Wall clock time and date at job start Sat Apr 11 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34230 * 116.99715 * 2 1 4 4 O 1.20819 * 120.00131 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99432 * 179.97438 * 3 2 1 6 6 C 1.52999 * 110.30564 * 60.72749 * 5 3 2 7 7 C 1.54386 * 110.34690 * 298.54734 * 5 3 2 8 8 N 1.48149 * 104.62165 * 217.15778 * 7 5 3 9 9 C 1.34775 * 127.83834 * 219.59011 * 8 7 5 10 10 O 1.21583 * 120.00144 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99585 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72218 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52998 * 109.46876 * 299.99984 * 13 12 11 15 15 C 1.53005 * 109.46795 * 60.00011 * 13 12 11 16 16 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 17 17 C 1.50703 * 109.46940 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00043 * 0.02562 * 17 16 13 19 19 C 1.37875 * 120.00213 * 180.02562 * 17 16 13 20 20 N 1.31512 * 120.00116 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00201 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47135 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47080 * 119.99899 * 21 19 17 24 24 H 1.48502 * 109.47342 * 239.99982 * 21 19 17 25 25 C 1.48151 * 104.31926 * 39.84529 * 8 7 5 26 26 C 1.54285 * 110.43152 * 182.95813 * 5 3 2 27 27 H 1.09000 * 110.34249 * 359.94111 * 26 5 3 28 28 C 1.52996 * 110.34603 * 237.78975 * 26 5 3 29 29 H 1.08994 * 109.46984 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46973 * 300.00152 * 1 2 3 31 31 H 1.09007 * 109.47007 * 59.99938 * 1 2 3 32 32 H 1.08998 * 109.47148 * 299.27675 * 6 5 3 33 33 H 1.09000 * 109.47405 * 59.27169 * 6 5 3 34 34 H 1.09001 * 109.47546 * 179.27241 * 6 5 3 35 35 H 1.09002 * 110.40468 * 98.37753 * 7 5 3 36 36 H 1.08994 * 110.50745 * 335.99515 * 7 5 3 37 37 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 38 38 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 39 39 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 40 40 H 1.08996 * 109.47009 * 60.00253 * 14 13 12 41 41 H 1.09004 * 109.46783 * 179.97438 * 14 13 12 42 42 H 1.08998 * 109.47156 * 300.00070 * 14 13 12 43 43 H 1.09000 * 109.47011 * 60.00556 * 15 13 12 44 44 H 1.09004 * 109.46658 * 180.02562 * 15 13 12 45 45 H 1.08996 * 109.47069 * 299.99740 * 15 13 12 46 46 H 1.08995 * 109.47672 * 299.99669 * 16 13 12 47 47 H 1.09007 * 109.47288 * 60.00489 * 16 13 12 48 48 H 0.97000 * 120.00572 * 179.97438 * 20 19 17 49 49 H 1.08997 * 110.40662 * 78.94268 * 25 8 7 50 50 H 1.09004 * 110.40461 * 201.36987 * 25 8 7 51 51 H 1.09006 * 109.47159 * 59.99866 * 28 26 5 52 52 H 1.09002 * 109.47274 * 179.97438 * 28 26 5 53 53 H 1.08999 * 109.47441 * 299.99796 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1337 0.6017 -1.2507 7 6 4.1380 0.6123 1.2725 8 7 5.2965 1.4570 1.6456 9 6 6.4947 1.0564 2.1151 10 8 6.7195 -0.1275 2.2764 11 7 7.4436 1.9683 2.4057 12 6 8.7438 1.5332 2.9218 13 6 9.6277 2.7564 3.1739 14 6 9.8286 3.5193 1.8630 15 6 8.9526 3.6710 4.1980 16 6 10.9854 2.3021 3.7134 17 6 11.8562 3.5069 3.9611 18 1 11.4788 4.4975 3.7548 19 6 13.1346 3.3444 4.4512 20 7 13.5944 2.1381 4.7020 21 14 14.2138 4.8378 4.7589 22 1 13.4674 6.0704 4.3996 23 1 14.5907 4.8888 6.1944 24 1 15.4408 4.7416 3.9280 25 6 4.8369 2.8423 1.3916 26 6 4.0286 2.7449 0.0751 27 1 3.1671 3.4117 0.1103 28 6 4.9147 3.0853 -1.1248 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.8430 -0.4488 -1.2617 33 1 3.7413 1.0965 -2.1392 34 1 5.2210 0.6777 -1.2429 35 1 4.4635 -0.4055 1.0574 36 1 3.3951 0.6124 2.0700 37 1 7.2642 2.9129 2.2774 38 1 8.6008 0.9897 3.8558 39 1 9.2248 0.8816 2.1923 40 1 8.8612 3.8430 1.4791 41 1 10.4580 4.3910 2.0427 42 1 10.3095 2.8677 1.1334 43 1 8.8096 3.1275 5.1319 44 1 9.5821 4.5427 4.3772 45 1 7.9853 3.9947 3.8140 46 1 10.8420 1.7589 4.6474 47 1 11.4666 1.6503 2.9842 48 1 14.4940 2.0237 5.0464 49 1 4.2005 3.1871 2.2066 50 1 5.6902 3.5089 1.2665 51 1 4.3518 2.9360 -2.0462 52 1 5.2325 4.1258 -1.0582 53 1 5.7908 2.4368 -1.1251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377019905.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:12 Heat of formation + Delta-G solvation = -141.718967 kcal Electronic energy + Delta-G solvation = -31188.330500 eV Core-core repulsion = 27059.222846 eV Total energy + Delta-G solvation = -4129.107654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.29991 -41.11344 -39.54235 -38.47160 -37.48907 -35.29096 -34.56387 -33.67885 -32.29070 -29.26138 -28.77830 -28.51811 -27.93990 -27.24876 -26.72146 -25.23717 -24.27733 -22.85276 -21.15330 -20.10313 -20.09109 -19.04643 -18.53924 -18.33722 -17.82931 -17.43803 -17.05284 -16.72378 -16.43864 -15.84236 -15.60787 -15.17275 -15.04911 -14.99748 -14.88603 -14.57822 -14.33305 -14.15278 -14.00374 -13.91674 -13.83619 -13.64935 -13.30306 -12.93805 -12.92193 -12.87521 -12.68201 -12.57144 -12.54209 -12.32378 -12.20892 -12.07909 -11.92132 -11.81931 -11.76948 -11.72866 -11.51891 -11.46843 -11.30119 -10.96346 -10.82510 -10.50237 -10.25840 -9.61627 -8.12060 -6.19550 0.99827 1.40864 1.43085 1.44568 1.55871 1.72273 2.10375 2.45661 2.97331 3.18981 3.22532 3.34296 3.62958 3.84928 3.98923 4.02163 4.11538 4.13770 4.24675 4.29439 4.33993 4.42925 4.51925 4.57562 4.60406 4.66862 4.71487 4.72424 4.75049 4.77183 4.78651 4.83300 4.98302 4.98801 5.08572 5.11009 5.13452 5.14882 5.25514 5.33266 5.41171 5.46103 5.50291 5.52781 5.56109 5.60820 5.83035 5.92334 5.99918 6.33006 6.61001 6.93754 6.97182 7.47972 7.52776 9.00599 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.002129 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.757958 B =13146.628700 C =13492.505554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.482 3.518 4 O -0.522 6.522 5 C -0.060 4.060 6 C -0.135 4.135 7 C 0.140 3.860 8 N -0.637 5.637 9 C 0.724 3.276 10 O -0.635 6.635 11 N -0.720 5.720 12 C 0.162 3.838 13 C -0.063 4.063 14 C -0.120 4.120 15 C -0.121 4.121 16 C 0.040 3.960 17 C -0.510 4.510 18 H 0.074 0.926 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.959 3.041 22 H -0.256 1.256 23 H -0.286 1.286 24 H -0.285 1.285 25 C 0.100 3.900 26 C -0.090 4.090 27 H 0.109 0.891 28 C -0.143 4.143 29 H 0.129 0.871 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.408 0.592 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.056 0.944 45 H 0.067 0.933 46 H -0.014 1.014 47 H -0.013 1.013 48 H 0.259 0.741 49 H 0.087 0.913 50 H 0.097 0.903 51 H 0.068 0.932 52 H 0.074 0.926 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.518 1.988 -13.249 30.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.325 3.675 4 O -0.411 6.411 5 C -0.063 4.063 6 C -0.192 4.192 7 C 0.017 3.983 8 N -0.375 5.375 9 C 0.427 3.573 10 O -0.516 6.516 11 N -0.377 5.377 12 C 0.037 3.963 13 C -0.064 4.064 14 C -0.177 4.177 15 C -0.178 4.178 16 C 0.002 3.998 17 C -0.548 4.548 18 H 0.092 0.908 19 C -0.204 4.204 20 N -0.580 5.580 21 Si 0.784 3.216 22 H -0.179 1.179 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.022 4.022 26 C -0.109 4.109 27 H 0.127 0.873 28 C -0.200 4.200 29 H 0.147 0.853 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.246 0.754 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.004 0.996 47 H 0.005 0.995 48 H 0.068 0.932 49 H 0.105 0.895 50 H 0.116 0.884 51 H 0.087 0.913 52 H 0.093 0.907 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -27.321 1.311 -13.024 30.295 hybrid contribution 0.758 0.482 0.543 1.050 sum -26.563 1.793 -12.480 29.404 Atomic orbital electron populations 1.23591 0.74565 1.05768 1.02723 1.86529 1.25103 1.32525 1.83319 1.23435 0.91505 0.81375 0.71187 1.90637 1.67200 1.36977 1.46269 1.21455 0.86631 0.99286 0.98902 1.21938 1.01989 1.00833 0.94404 1.22075 0.86597 0.95532 0.94139 1.47859 1.11565 1.09453 1.68612 1.15445 0.79493 0.84472 0.77927 1.90902 1.80848 1.17514 1.62336 1.45008 1.13537 1.09424 1.69718 1.21088 0.81397 0.96534 0.97246 1.20707 0.94710 0.93993 0.96965 1.21676 1.01044 0.99962 0.95026 1.21689 0.99382 0.99249 0.97496 1.18971 0.91330 0.95566 0.93915 1.21621 0.98054 0.93954 1.41212 0.90828 1.25959 1.00012 0.98386 0.96039 1.70129 1.17638 1.23365 1.46841 0.85487 0.78629 0.80105 0.77347 1.17947 1.21217 1.21137 1.22811 0.99455 0.82801 0.97153 1.22285 0.99800 0.93036 0.95786 0.87263 1.21936 0.99050 1.02407 0.96591 0.85297 0.91834 0.91565 0.90993 0.90305 0.90770 0.89503 0.90563 0.75423 0.93887 0.93649 0.91334 0.92500 0.94329 0.94491 0.92453 0.91414 0.99581 0.99461 0.93233 0.89505 0.88438 0.91275 0.90731 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.36 -5.47 10.50 -51.42 -0.54 -6.01 16 3 C 0.48 8.20 6.47 71.24 0.46 8.66 16 4 O -0.52 -10.88 15.02 21.99 0.33 -10.55 16 5 C -0.06 -0.93 0.97 -52.02 -0.05 -0.98 16 6 C -0.13 -1.82 7.21 71.98 0.52 -1.30 16 7 C 0.14 2.72 6.10 86.53 0.53 3.25 16 8 N -0.64 -13.95 3.31 -825.09 -2.73 -16.69 16 9 C 0.72 22.08 8.57 179.05 1.53 23.62 16 10 O -0.63 -25.39 16.61 -3.98 -0.07 -25.45 16 11 N -0.72 -20.29 4.94 -478.53 -2.36 -22.65 16 12 C 0.16 5.82 4.56 86.38 0.39 6.21 16 13 C -0.06 -2.35 0.54 -52.18 -0.03 -2.38 16 14 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 15 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 16 C 0.04 2.01 4.04 29.85 0.12 2.13 16 17 C -0.51 -27.06 7.65 25.60 0.20 -26.87 16 18 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16 19 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 20 N -0.94 -56.95 13.29 21.45 0.28 -56.66 16 21 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 25 C 0.10 1.47 6.49 86.67 0.56 2.03 16 26 C -0.09 -1.22 3.25 -9.75 -0.03 -1.25 16 27 H 0.11 1.56 6.48 -2.39 -0.02 1.55 16 28 C -0.14 -1.65 7.94 71.98 0.57 -1.08 16 29 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 31 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 0.86 6.98 -2.39 -0.02 0.85 16 34 H 0.07 1.13 6.61 -2.39 -0.02 1.12 16 35 H 0.09 1.92 7.60 -2.39 -0.02 1.90 16 36 H 0.08 1.39 7.86 -2.39 -0.02 1.37 16 37 H 0.41 8.97 4.56 -92.71 -0.42 8.55 16 38 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 40 H 0.07 1.66 6.86 -2.39 -0.02 1.65 16 41 H 0.06 1.98 6.62 -2.38 -0.02 1.97 16 42 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.06 2.02 6.62 -2.38 -0.02 2.01 16 45 H 0.07 1.69 6.86 -2.39 -0.02 1.67 16 46 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 47 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 48 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 49 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.10 1.17 6.59 -2.38 -0.02 1.15 16 51 H 0.07 0.71 6.89 -2.38 -0.02 0.69 16 52 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.05 0.77 6.72 -2.39 -0.02 0.75 16 Total: -1.00 -73.29 409.35 5.02 -68.27 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.48 Total: 17.53 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 7.59 Total: 6.81 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -4.81 Total: -96.00 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.28 Total: -42.01 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -73.29 5.02 -68.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377019905.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.445 kcal (2) G-P(sol) polarization free energy of solvation -73.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds