Wall clock time and date at job start Sat Apr 11 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.05060 * 2 1 4 4 O 1.43898 * 109.91123 * 238.82009 * 2 1 3 5 5 C 1.44424 * 107.00247 * 266.99433 * 4 2 1 6 6 C 1.55105 * 103.55570 * 320.27404 * 5 4 2 7 7 C 1.53557 * 109.90910 * 121.17825 * 2 1 3 8 8 C 1.53106 * 110.32390 * 235.69203 * 7 2 1 9 9 N 1.47279 * 108.14865 * 173.87121 * 8 7 2 10 10 C 1.34776 * 121.04941 * 130.34907 * 9 8 7 11 11 O 1.21586 * 119.99845 * 184.93242 * 10 9 8 12 12 N 1.34773 * 120.00131 * 4.92977 * 10 9 8 13 13 C 1.46504 * 119.99981 * 175.29975 * 12 10 9 14 14 C 1.52992 * 109.47312 * 179.72731 * 13 12 10 15 15 C 1.52995 * 109.47224 * 299.99770 * 14 13 12 16 16 C 1.53001 * 109.47334 * 60.00012 * 14 13 12 17 17 C 1.53000 * 109.47424 * 179.97438 * 14 13 12 18 18 C 1.50697 * 109.47690 * 179.97438 * 17 14 13 19 19 H 1.08002 * 119.99562 * 359.97438 * 18 17 14 20 20 C 1.37877 * 120.00363 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99859 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00066 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47032 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47386 * 119.99485 * 22 20 18 25 25 H 1.48496 * 109.47258 * 239.99780 * 22 20 18 26 26 C 1.47164 * 117.89622 * 310.07949 * 9 8 7 27 27 C 1.53273 * 108.53464 * 51.29887 * 26 9 8 28 28 O 1.42237 * 110.65773 * 358.56811 * 7 2 1 29 29 H 1.08999 * 109.47173 * 298.81703 * 1 2 3 30 30 H 1.09004 * 109.46687 * 58.81666 * 1 2 3 31 31 H 1.08999 * 109.46945 * 178.81935 * 1 2 3 32 32 H 1.09003 * 110.60294 * 78.78527 * 5 4 2 33 33 H 1.08997 * 110.60984 * 201.75493 * 5 4 2 34 34 H 1.09003 * 110.93144 * 278.43687 * 6 5 4 35 35 H 1.09003 * 110.93289 * 154.76668 * 6 5 4 36 36 H 1.08997 * 109.85455 * 54.18166 * 8 7 2 37 37 H 1.09008 * 109.74299 * 293.48875 * 8 7 2 38 38 H 0.96999 * 120.00248 * 355.02517 * 12 10 9 39 39 H 1.09006 * 109.46691 * 299.72788 * 13 12 10 40 40 H 1.08994 * 109.47193 * 59.72311 * 13 12 10 41 41 H 1.09008 * 109.46880 * 60.00014 * 15 14 13 42 42 H 1.08996 * 109.47565 * 179.97438 * 15 14 13 43 43 H 1.09002 * 109.47185 * 300.00178 * 15 14 13 44 44 H 1.09006 * 109.47195 * 59.99621 * 16 14 13 45 45 H 1.08996 * 109.47248 * 180.02562 * 16 14 13 46 46 H 1.09008 * 109.46951 * 300.00097 * 16 14 13 47 47 H 1.08998 * 109.47529 * 300.00302 * 17 14 13 48 48 H 1.09002 * 109.46713 * 59.99989 * 17 14 13 49 49 H 0.96996 * 119.99929 * 179.97438 * 21 20 18 50 50 H 1.08995 * 109.62531 * 171.01492 * 26 9 8 51 51 H 1.09006 * 109.62597 * 291.58431 * 26 9 8 52 52 H 1.09003 * 109.51254 * 67.12382 * 27 26 9 53 53 H 1.08992 * 109.51240 * 187.27570 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 8 2.0201 -0.7005 -1.1575 5 6 2.2320 -2.0732 -0.7621 6 6 2.8292 -1.9526 0.6643 7 6 2.0529 -0.7475 1.2353 8 6 2.9949 0.1510 2.0412 9 7 3.3493 -0.5542 3.2847 10 6 4.6339 -0.6718 3.6752 11 8 4.9129 -1.3338 4.6562 12 7 5.6092 -0.0557 2.9784 13 6 6.9921 -0.0976 3.4601 14 6 7.8938 0.6673 2.4893 15 6 7.8164 0.0212 1.1046 16 6 7.4288 2.1222 2.3999 17 6 9.3380 0.6241 2.9927 18 6 10.2263 1.3770 2.0362 19 1 9.8031 1.8397 1.1568 20 6 11.5793 1.4742 2.2830 21 7 12.0946 0.9103 3.3536 22 14 12.6802 2.4081 1.0976 23 1 11.8620 2.9451 -0.0193 24 1 13.3389 3.5302 1.8133 25 1 13.7150 1.4910 0.5560 26 6 2.2560 -1.1212 4.0902 27 6 1.3703 -1.9759 3.1768 28 8 0.9728 -1.1978 2.0438 29 1 -0.3633 0.4953 0.9004 30 1 -0.3633 0.5321 -0.8792 31 1 -0.3633 -1.0274 -0.0212 32 1 1.2868 -2.6156 -0.7376 33 1 2.9383 -2.5613 -1.4336 34 1 3.8981 -1.7429 0.6225 35 1 2.6329 -2.8533 1.2461 36 1 2.4959 1.0899 2.2811 37 1 3.8970 0.3515 1.4630 38 1 5.3962 0.4122 2.1558 39 1 7.0472 0.3627 4.4467 40 1 7.3234 -1.1340 3.5238 41 1 6.7874 0.0524 0.7462 42 1 8.4584 0.5664 0.4128 43 1 8.1477 -1.0153 1.1683 44 1 7.4839 2.5826 3.3865 45 1 8.0709 2.6670 1.7079 46 1 6.3998 2.1534 2.0415 47 1 9.3929 1.0846 3.9791 48 1 9.6695 -0.4123 3.0567 49 1 13.0465 0.9784 3.5270 50 1 2.6704 -1.7425 4.8841 51 1 1.6644 -0.3148 4.5238 52 1 1.9295 -2.8491 2.8407 53 1 0.4855 -2.2983 3.7255 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377028005.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:22 Heat of formation + Delta-G solvation = -136.710918 kcal Electronic energy + Delta-G solvation = -32097.649041 eV Core-core repulsion = 27968.758552 eV Total energy + Delta-G solvation = -4128.890489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.21867 -40.86236 -39.05809 -38.40208 -35.94758 -35.25725 -33.98600 -33.32765 -32.24988 -30.36235 -29.16702 -28.64838 -27.97975 -27.37957 -25.54006 -25.11152 -24.12746 -22.69219 -21.55727 -20.55577 -20.08680 -19.05963 -18.37445 -18.00952 -17.80034 -17.27188 -16.97402 -16.56612 -16.44252 -15.86790 -15.63593 -15.50728 -15.40622 -15.07006 -14.94612 -14.70167 -14.64220 -14.38436 -14.07836 -13.95137 -13.75287 -13.66914 -13.21757 -12.91239 -12.88032 -12.74963 -12.69600 -12.61088 -12.53459 -12.35722 -12.23366 -12.09155 -11.96059 -11.88505 -11.73001 -11.55249 -11.31008 -11.10205 -10.98955 -10.84775 -10.67007 -10.51660 -10.22417 -9.48720 -8.13624 -6.21198 1.42096 1.42904 1.45812 1.55026 2.03094 2.44388 2.50323 2.77577 2.88517 3.21206 3.32444 3.48593 3.71376 3.87454 3.92610 4.02990 4.06599 4.08423 4.17627 4.19942 4.23047 4.30630 4.39135 4.49653 4.51235 4.66960 4.67282 4.71066 4.71475 4.76744 4.77230 4.86705 4.93427 4.96274 5.01434 5.09092 5.10803 5.11371 5.31026 5.36599 5.42140 5.47051 5.49680 5.52765 5.57662 5.74288 5.79787 5.80385 5.90471 6.13457 6.31131 6.84565 6.94402 7.45415 7.46834 8.99170 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016773 B = 0.002712 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.954343 B =10322.600200 C =11346.171843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.086 3.914 3 H 0.119 0.881 4 O -0.384 6.384 5 C 0.051 3.949 6 C -0.179 4.179 7 C 0.083 3.917 8 C 0.092 3.908 9 N -0.628 5.628 10 C 0.704 3.296 11 O -0.633 6.633 12 N -0.725 5.725 13 C 0.161 3.839 14 C -0.064 4.064 15 C -0.119 4.119 16 C -0.120 4.120 17 C 0.041 3.959 18 C -0.511 4.511 19 H 0.073 0.927 20 C -0.005 4.005 21 N -0.939 5.939 22 Si 0.957 3.043 23 H -0.256 1.256 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.092 3.908 27 C 0.048 3.952 28 O -0.357 6.357 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.405 0.595 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.037 0.963 44 H 0.038 0.962 45 H 0.057 0.943 46 H 0.066 0.934 47 H -0.013 1.013 48 H -0.014 1.014 49 H 0.259 0.741 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.055 0.945 53 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.953 -2.809 -7.248 29.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.028 3.972 3 H 0.136 0.864 4 O -0.303 6.303 5 C -0.025 4.025 6 C -0.217 4.217 7 C 0.041 3.959 8 C -0.031 4.031 9 N -0.366 5.366 10 C 0.406 3.594 11 O -0.514 6.514 12 N -0.382 5.382 13 C 0.036 3.964 14 C -0.064 4.064 15 C -0.177 4.177 16 C -0.177 4.177 17 C 0.003 3.997 18 C -0.549 4.549 19 H 0.091 0.909 20 C -0.202 4.202 21 N -0.580 5.580 22 Si 0.783 3.217 23 H -0.180 1.180 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.031 4.031 27 C -0.029 4.029 28 O -0.275 6.275 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.245 0.755 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.005 0.995 48 H 0.004 0.996 49 H 0.068 0.932 50 H 0.106 0.894 51 H 0.106 0.894 52 H 0.073 0.927 53 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -27.747 -3.152 -6.701 28.718 hybrid contribution 1.557 0.122 0.073 1.564 sum -26.190 -3.030 -6.628 27.185 Atomic orbital electron populations 1.21907 0.93544 1.02708 1.02645 1.22786 0.95935 0.96604 0.81873 0.86351 1.88981 1.86238 1.21721 1.33405 1.23601 1.00516 0.83901 0.94532 1.23665 1.00751 0.99443 0.97858 1.22711 0.87552 0.93972 0.91621 1.22496 0.99889 0.95934 0.84774 1.47280 1.03854 1.59943 1.25481 1.15984 0.81165 0.79833 0.82468 1.90886 1.82506 1.47027 1.31015 1.45201 1.06819 1.57840 1.28375 1.21083 0.79227 0.99259 0.96787 1.20712 0.94731 0.95794 0.95204 1.21671 1.00841 0.99584 0.95574 1.21682 1.00134 0.94623 1.01303 1.18961 0.90799 0.94911 0.95024 1.21616 0.92440 1.32419 1.08470 0.90860 1.25937 1.00232 0.96982 0.97029 1.70128 1.12792 1.46529 1.28554 0.85504 0.78782 0.78144 0.79266 1.17966 1.21096 1.21140 1.22280 0.87319 0.98943 0.94541 1.23191 1.00374 0.92737 0.86560 1.87919 1.30263 1.70938 1.38418 0.90413 0.91781 0.92640 0.91231 0.87904 0.90437 0.89415 0.88365 0.88697 0.75496 0.93721 0.93841 0.91706 0.92397 0.94406 0.94303 0.92411 0.91541 0.99471 0.99553 0.93198 0.89430 0.89433 0.92696 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.56 71.98 0.62 -1.24 16 2 C 0.09 1.18 3.76 30.78 0.12 1.30 16 3 H 0.12 1.29 7.68 -2.39 -0.02 1.27 16 4 O -0.38 -6.79 11.20 -148.98 -1.67 -8.46 16 5 C 0.05 0.74 7.68 72.70 0.56 1.30 16 6 C -0.18 -2.80 6.05 31.76 0.19 -2.60 16 7 C 0.08 1.19 0.96 -10.13 -0.01 1.18 16 8 C 0.09 1.40 4.97 86.27 0.43 1.83 16 9 N -0.63 -13.22 2.88 -835.39 -2.41 -15.62 16 10 C 0.70 21.02 8.31 179.06 1.49 22.51 16 11 O -0.63 -24.67 15.82 -3.99 -0.06 -24.74 16 12 N -0.72 -20.41 4.87 -478.55 -2.33 -22.74 16 13 C 0.16 5.80 4.57 86.38 0.39 6.19 16 14 C -0.06 -2.39 0.54 -52.19 -0.03 -2.42 16 15 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 16 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 17 C 0.04 2.05 4.04 29.85 0.12 2.17 16 18 C -0.51 -27.15 7.65 25.60 0.20 -26.95 16 19 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16 20 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 21 N -0.94 -56.93 13.29 21.45 0.28 -56.65 16 22 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 25 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 26 C 0.09 1.60 6.63 86.34 0.57 2.17 16 27 C 0.05 0.62 6.73 72.07 0.49 1.11 16 28 O -0.36 -5.07 8.42 -148.98 -1.25 -6.32 16 29 H 0.08 0.87 7.85 -2.39 -0.02 0.85 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.77 7.91 -2.39 -0.02 0.75 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.36 7.71 -2.39 -0.02 1.35 16 35 H 0.09 1.39 5.96 -2.39 -0.01 1.37 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.36 5.61 -2.38 -0.01 1.35 16 38 H 0.41 9.13 3.73 -92.71 -0.35 8.78 16 39 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 1.64 6.86 -2.38 -0.02 1.63 16 42 H 0.06 2.06 6.62 -2.39 -0.02 2.04 16 43 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.06 2.04 6.62 -2.39 -0.02 2.02 16 46 H 0.07 1.65 6.86 -2.38 -0.02 1.64 16 47 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 48 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 16 49 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 50 H 0.09 1.87 7.06 -2.39 -0.02 1.85 16 51 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 52 H 0.05 0.79 6.12 -2.39 -0.01 0.78 16 53 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -71.07 397.63 1.90 -69.17 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.56 Total: 20.02 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 6.75 Total: -0.06 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -4.45 Total: -95.01 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -2.99 Total: -39.51 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -71.07 1.90 -69.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377028005.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.541 kcal (2) G-P(sol) polarization free energy of solvation -71.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds