Wall clock time and date at job start Sat Apr 11 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.89623 * 2 1 4 4 O 1.43895 * 110.06706 * 121.18327 * 2 1 3 5 5 C 1.44432 * 107.00021 * 145.80803 * 4 2 1 6 6 C 1.55105 * 103.55727 * 320.27794 * 5 4 2 7 7 C 1.53563 * 109.90772 * 238.92100 * 2 1 3 8 8 C 1.52228 * 110.43932 * 120.25189 * 7 2 1 9 9 N 1.47278 * 108.62564 * 186.45328 * 8 7 2 10 10 C 1.34769 * 121.05128 * 229.52359 * 9 8 7 11 11 O 1.21589 * 120.00254 * 184.69064 * 10 9 8 12 12 N 1.34775 * 119.99966 * 4.68577 * 10 9 8 13 13 C 1.46503 * 120.00135 * 174.70617 * 12 10 9 14 14 C 1.52994 * 109.47349 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47409 * 299.99787 * 14 13 12 16 16 C 1.53000 * 109.47239 * 59.99957 * 14 13 12 17 17 C 1.52999 * 109.47274 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.47331 * 179.97438 * 17 14 13 19 19 H 1.07996 * 120.00304 * 359.97438 * 18 17 14 20 20 C 1.37880 * 120.00097 * 180.02562 * 18 17 14 21 21 N 1.31515 * 120.00101 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99977 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46891 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47118 * 119.99771 * 22 20 18 25 25 H 1.48504 * 109.46850 * 239.99879 * 22 20 18 26 26 C 1.47163 * 117.89435 * 49.25098 * 9 8 7 27 27 C 1.53273 * 108.53224 * 309.23283 * 26 9 8 28 28 O 1.42226 * 110.67672 * 357.07060 * 7 2 1 29 29 H 1.09001 * 109.46647 * 181.08191 * 1 2 3 30 30 H 1.08999 * 109.46829 * 301.08019 * 1 2 3 31 31 H 1.09003 * 109.47458 * 61.08154 * 1 2 3 32 32 H 1.09002 * 110.60151 * 78.79196 * 5 4 2 33 33 H 1.08998 * 110.60681 * 201.60354 * 5 4 2 34 34 H 1.08997 * 110.93205 * 278.44211 * 6 5 4 35 35 H 1.08997 * 110.93146 * 154.77373 * 6 5 4 36 36 H 1.08995 * 109.61254 * 66.62299 * 8 7 2 37 37 H 1.08999 * 109.50469 * 306.22028 * 8 7 2 38 38 H 0.96996 * 120.00586 * 354.98180 * 12 10 9 39 39 H 1.09004 * 109.47032 * 299.99755 * 13 12 10 40 40 H 1.08998 * 109.47597 * 59.99662 * 13 12 10 41 41 H 1.08998 * 109.46958 * 59.99541 * 15 14 13 42 42 H 1.08998 * 109.47835 * 180.02562 * 15 14 13 43 43 H 1.09004 * 109.47092 * 300.00561 * 15 14 13 44 44 H 1.08995 * 109.47024 * 60.00201 * 16 14 13 45 45 H 1.09008 * 109.46969 * 180.02562 * 16 14 13 46 46 H 1.09002 * 109.46990 * 299.99499 * 16 14 13 47 47 H 1.09004 * 109.47137 * 299.99707 * 17 14 13 48 48 H 1.08998 * 109.47566 * 59.99659 * 17 14 13 49 49 H 0.96999 * 119.99955 * 180.02562 * 21 20 18 50 50 H 1.09001 * 109.62541 * 68.94427 * 26 9 8 51 51 H 1.09002 * 109.62396 * 189.32539 * 26 9 8 52 52 H 1.08995 * 109.51593 * 172.72935 * 27 26 9 53 53 H 1.09008 * 109.51048 * 292.87916 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 8 2.0237 -0.6998 1.1563 5 6 3.2418 -1.3663 0.7584 6 6 2.9226 -1.8859 -0.6678 7 6 2.0529 -0.7454 -1.2366 8 6 2.9096 0.1783 -2.0912 9 7 3.2600 -0.5244 -3.3372 10 6 4.5344 -0.5732 -3.7730 11 8 4.7908 -1.0841 -4.8461 12 7 5.5245 -0.0555 -3.0193 13 6 6.9203 -0.2107 -3.4366 14 6 7.8365 0.4626 -2.4129 15 6 7.4937 1.9510 -2.3227 16 6 7.6380 -0.1903 -1.0435 17 6 9.2942 0.3000 -2.8483 18 6 10.1966 0.9638 -1.8403 19 1 9.7729 1.4531 -0.9758 20 6 11.5633 0.9473 -2.0223 21 7 12.0793 0.3519 -3.0753 22 14 12.6819 1.7695 -0.7724 23 1 11.8599 2.3630 0.3126 24 1 13.6076 0.7607 -0.1975 25 1 13.4674 2.8390 -1.4392 26 6 2.1754 -1.1768 -4.0881 27 6 1.3780 -2.0610 -3.1229 28 8 0.9744 -1.2809 -1.9935 29 1 -0.3633 -1.0275 0.0194 30 1 -0.3633 0.5305 0.8801 31 1 -0.3634 0.4969 -0.8995 32 1 4.0735 -0.6622 0.7329 33 1 3.4628 -2.1952 1.4308 34 1 2.3616 -2.8195 -0.6256 35 1 3.8353 -2.0078 -1.2511 36 1 3.8184 0.4398 -1.5492 37 1 2.3479 1.0826 -2.3252 38 1 5.3134 0.4163 -2.1986 39 1 7.1647 -1.2711 -3.5003 40 1 7.0617 0.2540 -4.4123 41 1 6.4553 2.0665 -2.0123 42 1 8.1467 2.4308 -1.5938 43 1 7.6351 2.4161 -3.2983 44 1 7.8823 -1.2506 -1.1077 45 1 8.2905 0.2898 -0.3141 46 1 6.5996 -0.0747 -0.7330 47 1 9.5382 -0.7604 -2.9121 48 1 9.4360 0.7648 -3.8240 49 1 13.0408 0.3401 -3.2031 50 1 1.5198 -0.4189 -4.5170 51 1 2.5984 -1.7884 -4.8851 52 1 0.4956 -2.4504 -3.6305 53 1 2.0021 -2.8899 -2.7886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377028002.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:17 Heat of formation + Delta-G solvation = -137.430619 kcal Electronic energy + Delta-G solvation = -32287.215204 eV Core-core repulsion = 28158.293507 eV Total energy + Delta-G solvation = -4128.921697 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.25596 -40.81948 -39.06003 -38.41732 -35.97229 -35.26341 -33.99833 -33.38338 -32.46681 -30.32584 -29.10766 -28.45740 -27.97359 -27.33232 -25.51607 -25.06135 -24.10241 -23.09629 -21.57033 -20.49007 -20.00407 -18.99214 -18.36409 -18.08395 -17.61605 -17.34095 -16.67600 -16.63661 -16.47514 -16.14397 -15.85339 -15.56219 -15.41053 -15.18464 -14.99481 -14.66836 -14.56733 -14.37528 -13.94966 -13.85809 -13.74270 -13.44139 -13.25479 -13.08103 -12.90070 -12.76104 -12.69144 -12.60491 -12.45397 -12.35257 -12.23101 -12.08307 -11.97071 -11.93221 -11.74833 -11.54895 -11.29656 -11.14736 -10.98430 -10.84087 -10.69672 -10.51468 -10.22583 -9.51420 -8.13403 -6.20929 1.42203 1.42372 1.44760 1.55025 2.02590 2.44462 2.48686 2.76293 2.82632 3.21563 3.37123 3.48475 3.69355 3.86872 3.91565 4.03033 4.05881 4.07993 4.14090 4.21204 4.24890 4.30568 4.39067 4.46382 4.52616 4.67348 4.68059 4.70261 4.71787 4.77660 4.80483 4.85769 4.92502 4.95645 4.97822 5.09392 5.10145 5.11944 5.29147 5.36385 5.42252 5.47163 5.50553 5.53403 5.58021 5.76189 5.80482 5.87631 5.90828 6.07764 6.31268 6.83644 6.94817 7.44539 7.47079 8.99344 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.002848 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.215451 B = 9829.837925 C =10954.217141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.085 3.915 3 H 0.098 0.902 4 O -0.386 6.386 5 C 0.046 3.954 6 C -0.176 4.176 7 C 0.082 3.918 8 C 0.091 3.909 9 N -0.627 5.627 10 C 0.704 3.296 11 O -0.632 6.632 12 N -0.724 5.724 13 C 0.161 3.839 14 C -0.064 4.064 15 C -0.121 4.121 16 C -0.119 4.119 17 C 0.041 3.959 18 C -0.511 4.511 19 H 0.074 0.926 20 C -0.005 4.005 21 N -0.939 5.939 22 Si 0.957 3.043 23 H -0.255 1.255 24 H -0.285 1.285 25 H -0.286 1.286 26 C 0.093 3.907 27 C 0.051 3.949 28 O -0.359 6.359 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.405 0.595 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.038 0.962 45 H 0.057 0.943 46 H 0.066 0.934 47 H -0.013 1.013 48 H -0.015 1.015 49 H 0.259 0.741 50 H 0.087 0.913 51 H 0.087 0.913 52 H 0.135 0.865 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.638 -0.925 6.896 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.027 3.973 3 H 0.116 0.884 4 O -0.305 6.305 5 C -0.030 4.030 6 C -0.214 4.214 7 C 0.040 3.960 8 C -0.032 4.032 9 N -0.365 5.365 10 C 0.406 3.594 11 O -0.513 6.513 12 N -0.382 5.382 13 C 0.036 3.964 14 C -0.065 4.065 15 C -0.178 4.178 16 C -0.177 4.177 17 C 0.003 3.997 18 C -0.549 4.549 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.580 5.580 22 Si 0.782 3.218 23 H -0.179 1.179 24 H -0.211 1.211 25 H -0.212 1.212 26 C -0.030 4.030 27 C -0.026 4.026 28 O -0.277 6.277 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.245 0.755 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.005 0.995 48 H 0.004 0.996 49 H 0.068 0.932 50 H 0.105 0.895 51 H 0.106 0.894 52 H 0.152 0.848 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -26.576 -1.301 6.308 27.346 hybrid contribution 1.719 0.126 -0.060 1.724 sum -24.858 -1.175 6.248 25.658 Atomic orbital electron populations 1.21609 0.91923 1.02828 1.02684 1.22744 0.97047 0.95431 0.82079 0.88431 1.88967 1.40407 1.68050 1.33111 1.23626 0.87533 0.97337 0.94530 1.23638 1.00668 0.99474 0.97628 1.22596 0.87626 0.93641 0.92091 1.22306 1.00515 0.95734 0.84610 1.47272 1.05136 1.58013 1.26099 1.15977 0.81040 0.79130 0.83287 1.90894 1.83044 1.53536 1.23859 1.45188 1.05147 1.60445 1.27406 1.21092 0.78735 0.99284 0.97274 1.20714 0.94587 0.96097 0.95053 1.21685 1.00498 0.94284 1.01330 1.21676 1.00789 0.99556 0.95634 1.18961 0.90780 0.94818 0.95143 1.21618 0.91208 1.33891 1.08165 0.90793 1.25935 1.00386 0.96499 0.97357 1.70128 1.12084 1.45792 1.30009 0.85516 0.78854 0.78016 0.79374 1.17899 1.21143 1.21215 1.22265 0.87932 0.97581 0.95182 1.23132 1.00772 0.92450 0.86289 1.87915 1.30237 1.68855 1.40686 0.92587 0.91711 0.89978 0.90566 0.87773 0.89814 0.90561 0.88533 0.88335 0.75493 0.93692 0.93874 0.91531 0.92361 0.94480 0.94255 0.92389 0.91514 0.99477 0.99626 0.93221 0.89498 0.89438 0.84758 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.63 71.98 0.62 -1.12 16 2 C 0.08 1.20 3.72 30.78 0.11 1.31 16 3 H 0.10 1.05 7.68 -2.39 -0.02 1.04 16 4 O -0.39 -6.95 11.21 -148.98 -1.67 -8.62 16 5 C 0.05 0.69 7.73 72.70 0.56 1.25 16 6 C -0.18 -2.79 5.14 31.76 0.16 -2.63 16 7 C 0.08 1.19 0.96 -10.42 -0.01 1.18 16 8 C 0.09 1.35 4.91 85.98 0.42 1.77 16 9 N -0.63 -13.04 2.70 -837.10 -2.26 -15.30 16 10 C 0.70 20.63 8.31 179.06 1.49 22.12 16 11 O -0.63 -24.43 15.85 -3.99 -0.06 -24.50 16 12 N -0.72 -19.68 4.87 -478.54 -2.33 -22.02 16 13 C 0.16 5.65 4.57 86.38 0.39 6.04 16 14 C -0.06 -2.33 0.54 -52.18 -0.03 -2.36 16 15 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 16 C -0.12 -3.76 8.05 71.98 0.58 -3.18 16 17 C 0.04 2.02 4.04 29.85 0.12 2.14 16 18 C -0.51 -26.76 7.65 25.60 0.20 -26.57 16 19 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 20 C 0.00 -0.28 5.46 84.66 0.46 0.19 16 21 N -0.94 -56.58 13.29 21.45 0.28 -56.29 16 22 Si 0.96 42.98 29.54 68.60 2.03 45.01 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 26 C 0.09 1.64 6.61 86.34 0.57 2.21 16 27 C 0.05 0.69 6.74 72.07 0.49 1.18 16 28 O -0.36 -5.45 8.39 -148.98 -1.25 -6.70 16 29 H 0.05 0.87 7.81 -2.39 -0.02 0.85 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.92 7.95 -2.39 -0.02 0.90 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.39 7.70 -2.39 -0.02 1.38 16 35 H 0.08 1.39 7.60 -2.39 -0.02 1.37 16 36 H 0.10 1.26 5.65 -2.39 -0.01 1.25 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.41 8.60 3.69 -92.71 -0.34 8.26 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 1.61 6.87 -2.39 -0.02 1.59 16 42 H 0.06 2.01 6.62 -2.39 -0.02 2.00 16 43 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.97 6.62 -2.38 -0.02 1.95 16 46 H 0.07 1.54 6.86 -2.39 -0.02 1.52 16 47 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 48 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 49 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 50 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.09 1.87 7.11 -2.39 -0.02 1.85 16 52 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.05 0.80 6.97 -2.38 -0.02 0.78 16 Total: -1.00 -70.91 399.07 2.02 -68.90 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.55 Total: 19.32 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 6.72 Total: 0.21 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -4.30 Total: -93.60 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -2.98 Total: -39.82 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -70.91 2.02 -68.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377028002.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.534 kcal (2) G-P(sol) polarization free energy of solvation -70.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds