Wall clock time and date at job start Sat Apr 11 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34230 * 116.99715 * 2 1 4 4 O 1.20819 * 120.00131 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99432 * 179.97438 * 3 2 1 6 6 C 1.52999 * 110.30564 * 60.72749 * 5 3 2 7 7 C 1.54386 * 110.34690 * 298.54734 * 5 3 2 8 8 N 1.48149 * 104.62165 * 217.15778 * 7 5 3 9 9 C 1.34775 * 127.83834 * 219.59011 * 8 7 5 10 10 O 1.21583 * 120.00144 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99585 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72218 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52998 * 109.46876 * 299.99984 * 13 12 11 15 15 C 1.53005 * 109.46795 * 60.00011 * 13 12 11 16 16 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 17 17 C 1.50703 * 109.46940 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00043 * 0.02562 * 17 16 13 19 19 C 1.37875 * 120.00213 * 180.02562 * 17 16 13 20 20 N 1.31512 * 120.00116 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00201 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47135 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47080 * 119.99899 * 21 19 17 24 24 H 1.48502 * 109.47342 * 239.99982 * 21 19 17 25 25 C 1.48151 * 104.31926 * 39.84529 * 8 7 5 26 26 C 1.54285 * 110.43152 * 182.95813 * 5 3 2 27 27 H 1.09000 * 110.34249 * 359.94111 * 26 5 3 28 28 C 1.52996 * 110.34603 * 237.78975 * 26 5 3 29 29 H 1.08994 * 109.46984 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46973 * 300.00152 * 1 2 3 31 31 H 1.09007 * 109.47007 * 59.99938 * 1 2 3 32 32 H 1.08998 * 109.47148 * 299.27675 * 6 5 3 33 33 H 1.09000 * 109.47405 * 59.27169 * 6 5 3 34 34 H 1.09001 * 109.47546 * 179.27241 * 6 5 3 35 35 H 1.09002 * 110.40468 * 98.37753 * 7 5 3 36 36 H 1.08994 * 110.50745 * 335.99515 * 7 5 3 37 37 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 38 38 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 39 39 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 40 40 H 1.08996 * 109.47009 * 60.00253 * 14 13 12 41 41 H 1.09004 * 109.46783 * 179.97438 * 14 13 12 42 42 H 1.08998 * 109.47156 * 300.00070 * 14 13 12 43 43 H 1.09000 * 109.47011 * 60.00556 * 15 13 12 44 44 H 1.09004 * 109.46658 * 180.02562 * 15 13 12 45 45 H 1.08996 * 109.47069 * 299.99740 * 15 13 12 46 46 H 1.08995 * 109.47672 * 299.99669 * 16 13 12 47 47 H 1.09007 * 109.47288 * 60.00489 * 16 13 12 48 48 H 0.97000 * 120.00572 * 179.97438 * 20 19 17 49 49 H 1.08997 * 110.40662 * 78.94268 * 25 8 7 50 50 H 1.09004 * 110.40461 * 201.36987 * 25 8 7 51 51 H 1.09006 * 109.47159 * 59.99866 * 28 26 5 52 52 H 1.09002 * 109.47274 * 179.97438 * 28 26 5 53 53 H 1.08999 * 109.47441 * 299.99796 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1337 0.6017 -1.2507 7 6 4.1380 0.6123 1.2725 8 7 5.2965 1.4570 1.6456 9 6 6.4947 1.0564 2.1151 10 8 6.7195 -0.1275 2.2764 11 7 7.4436 1.9683 2.4057 12 6 8.7438 1.5332 2.9218 13 6 9.6277 2.7564 3.1739 14 6 9.8286 3.5193 1.8630 15 6 8.9526 3.6710 4.1980 16 6 10.9854 2.3021 3.7134 17 6 11.8562 3.5069 3.9611 18 1 11.4788 4.4975 3.7548 19 6 13.1346 3.3444 4.4512 20 7 13.5944 2.1381 4.7020 21 14 14.2138 4.8378 4.7589 22 1 13.4674 6.0704 4.3996 23 1 14.5907 4.8888 6.1944 24 1 15.4408 4.7416 3.9280 25 6 4.8369 2.8423 1.3916 26 6 4.0286 2.7449 0.0751 27 1 3.1671 3.4117 0.1103 28 6 4.9147 3.0853 -1.1248 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.8430 -0.4488 -1.2617 33 1 3.7413 1.0965 -2.1392 34 1 5.2210 0.6777 -1.2429 35 1 4.4635 -0.4055 1.0574 36 1 3.3951 0.6124 2.0700 37 1 7.2642 2.9129 2.2774 38 1 8.6008 0.9897 3.8558 39 1 9.2248 0.8816 2.1923 40 1 8.8612 3.8430 1.4791 41 1 10.4580 4.3910 2.0427 42 1 10.3095 2.8677 1.1334 43 1 8.8096 3.1275 5.1319 44 1 9.5821 4.5427 4.3772 45 1 7.9853 3.9947 3.8140 46 1 10.8420 1.7589 4.6474 47 1 11.4666 1.6503 2.9842 48 1 14.4940 2.0237 5.0464 49 1 4.2005 3.1871 2.2066 50 1 5.6902 3.5089 1.2665 51 1 4.3518 2.9360 -2.0462 52 1 5.2325 4.1258 -1.0582 53 1 5.7908 2.4368 -1.1251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377019905.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:12 Heat of formation + Delta-G solvation = -122.422823 kcal Electronic energy + Delta-G solvation = -31187.493756 eV Core-core repulsion = 27059.222846 eV Total energy + Delta-G solvation = -4128.270911 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.53853 -40.06834 -38.52566 -37.07201 -36.70806 -33.87141 -33.29600 -32.03259 -31.57953 -28.23968 -27.88681 -27.02652 -26.51273 -26.27954 -25.74705 -24.08631 -22.64667 -22.15184 -19.98090 -19.37902 -18.82744 -17.96831 -17.61209 -17.04513 -16.76817 -16.32440 -15.77721 -15.73197 -14.76521 -14.70511 -14.55326 -14.38950 -13.99520 -13.93608 -13.69795 -13.53300 -13.29801 -13.08690 -12.90766 -12.76638 -12.67804 -12.42149 -12.20974 -12.08435 -12.06738 -11.92348 -11.40834 -11.22371 -11.15506 -11.09061 -11.04703 -11.02561 -10.83531 -10.73676 -10.64599 -10.39787 -10.23711 -10.03979 -9.87794 -9.20810 -9.01367 -8.91608 -8.51526 -8.36102 -5.99876 -4.01085 1.73479 2.18363 2.63267 3.30046 3.31516 3.38237 3.40447 3.83782 3.98624 4.19163 4.29437 4.45492 4.48671 4.68677 4.69169 4.76283 4.82268 5.06588 5.10053 5.17654 5.24844 5.34219 5.35693 5.37612 5.40601 5.45889 5.51673 5.64417 5.65311 5.68236 5.71064 5.75163 5.91090 5.96770 6.07526 6.17464 6.23279 6.28785 6.41175 6.59265 6.62977 6.79526 7.06097 7.07521 7.07827 7.14587 7.29484 7.64835 7.76953 7.98839 8.09037 8.40670 8.73540 9.03932 9.62015 11.11559 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.002129 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.757958 B =13146.628700 C =13492.505554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.352 6.352 3 C 0.478 3.522 4 O -0.502 6.502 5 C -0.066 4.066 6 C -0.137 4.137 7 C 0.143 3.857 8 N -0.643 5.643 9 C 0.726 3.274 10 O -0.588 6.588 11 N -0.733 5.733 12 C 0.147 3.853 13 C -0.072 4.072 14 C -0.126 4.126 15 C -0.126 4.126 16 C 0.036 3.964 17 C -0.510 4.510 18 H 0.060 0.940 19 C 0.055 3.945 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.104 3.896 26 C -0.096 4.096 27 H 0.108 0.892 28 C -0.145 4.145 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.394 0.606 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.027 0.973 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.027 0.973 46 H 0.019 0.981 47 H 0.019 0.981 48 H 0.259 0.741 49 H 0.074 0.926 50 H 0.083 0.917 51 H 0.061 0.939 52 H 0.062 0.938 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.578 -0.424 -12.090 28.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.268 6.268 3 C 0.320 3.680 4 O -0.389 6.389 5 C -0.068 4.068 6 C -0.194 4.194 7 C 0.019 3.981 8 N -0.382 5.382 9 C 0.428 3.572 10 O -0.466 6.466 11 N -0.388 5.388 12 C 0.023 3.977 13 C -0.073 4.073 14 C -0.183 4.183 15 C -0.184 4.184 16 C -0.001 4.001 17 C -0.548 4.548 18 H 0.078 0.922 19 C -0.146 4.146 20 N -0.533 5.533 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 C -0.019 4.019 26 C -0.115 4.115 27 H 0.126 0.874 28 C -0.202 4.202 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.229 0.771 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.046 0.954 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.101 0.899 51 H 0.080 0.920 52 H 0.081 0.919 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.321 -1.150 -11.838 27.976 hybrid contribution 0.277 1.313 0.202 1.357 sum -25.045 0.163 -11.636 27.616 Atomic orbital electron populations 1.23319 0.76108 1.03944 1.02614 1.86534 1.23530 1.33033 1.83742 1.23397 0.91397 0.81419 0.71786 1.90645 1.66745 1.36331 1.45155 1.21498 0.86915 0.98900 0.99504 1.21952 1.02518 1.00606 0.94371 1.21986 0.87099 0.96044 0.92992 1.47952 1.12628 1.07576 1.70051 1.15382 0.78604 0.85214 0.78005 1.90931 1.79733 1.15474 1.60433 1.45379 1.14761 1.08805 1.69904 1.21524 0.80180 0.97452 0.98498 1.20916 0.97534 0.93208 0.95598 1.21748 0.99055 1.01055 0.96434 1.21756 0.97799 1.00439 0.98364 1.19093 0.88222 0.96729 0.96106 1.21216 0.97978 0.92985 1.42646 0.92212 1.25021 0.98133 0.95551 0.95882 1.69974 1.17197 1.20892 1.45265 0.86592 0.80659 0.83253 0.77796 1.19817 1.21163 1.21155 1.22542 0.98610 0.84522 0.96257 1.22314 0.99824 0.93596 0.95810 0.87358 1.21946 0.99583 1.01956 0.96746 0.87871 0.91757 0.91839 0.91130 0.91596 0.90065 0.88276 0.91153 0.77094 0.91945 0.91917 0.95421 0.91458 0.93327 0.93331 0.91446 0.95407 0.96290 0.96282 0.93101 0.90775 0.89885 0.91982 0.91863 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.35 -2.95 10.50 -39.26 -0.41 -3.36 16 3 C 0.48 4.46 6.47 36.01 0.23 4.69 16 4 O -0.50 -5.66 15.02 -18.74 -0.28 -5.94 16 5 C -0.07 -0.56 0.97 -154.26 -0.15 -0.71 16 6 C -0.14 -1.03 7.21 37.16 0.27 -0.76 16 7 C 0.14 1.46 6.10 -2.41 -0.01 1.45 16 8 N -0.64 -7.54 3.31 -174.76 -0.58 -8.12 16 9 C 0.73 11.33 8.57 -86.92 -0.74 10.59 16 10 O -0.59 -11.57 16.61 5.29 0.09 -11.48 16 11 N -0.73 -10.87 4.94 -65.22 -0.32 -11.19 16 12 C 0.15 2.61 4.56 -4.04 -0.02 2.59 16 13 C -0.07 -1.35 0.54 -154.51 -0.08 -1.44 16 14 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 15 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 16 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 17 C -0.51 -13.43 7.65 -34.44 -0.26 -13.69 16 18 H 0.06 1.51 5.68 -52.49 -0.30 1.22 16 19 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.10 0.92 6.49 -2.19 -0.01 0.90 16 26 C -0.10 -0.77 3.25 -89.01 -0.29 -1.06 16 27 H 0.11 0.92 6.48 -51.93 -0.34 0.59 16 28 C -0.15 -1.04 7.94 37.16 0.30 -0.75 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.43 6.98 -51.93 -0.36 0.07 16 34 H 0.08 0.67 6.61 -51.93 -0.34 0.33 16 35 H 0.10 1.10 7.60 -51.93 -0.39 0.70 16 36 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 37 H 0.39 4.99 4.56 -40.82 -0.19 4.80 16 38 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 41 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 45 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.08 0.66 6.59 -51.93 -0.34 0.32 16 51 H 0.06 0.40 6.89 -51.93 -0.36 0.05 16 52 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 53 H 0.06 0.52 6.72 -51.93 -0.35 0.18 16 LS Contribution 409.35 15.07 6.17 6.17 Total: -1.00 -32.75 409.35 -7.93 -40.68 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.99 Total: 1.22 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 0.67 Total: 1.50 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.16 Total: -44.87 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.61 Total: -20.79 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.75 -7.93 -40.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377019905.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.742 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds