Wall clock time and date at job start Sat Apr 11 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46960 * 2 1 4 4 C 1.50693 * 109.47258 * 240.00360 * 2 1 3 5 5 H 1.08005 * 119.99606 * 240.00355 * 4 2 1 6 6 C 1.37878 * 120.00684 * 59.99714 * 4 2 1 7 7 N 1.31515 * 119.99207 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00467 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47127 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47204 * 300.00456 * 8 6 4 11 11 H 1.48500 * 109.47083 * 60.00078 * 8 6 4 12 12 N 1.46495 * 109.47218 * 119.99812 * 2 1 3 13 13 C 1.46501 * 119.99890 * 60.00060 * 12 2 1 14 14 C 1.34779 * 120.00284 * 240.00601 * 12 2 1 15 15 O 1.21274 * 119.99810 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00062 * 180.02562 * 14 12 2 17 17 H 1.09003 * 110.64023 * 34.48481 * 16 14 12 18 18 C 1.55160 * 110.72148 * 157.81813 * 16 14 12 19 19 C 1.54909 * 101.58132 * 153.86250 * 18 16 14 20 20 N 1.47422 * 104.83198 * 322.99447 * 19 18 16 21 21 C 1.34781 * 125.64403 * 204.16397 * 20 19 18 22 22 O 1.21513 * 119.99804 * 179.97438 * 21 20 19 23 23 O 1.34634 * 120.00372 * 359.95593 * 21 20 19 24 24 C 1.45203 * 117.00370 * 179.97438 * 23 21 20 25 25 C 1.53004 * 109.46646 * 60.00197 * 24 23 21 26 26 C 1.52989 * 109.47145 * 180.02562 * 24 23 21 27 27 C 1.53002 * 109.46921 * 300.00257 * 24 23 21 28 28 C 1.47015 * 108.70806 * 24.12698 * 20 19 18 29 29 H 1.08998 * 110.01339 * 118.43011 * 28 20 19 30 30 C 1.53001 * 109.88394 * 239.52676 * 28 20 19 31 31 H 1.09003 * 109.46789 * 60.00318 * 1 2 3 32 32 H 1.08997 * 109.46656 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46936 * 300.00285 * 1 2 3 34 34 H 0.97003 * 119.99300 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47250 * 90.00034 * 13 12 2 36 36 H 1.08999 * 109.47029 * 210.00322 * 13 12 2 37 37 H 1.08998 * 109.47387 * 330.00168 * 13 12 2 38 38 H 1.08996 * 111.00411 * 271.94332 * 18 16 14 39 39 H 1.09005 * 111.00116 * 35.79059 * 18 16 14 40 40 H 1.09000 * 110.36725 * 204.15158 * 19 18 16 41 41 H 1.08999 * 110.45821 * 81.88044 * 19 18 16 42 42 H 1.08988 * 109.47332 * 60.00045 * 25 24 23 43 43 H 1.09001 * 109.46825 * 180.02562 * 25 24 23 44 44 H 1.09005 * 109.46962 * 299.99950 * 25 24 23 45 45 H 1.08999 * 109.47603 * 60.00106 * 26 24 23 46 46 H 1.09000 * 109.47310 * 179.97438 * 26 24 23 47 47 H 1.09002 * 109.47596 * 300.00353 * 26 24 23 48 48 H 1.08999 * 109.47173 * 59.99988 * 27 24 23 49 49 H 1.09001 * 109.47029 * 179.97438 * 27 24 23 50 50 H 1.08996 * 109.47347 * 299.99982 * 27 24 23 51 51 H 1.09004 * 109.47029 * 182.55888 * 30 28 20 52 52 H 1.09000 * 109.46757 * 302.55409 * 30 28 20 53 53 H 1.09000 * 109.47485 * 62.55926 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6033 8 14 2.3215 -1.1202 -4.0079 9 1 1.8271 -0.4198 -5.2204 10 1 3.8065 -1.1209 -4.0081 11 1 1.8260 -2.5201 -4.0077 12 7 2.0184 -0.6905 1.1961 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0834 15 8 3.0865 1.1254 1.8913 16 6 3.2960 -0.7461 3.3135 17 1 3.4996 -1.7945 3.0954 18 6 4.5597 -0.0429 3.8758 19 6 4.4927 -0.4336 5.3733 20 7 3.0565 -0.4109 5.7053 21 6 2.5376 -0.2314 6.9362 22 8 1.3327 -0.2306 7.0934 23 8 3.3543 -0.0532 7.9916 24 6 2.7259 0.1348 9.2871 25 6 1.8785 -1.0932 9.6258 26 6 3.8053 0.3206 10.3553 27 6 1.8319 1.3757 9.2449 28 6 2.2840 -0.6158 4.4713 29 1 1.6908 -1.5269 4.5495 30 6 1.3657 0.5834 4.2272 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 0.7090 1.1614 -3.4844 35 1 2.4158 -2.7376 0.9717 36 1 1.6238 -2.2851 2.5002 37 1 0.6905 -2.3002 0.9846 38 1 5.4642 -0.4339 3.4100 39 1 4.4936 1.0379 3.7506 40 1 5.0337 0.2930 5.9795 41 1 4.9014 -1.4325 5.5251 42 1 2.5153 -1.9771 9.6557 43 1 1.4064 -0.9519 10.5980 44 1 1.1094 -1.2251 8.8646 45 1 4.4088 1.1956 10.1138 46 1 3.3337 0.4622 11.3277 47 1 4.4427 -0.5631 10.3854 48 1 1.0629 1.2438 8.4838 49 1 1.3598 1.5166 10.2173 50 1 2.4356 2.2505 9.0036 51 1 0.7636 0.4045 3.3363 52 1 0.7102 0.7200 5.0873 53 1 1.9689 1.4799 4.0840 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492307820.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:43 Heat of formation + Delta-G solvation = -129.468358 kcal Electronic energy + Delta-G solvation = -31951.770397 eV Core-core repulsion = 27823.193969 eV Total energy + Delta-G solvation = -4128.576428 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.14308 -41.20972 -39.29236 -37.55685 -37.01892 -35.15983 -34.77606 -32.93980 -32.28517 -31.15905 -28.34043 -28.26134 -27.65057 -27.38855 -27.24036 -25.20449 -23.83548 -22.59088 -21.55852 -20.37408 -19.50443 -18.98756 -18.45437 -17.99044 -17.56780 -17.42139 -17.04455 -16.60662 -16.27557 -16.04717 -15.61481 -15.28985 -14.97419 -14.78869 -14.50341 -14.39233 -14.21958 -13.90736 -13.59449 -13.48622 -13.46112 -13.28933 -13.19913 -13.06500 -13.01018 -12.89231 -12.86560 -12.81933 -12.69876 -12.57492 -12.49547 -12.41340 -12.21652 -12.15524 -12.11864 -11.94250 -11.77171 -11.36030 -11.16297 -11.03943 -10.64346 -10.45102 -9.84224 -9.28934 -8.12412 -6.28867 0.97068 1.43021 1.45077 1.52399 1.74008 1.77698 2.31417 2.49878 2.85987 3.15570 3.37397 3.44488 3.68075 3.78309 3.82821 3.97573 3.98831 4.14535 4.19069 4.28915 4.44347 4.47573 4.50554 4.60732 4.64105 4.68815 4.71120 4.75608 4.79126 4.79988 4.85759 4.87454 4.90586 4.90956 4.97591 5.04885 5.09150 5.11825 5.15452 5.20449 5.25824 5.30956 5.37678 5.47472 5.48554 5.64544 5.69667 6.05443 6.18408 6.40381 6.79380 6.85825 7.25295 7.34237 7.50658 8.91573 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.028642 B = 0.002452 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.352612 B =11418.492267 C =11684.112071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.264 3.736 3 H 0.009 0.991 4 C -0.535 4.535 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.262 1.262 12 N -0.599 5.599 13 C 0.079 3.921 14 C 0.515 3.485 15 O -0.594 6.594 16 C -0.113 4.113 17 H 0.139 0.861 18 C -0.113 4.113 19 C 0.110 3.890 20 N -0.601 5.601 21 C 0.665 3.335 22 O -0.588 6.588 23 O -0.363 6.363 24 C 0.124 3.876 25 C -0.178 4.178 26 C -0.134 4.134 27 C -0.181 4.181 28 C 0.179 3.821 29 H 0.099 0.901 30 C -0.160 4.160 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.263 0.737 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.102 0.898 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.092 0.908 50 H 0.057 0.943 51 H 0.055 0.945 52 H 0.066 0.934 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.493 -7.662 24.723 26.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.162 3.838 3 H 0.027 0.973 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.187 1.187 12 N -0.329 5.329 13 C -0.063 4.063 14 C 0.303 3.697 15 O -0.475 6.475 16 C -0.134 4.134 17 H 0.157 0.843 18 C -0.152 4.152 19 C -0.011 4.011 20 N -0.342 5.342 21 C 0.421 3.579 22 O -0.479 6.479 23 O -0.278 6.278 24 C 0.088 3.912 25 C -0.235 4.235 26 C -0.191 4.191 27 C -0.238 4.238 28 C 0.076 3.924 29 H 0.117 0.883 30 C -0.218 4.218 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.121 0.879 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.110 0.890 50 H 0.076 0.924 51 H 0.074 0.926 52 H 0.085 0.915 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.142 -6.946 24.694 26.377 hybrid contribution -0.233 0.260 -1.421 1.463 sum 5.908 -6.686 23.273 24.925 Atomic orbital electron populations 1.21891 0.97488 1.00061 0.99773 1.18483 0.91339 0.92190 0.81774 0.97328 1.21555 1.31772 1.13017 0.91034 0.91877 1.25750 0.95151 0.95652 1.02090 1.70028 1.37424 1.23974 1.24384 0.85517 0.78455 0.78954 0.78133 1.21242 1.20134 1.18713 1.48210 1.48930 1.13336 1.22388 1.21855 1.01856 0.80628 1.01969 1.20611 0.78062 0.86488 0.84510 1.90627 1.59841 1.19220 1.77837 1.22511 0.97065 1.03066 0.90802 0.84348 1.22759 0.96923 1.01220 0.94274 1.22532 0.79777 1.03844 0.94957 1.47277 1.09412 1.74045 1.03514 1.17574 0.83272 0.76184 0.80845 1.90886 1.14631 1.57544 1.84791 1.86312 1.39985 1.84764 1.16721 1.22441 0.94393 0.96088 0.78293 1.22456 1.00604 0.96793 1.03636 1.21869 0.97425 1.03480 0.96299 1.22483 1.00375 0.96657 1.04315 1.21195 0.91494 0.98852 0.80830 0.88273 1.22125 0.99744 0.98257 1.01663 0.91535 0.93332 0.96388 0.92760 0.91927 0.89219 0.91169 0.86918 0.91597 0.89154 0.87881 0.91641 0.89126 0.92103 0.91436 0.87944 0.90861 0.92309 0.88963 0.92402 0.92604 0.91544 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.46 8.95 71.98 0.64 -5.81 16 2 C 0.26 13.56 2.63 44.25 0.12 13.68 16 3 H 0.01 0.54 6.90 -2.38 -0.02 0.52 16 4 C -0.54 -28.61 8.37 25.60 0.21 -28.40 16 5 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.09 11.32 21.45 0.24 -52.84 16 8 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 9 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 12 N -0.60 -24.26 2.75 -826.81 -2.28 -26.53 16 13 C 0.08 2.36 9.13 127.77 1.17 3.52 16 14 C 0.52 20.02 4.80 87.66 0.42 20.44 16 15 O -0.59 -28.85 14.36 -3.01 -0.04 -28.89 16 16 C -0.11 -2.96 2.26 -10.35 -0.02 -2.99 16 17 H 0.14 2.72 6.97 -2.39 -0.02 2.71 16 18 C -0.11 -2.62 6.38 31.99 0.20 -2.41 16 19 C 0.11 2.04 6.92 86.86 0.60 2.64 16 20 N -0.60 -14.80 3.08 -918.24 -2.83 -17.63 16 21 C 0.67 17.94 7.71 129.79 1.00 18.94 16 22 O -0.59 -18.41 10.72 19.80 0.21 -18.20 16 23 O -0.36 -8.29 9.42 -55.43 -0.52 -8.81 16 24 C 0.12 2.22 1.13 -10.80 -0.01 2.21 16 25 C -0.18 -3.04 8.37 71.98 0.60 -2.44 16 26 C -0.13 -1.47 8.85 71.98 0.64 -0.84 16 27 C -0.18 -3.46 8.37 71.98 0.60 -2.85 16 28 C 0.18 4.75 3.11 45.34 0.14 4.89 16 29 H 0.10 2.35 7.58 -2.39 -0.02 2.33 16 30 C -0.16 -5.31 8.12 71.98 0.58 -4.72 16 31 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 32 H 0.05 2.12 6.66 -2.39 -0.02 2.10 16 33 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 1.97 5.79 -2.39 -0.01 1.95 16 37 H 0.07 2.17 6.43 -2.39 -0.02 2.15 16 38 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 1.96 7.22 -2.38 -0.02 1.94 16 40 H 0.09 1.56 8.04 -2.39 -0.02 1.54 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.06 1.42 5.88 -2.38 -0.01 1.41 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.06 1.51 5.88 -2.39 -0.01 1.49 16 49 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.06 2.01 7.28 -2.38 -0.02 2.00 16 52 H 0.07 2.25 6.62 -2.39 -0.02 2.23 16 53 H 0.04 1.65 7.45 -2.39 -0.02 1.64 16 Total: -1.00 -72.82 403.20 5.05 -67.77 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.89 Total: 23.40 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 7.35 Total: 17.02 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -4.86 Total: -97.01 kcal Atomic # 8 Polarization: -55.55 SS G_CDS: -0.35 Total: -55.90 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -72.82 5.05 -67.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492307820.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.696 kcal (2) G-P(sol) polarization free energy of solvation -72.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds