 -74.97 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.89 Total: 19.02 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 6.45 Total: 11.72 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -5.76 Total: -102.63 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -3.19 Total: -50.19 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -75.39 0.42 -74.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369303961.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.223 kcal (2) G-P(sol) polarization free energy of solvation -75.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds