Wall clock time and date at job start Sat Apr 11 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46949 * 2 1 4 4 C 1.50697 * 109.46942 * 240.00714 * 2 1 3 5 5 O 1.21287 * 119.99903 * 262.12596 * 4 2 1 6 6 N 1.34777 * 120.00443 * 82.12919 * 4 2 1 7 7 C 1.46501 * 119.99884 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00234 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.46879 * 269.99683 * 8 6 4 10 10 H 1.08006 * 119.99971 * 359.97438 * 9 8 6 11 11 C 1.37875 * 120.00079 * 179.72446 * 9 8 6 12 12 N 1.31513 * 119.99883 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00053 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47377 * 89.99803 * 13 11 9 15 15 H 1.48501 * 109.47061 * 210.00238 * 13 11 9 16 16 H 1.48506 * 109.46997 * 329.99504 * 13 11 9 17 17 N 1.46893 * 109.47266 * 120.00535 * 2 1 3 18 18 C 1.47014 * 110.99906 * 183.84867 * 17 2 1 19 19 C 1.53096 * 109.37705 * 182.81157 * 18 17 2 20 20 H 1.09002 * 109.51687 * 62.58858 * 19 18 17 21 21 C 1.52999 * 109.52009 * 182.74807 * 19 18 17 22 22 O 1.43141 * 109.21153 * 302.67151 * 19 18 17 23 23 C 1.42321 * 113.80650 * 57.54157 * 22 19 18 24 24 C 1.54284 * 110.17034 * 180.99349 * 23 22 19 25 25 C 1.55117 * 101.97281 * 261.71073 * 24 23 22 26 26 O 1.44430 * 103.55615 * 323.41089 * 25 24 23 27 27 C 1.43885 * 106.99391 * 39.74331 * 26 25 24 28 28 H 1.08995 * 109.90805 * 92.96584 * 27 26 25 29 29 C 1.53000 * 109.90623 * 214.22910 * 27 26 25 30 30 C 1.47134 * 110.99882 * 307.39112 * 17 2 1 31 31 H 1.08995 * 109.47000 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46917 * 299.99793 * 1 2 3 33 33 H 1.08999 * 109.47285 * 59.98987 * 1 2 3 34 34 H 1.08997 * 109.47240 * 270.00642 * 7 6 4 35 35 H 1.09002 * 109.46774 * 30.00378 * 7 6 4 36 36 H 1.09000 * 109.46979 * 149.99717 * 7 6 4 37 37 H 1.08995 * 109.47357 * 149.99906 * 8 6 4 38 38 H 1.09000 * 109.47055 * 29.99465 * 8 6 4 39 39 H 0.97001 * 119.99950 * 180.02562 * 12 11 9 40 40 H 1.08996 * 109.48682 * 302.78440 * 18 17 2 41 41 H 1.09004 * 109.48981 * 62.82550 * 18 17 2 42 42 H 1.09000 * 109.46980 * 59.99905 * 21 19 18 43 43 H 1.09001 * 109.47494 * 180.02562 * 21 19 18 44 44 H 1.09008 * 109.47220 * 300.00370 * 21 19 18 45 45 H 1.08998 * 110.93556 * 19.87657 * 24 23 22 46 46 H 1.08998 * 110.93036 * 143.54489 * 24 23 22 47 47 H 1.08998 * 110.60667 * 204.88896 * 25 24 23 48 48 H 1.09002 * 110.73480 * 81.99108 * 25 24 23 49 49 H 1.09002 * 109.47229 * 177.63867 * 29 27 26 50 50 H 1.09004 * 109.47465 * 297.63957 * 29 27 26 51 51 H 1.09003 * 109.47350 * 57.63765 * 29 27 26 52 52 H 1.09001 * 109.50253 * 298.63170 * 30 17 2 53 53 H 1.08998 * 109.49794 * 58.73962 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 8 2.3701 -1.8732 -1.1640 6 7 2.1063 -0.0532 -2.4050 7 6 1.6978 1.3514 -2.4854 8 6 2.5940 -0.7439 -3.6013 9 6 4.0885 -0.5781 -3.7028 10 1 4.6215 -0.0143 -2.9515 11 6 4.7759 -1.1506 -4.7519 12 7 6.0800 -1.0054 -4.8407 13 14 3.8549 -2.1310 -6.0479 14 1 3.4308 -1.2250 -7.1454 15 1 4.7440 -3.1876 -6.5939 16 1 2.6575 -2.7600 -5.4346 17 7 2.0197 -0.6926 1.1993 18 6 3.4864 -0.6329 1.2802 19 6 3.9603 -1.4237 2.5024 20 1 3.6832 -2.4716 2.3881 21 6 5.4806 -1.3069 2.6288 22 8 3.3405 -0.8907 3.6775 23 6 1.9181 -0.9018 3.6321 24 6 1.3398 -0.2889 4.9244 25 6 1.0065 -1.5531 5.7591 26 8 0.5474 -2.5004 4.7701 27 6 1.3909 -2.3443 3.6149 28 1 2.2243 -3.0449 3.6666 29 6 0.5795 -2.5873 2.3408 30 6 1.4091 -0.1351 2.4163 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5140 -0.8899 34 1 0.6369 1.4079 -2.7290 35 1 1.8768 1.8373 -1.5263 36 1 2.2760 1.8541 -3.2608 37 1 2.1204 -0.3175 -4.4855 38 1 2.3498 -1.8040 -3.5338 39 1 6.5636 -1.4079 -5.5790 40 1 3.9182 -1.0652 0.3776 41 1 3.8035 0.4058 1.3735 42 1 5.7561 -0.2588 2.7456 43 1 5.8173 -1.8705 3.4990 44 1 5.9517 -1.7086 1.7316 45 1 2.0836 0.3267 5.4303 46 1 0.4386 0.2868 4.7130 47 1 0.2181 -1.3395 6.4808 48 1 1.8966 -1.9275 6.2647 49 1 1.2143 -2.4264 1.4695 50 1 0.2089 -3.6124 2.3359 51 1 -0.2630 -1.8963 2.3091 52 1 1.6793 0.9167 2.5101 53 1 0.3248 -0.2287 2.3550 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369303963.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:09 Heat of formation + Delta-G solvation = -112.325972 kcal Electronic energy + Delta-G solvation = -33142.529770 eV Core-core repulsion = 29014.696692 eV Total energy + Delta-G solvation = -4127.833078 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.27865 -40.80096 -39.01523 -37.26774 -36.52693 -34.72674 -34.39575 -32.88619 -32.25619 -31.09115 -30.19600 -28.21489 -27.40049 -26.35034 -26.03901 -24.71946 -23.43876 -22.64684 -22.35827 -20.44587 -19.77326 -19.14035 -18.48588 -18.06522 -17.73139 -16.97957 -16.88213 -16.44017 -16.32642 -16.25781 -15.79181 -15.58050 -15.24111 -15.11041 -14.85313 -14.60080 -14.41506 -13.97277 -13.80562 -13.65667 -13.58038 -13.54701 -13.29995 -13.27066 -13.10224 -13.02292 -12.92187 -12.73474 -12.59869 -12.49852 -12.38848 -12.33071 -12.11163 -12.02354 -12.01585 -11.93667 -11.76364 -11.27171 -10.82782 -10.81538 -10.59972 -10.39114 -9.37512 -9.21750 -8.34792 -6.39494 1.30914 1.35804 1.46237 1.78881 2.17370 2.30475 2.44781 2.71228 2.98083 2.99744 3.43682 3.55347 3.63620 3.67761 3.80765 3.92914 3.96663 4.05997 4.16193 4.19333 4.25723 4.32941 4.39743 4.42008 4.48795 4.55822 4.58880 4.63387 4.68265 4.72846 4.76929 4.80306 4.83269 4.86466 4.87126 4.93146 4.93373 4.99083 5.02812 5.06639 5.14994 5.17355 5.24609 5.45670 5.59670 5.68062 5.73010 5.82646 5.96165 6.17013 6.23714 6.61437 6.72353 7.21832 7.46842 8.82054 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.003341 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.322928 B = 8378.531935 C = 8941.817229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 H 0.079 0.921 4 C 0.504 3.496 5 O -0.572 6.572 6 N -0.608 5.608 7 C 0.075 3.925 8 C 0.226 3.774 9 C -0.533 4.533 10 H 0.027 0.973 11 C 0.012 3.988 12 N -0.945 5.945 13 Si 0.947 3.053 14 H -0.251 1.251 15 H -0.283 1.283 16 H -0.256 1.256 17 N -0.515 5.515 18 C 0.028 3.972 19 C 0.096 3.904 20 H 0.054 0.946 21 C -0.140 4.140 22 O -0.370 6.370 23 C 0.088 3.912 24 C -0.133 4.133 25 C 0.042 3.958 26 O -0.392 6.392 27 C 0.064 3.936 28 H 0.049 0.951 29 C -0.159 4.159 30 C 0.034 3.966 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.019 0.981 39 H 0.268 0.732 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.101 0.899 46 H 0.114 0.886 47 H 0.119 0.881 48 H 0.058 0.942 49 H 0.106 0.894 50 H 0.036 0.964 51 H 0.070 0.930 52 H 0.059 0.941 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.389 6.808 18.907 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.040 4.040 3 H 0.096 0.904 4 C 0.291 3.709 5 O -0.451 6.451 6 N -0.340 5.340 7 C -0.067 4.067 8 C 0.103 3.897 9 C -0.572 4.572 10 H 0.046 0.954 11 C -0.186 4.186 12 N -0.585 5.585 13 Si 0.769 3.231 14 H -0.175 1.175 15 H -0.209 1.209 16 H -0.180 1.180 17 N -0.240 5.240 18 C -0.101 4.101 19 C 0.039 3.961 20 H 0.072 0.928 21 C -0.197 4.197 22 O -0.289 6.289 23 C 0.048 3.952 24 C -0.171 4.171 25 C -0.034 4.034 26 O -0.312 6.312 27 C 0.006 3.994 28 H 0.067 0.933 29 C -0.216 4.216 30 C -0.092 4.092 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.120 0.880 46 H 0.132 0.868 47 H 0.137 0.863 48 H 0.077 0.923 49 H 0.124 0.876 50 H 0.055 0.945 51 H 0.089 0.911 52 H 0.077 0.923 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.274 5.614 18.944 24.375 hybrid contribution 1.089 0.043 -1.189 1.613 sum -13.185 5.657 17.755 22.827 Atomic orbital electron populations 1.21896 0.89361 1.03626 1.04733 1.21700 0.99008 0.95761 0.87532 0.90366 1.21001 0.77841 0.87020 0.84989 1.90641 1.50084 1.19088 1.85294 1.47947 1.63393 1.13361 1.09290 1.22026 1.01040 0.80019 1.03629 1.19292 0.92778 0.93192 0.84415 1.21535 0.92680 1.33582 1.09390 0.95427 1.25828 0.95599 0.96800 1.00400 1.70048 1.08801 1.46522 1.33139 0.85728 0.79043 0.79075 0.79221 1.17516 1.20915 1.18035 1.62223 1.05531 1.54562 1.01671 1.22718 0.88727 0.99310 0.99303 1.22062 0.94307 0.96334 0.83443 0.92755 1.21714 0.91496 1.03464 1.03049 1.87905 1.18306 1.83612 1.39126 1.22583 0.81364 0.94582 0.96661 1.23115 1.02528 0.98613 0.92822 1.23756 1.00726 0.87176 0.91732 1.88916 1.55899 1.60638 1.25721 1.23103 0.93082 0.95820 0.87398 0.93321 1.22419 1.01362 1.00599 0.97258 1.22882 1.01872 0.96948 0.87538 0.92149 0.88383 0.89869 0.89826 0.89787 0.91637 0.93464 0.96317 0.92324 0.92297 0.93855 0.91278 0.90371 0.91388 0.88016 0.86808 0.86304 0.92337 0.87620 0.94457 0.91122 0.92322 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.64 71.98 0.62 -2.01 16 2 C 0.07 1.90 1.76 44.17 0.08 1.98 16 3 H 0.08 1.85 6.20 -2.38 -0.01 1.83 16 4 C 0.50 19.67 6.02 87.66 0.53 20.20 16 5 O -0.57 -28.13 15.06 -3.05 -0.05 -28.18 16 6 N -0.61 -23.86 2.86 -851.13 -2.43 -26.29 16 7 C 0.07 2.02 9.69 127.77 1.24 3.26 16 8 C 0.23 10.86 4.23 85.63 0.36 11.23 16 9 C -0.53 -31.13 9.94 25.60 0.25 -30.88 16 10 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 11 C 0.01 0.69 5.47 84.65 0.46 1.15 16 12 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 13 Si 0.95 44.38 27.47 68.60 1.88 46.26 16 14 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 15 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 16 H -0.26 -11.63 6.53 99.48 0.65 -10.98 16 17 N -0.51 -14.03 1.35 -875.30 -1.18 -15.21 16 18 C 0.03 0.87 4.61 86.31 0.40 1.27 16 19 C 0.10 2.73 3.13 30.63 0.10 2.83 16 20 H 0.05 1.72 6.85 -2.39 -0.02 1.70 16 21 C -0.14 -3.53 9.57 71.98 0.69 -2.84 16 22 O -0.37 -9.46 9.85 -148.98 -1.47 -10.92 16 23 C 0.09 1.91 0.97 -10.33 -0.01 1.90 16 24 C -0.13 -1.98 6.43 31.76 0.20 -1.78 16 25 C 0.04 0.70 7.73 72.71 0.56 1.26 16 26 O -0.39 -9.48 11.20 -148.98 -1.67 -11.15 16 27 C 0.06 1.62 3.28 30.79 0.10 1.72 16 28 H 0.05 1.43 6.89 -2.39 -0.02 1.41 16 29 C -0.16 -4.18 8.32 71.98 0.60 -3.58 16 30 C 0.03 0.69 3.02 86.09 0.26 0.95 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.23 6.29 -2.39 -0.02 1.22 16 33 H 0.08 1.36 7.23 -2.39 -0.02 1.34 16 34 H 0.08 1.67 7.80 -2.39 -0.02 1.65 16 35 H 0.08 1.83 5.90 -2.39 -0.01 1.81 16 36 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 37 H 0.05 2.06 7.51 -2.39 -0.02 2.04 16 38 H 0.02 0.99 6.46 -2.39 -0.02 0.97 16 39 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 40 H 0.06 2.39 6.44 -2.39 -0.02 2.38 16 41 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 45 H 0.10 1.37 8.07 -2.39 -0.02 1.35 16 46 H 0.11 1.18 7.84 -2.39 -0.02 1.16 16 47 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.11 3.33 5.42 -2.39 -0.01 3.31 16 50 H 0.04 1.01 8.14 -2.38 -0.02 1.00 16 51 H 0.07 1.56 6.50 -2.39 -0.02 1.55 16 52 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.12 1.92 4.33 -2.39 -0.01 1.91 16 Total: -1.00 -77.96 392.74 2.67 -75.29 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.84 Total: 22.80 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 6.44 Total: 6.65 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -3.31 Total: -100.75 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -3.18 Total: -50.25 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Total: -77.96 2.67 -75.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369303963.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.040 kcal (2) G-P(sol) polarization free energy of solvation -77.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds