Wall clock time and date at job start Sat Apr 11 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47278 * 2 1 4 4 C 1.50694 * 109.47305 * 120.00842 * 2 1 3 5 5 H 1.07998 * 120.00599 * 120.00114 * 4 2 1 6 6 C 1.37880 * 119.99668 * 299.99676 * 4 2 1 7 7 N 1.31515 * 120.00260 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00155 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46819 * 59.99913 * 8 6 4 10 10 H 1.48497 * 109.47173 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47202 * 300.00016 * 8 6 4 12 12 N 1.46504 * 109.46885 * 240.00569 * 2 1 3 13 13 C 1.34774 * 120.00157 * 85.00295 * 12 2 1 14 14 O 1.21280 * 120.00117 * 359.97438 * 13 12 2 15 15 C 1.50698 * 119.99902 * 180.02562 * 13 12 2 16 16 H 1.09005 * 109.46013 * 299.96336 * 15 13 12 17 17 C 1.53034 * 109.46554 * 59.92884 * 15 13 12 18 18 C 1.53189 * 109.31568 * 181.38975 * 17 15 13 19 19 N 1.46928 * 108.77399 * 305.36167 * 18 17 15 20 20 C 1.34777 * 120.63159 * 233.63670 * 19 18 17 21 21 O 1.21511 * 119.99709 * 185.77297 * 20 19 18 22 22 O 1.34637 * 120.00002 * 5.76317 * 20 19 18 23 23 C 1.45199 * 117.00003 * 180.02562 * 22 20 19 24 24 C 1.53000 * 109.47407 * 59.99916 * 23 22 20 25 25 C 1.53000 * 109.47220 * 180.02562 * 23 22 20 26 26 C 1.53006 * 109.46941 * 300.00247 * 23 22 20 27 27 C 1.46930 * 118.73849 * 53.60872 * 19 18 17 28 28 H 1.08993 * 109.58734 * 66.18209 * 27 19 18 29 29 C 1.52997 * 109.70401 * 186.53701 * 27 19 18 30 30 C 1.53042 * 109.45948 * 180.02562 * 15 13 12 31 31 H 1.09002 * 109.47065 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47225 * 299.99698 * 1 2 3 33 33 H 1.09000 * 109.47325 * 59.99561 * 1 2 3 34 34 H 0.97005 * 120.00460 * 179.97438 * 7 6 4 35 35 H 0.97006 * 119.99574 * 264.99817 * 12 2 1 36 36 H 1.09009 * 109.49602 * 301.33507 * 17 15 13 37 37 H 1.08992 * 109.50076 * 61.43117 * 17 15 13 38 38 H 1.08997 * 109.58753 * 185.57822 * 18 17 15 39 39 H 1.09002 * 109.70820 * 65.21765 * 18 17 15 40 40 H 1.09000 * 109.46620 * 59.99975 * 24 23 22 41 41 H 1.08999 * 109.47384 * 180.02562 * 24 23 22 42 42 H 1.08993 * 109.46948 * 300.00566 * 24 23 22 43 43 H 1.09002 * 109.47026 * 59.99889 * 25 23 22 44 44 H 1.08997 * 109.47332 * 179.97438 * 25 23 22 45 45 H 1.08993 * 109.47018 * 299.99719 * 25 23 22 46 46 H 1.09006 * 109.47181 * 60.00259 * 26 23 22 47 47 H 1.08999 * 109.47014 * 179.97438 * 26 23 22 48 48 H 1.09002 * 109.47268 * 300.00088 * 26 23 22 49 49 H 1.09000 * 109.47127 * 173.76540 * 29 27 19 50 50 H 1.09000 * 109.47102 * 293.76339 * 29 27 19 51 51 H 1.09002 * 109.47332 * 53.76708 * 29 27 19 52 52 H 1.09005 * 109.49304 * 298.55878 * 30 15 13 53 53 H 1.08992 * 109.50426 * 58.62053 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9437 0.8300 2.6035 8 14 2.3226 -1.1199 4.0078 9 1 3.8076 -1.1193 4.0075 10 1 1.8270 -0.4203 5.2203 11 1 1.8281 -2.5201 4.0080 12 7 2.0183 -0.6905 -1.1963 13 6 2.1471 -0.0181 -2.3572 14 8 1.8583 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 1 3.6482 -1.1206 -3.3987 17 6 1.7048 -1.8833 -3.9305 18 6 2.2367 -2.6244 -5.1612 19 7 2.4265 -1.6568 -6.2504 20 6 1.8616 -1.8612 -7.4569 21 8 2.1104 -1.1104 -8.3793 22 8 1.0217 -2.8975 -7.6400 23 6 0.4507 -3.0569 -8.9654 24 6 1.5747 -3.2536 -9.9847 25 6 -0.4712 -4.2779 -8.9801 26 6 -0.3535 -1.8068 -9.3280 27 6 3.2435 -0.4616 -5.9992 28 1 4.2786 -0.7562 -5.8270 29 6 3.1711 0.4757 -7.2063 30 6 2.7010 0.2553 -4.7589 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 0.7090 1.1612 3.4845 35 1 2.2490 -1.6317 -1.1527 36 1 1.6505 -2.5715 -3.0868 37 1 0.7111 -1.4898 -4.1440 38 1 1.5185 -3.3844 -5.4687 39 1 3.1893 -3.0972 -4.9223 40 1 2.1476 -4.1442 -9.7264 41 1 1.1460 -3.3729 -10.9798 42 1 2.2311 -2.3836 -9.9741 43 1 -1.2719 -4.1373 -8.2540 44 1 -0.9002 -4.3973 -9.9750 45 1 0.1013 -5.1686 -8.7217 46 1 0.3030 -0.9367 -9.3175 47 1 -0.7818 -1.9263 -10.3232 48 1 -1.1542 -1.6666 -8.6019 49 1 3.6860 1.4079 -6.9738 50 1 3.6480 0.0013 -8.0639 51 1 2.1276 0.6859 -7.4410 52 1 1.6979 0.6292 -4.9649 53 1 3.3549 1.0894 -4.5046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492660546.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:09 Heat of formation + Delta-G solvation = -140.819466 kcal Electronic energy + Delta-G solvation = -31479.806240 eV Core-core repulsion = 27350.737592 eV Total energy + Delta-G solvation = -4129.068649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.12296 -40.94007 -39.41066 -37.52451 -36.68752 -35.24629 -34.49202 -33.75965 -33.32775 -30.76871 -28.64477 -28.31375 -28.24325 -27.34343 -26.27887 -24.19935 -23.59599 -22.55709 -21.55452 -20.87552 -20.24449 -18.86738 -18.54016 -17.62123 -17.50976 -17.21213 -17.12004 -16.44603 -16.07514 -15.93875 -15.53447 -15.47654 -15.07663 -14.84639 -14.76637 -14.47899 -14.37760 -14.16616 -13.65296 -13.53831 -13.50002 -13.18086 -13.06676 -13.02094 -12.96132 -12.84694 -12.81196 -12.73324 -12.70894 -12.60592 -12.40064 -12.25947 -12.15132 -12.07040 -12.00956 -11.75337 -11.63974 -11.28088 -11.10424 -10.68807 -10.54793 -10.30130 -9.73112 -9.66596 -8.16236 -6.34030 1.17043 1.46201 1.48201 1.55972 1.81190 1.86478 2.36275 2.63562 2.84947 3.14137 3.60917 3.73421 3.79394 3.81334 3.85953 3.95858 4.00347 4.15312 4.24862 4.35993 4.52503 4.55300 4.59020 4.65687 4.67857 4.73337 4.77432 4.80988 4.81811 4.87091 4.89342 4.91347 4.92565 4.98364 5.08359 5.11265 5.13260 5.15756 5.29987 5.32809 5.34148 5.39398 5.45041 5.54913 5.63062 5.63602 5.70194 5.92474 6.11088 6.41924 6.74447 7.00384 7.34149 7.36225 7.60501 8.89817 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.002320 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.418095 B =12065.926596 C =12553.958147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H -0.006 1.006 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.270 1.270 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.702 5.702 13 C 0.500 3.500 14 O -0.604 6.604 15 C -0.096 4.096 16 H 0.128 0.872 17 C -0.119 4.119 18 C 0.119 3.881 19 N -0.595 5.595 20 C 0.647 3.353 21 O -0.578 6.578 22 O -0.370 6.370 23 C 0.126 3.874 24 C -0.175 4.175 25 C -0.136 4.136 26 C -0.180 4.180 27 C 0.166 3.834 28 H 0.104 0.896 29 C -0.130 4.130 30 C -0.103 4.103 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.007 0.993 34 H 0.265 0.735 35 H 0.406 0.594 36 H 0.102 0.898 37 H 0.051 0.949 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.088 0.912 48 H 0.053 0.947 49 H 0.058 0.942 50 H 0.075 0.925 51 H 0.043 0.957 52 H 0.046 0.954 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.483 -13.934 -23.468 27.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.012 0.988 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.195 1.195 10 H -0.215 1.215 11 H -0.187 1.187 12 N -0.351 5.351 13 C 0.288 3.712 14 O -0.486 6.486 15 C -0.117 4.117 16 H 0.146 0.854 17 C -0.158 4.158 18 C -0.003 4.003 19 N -0.335 5.335 20 C 0.402 3.598 21 O -0.469 6.469 22 O -0.286 6.286 23 C 0.090 3.910 24 C -0.233 4.233 25 C -0.193 4.193 26 C -0.237 4.237 27 C 0.064 3.936 28 H 0.122 0.878 29 C -0.187 4.187 30 C -0.142 4.142 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.026 0.974 34 H 0.074 0.926 35 H 0.242 0.758 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.118 0.882 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.107 0.893 48 H 0.072 0.928 49 H 0.077 0.923 50 H 0.094 0.906 51 H 0.062 0.938 52 H 0.064 0.936 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.212 -12.816 -23.683 27.019 hybrid contribution -0.100 0.138 1.173 1.185 sum 2.112 -12.677 -22.510 25.921 Atomic orbital electron populations 1.21890 0.98553 0.99428 0.99277 1.18295 0.90925 0.91826 0.82243 0.98778 1.21526 1.32527 1.13578 0.90683 0.90558 1.25833 0.94904 0.95581 1.02451 1.70058 1.37091 1.24016 1.24610 0.85386 0.78671 0.78728 0.77481 1.19487 1.21475 1.18713 1.46259 1.65025 1.14221 1.09598 1.21335 0.77289 0.86949 0.85649 1.90636 1.53163 1.18786 1.86025 1.21341 1.02500 0.96735 0.91135 0.85427 1.21899 0.97882 0.96462 0.99562 1.21870 1.03553 0.90265 0.84619 1.47241 1.51806 1.24838 1.09661 1.18250 0.78028 0.79854 0.83637 1.90934 1.65712 1.48191 1.42092 1.86305 1.57460 1.47357 1.37430 1.22340 0.93434 0.97189 0.78061 1.22431 0.98656 1.02873 0.99307 1.21873 0.98310 0.94916 1.04198 1.22471 1.00138 0.98186 1.02891 1.21310 0.94215 0.83429 0.94627 0.87836 1.22086 1.02002 0.98043 0.96582 1.21749 1.01828 0.97639 0.93000 0.93922 0.91691 0.97351 0.92630 0.75841 0.87920 0.93049 0.87974 0.87901 0.91853 0.89467 0.91692 0.91745 0.88199 0.90949 0.91826 0.89299 0.92833 0.92340 0.90637 0.93829 0.93550 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 9.26 71.98 0.67 -6.07 16 2 C 0.27 13.89 2.56 44.24 0.11 14.01 16 3 H -0.01 -0.35 7.58 -2.38 -0.02 -0.37 16 4 C -0.55 -28.26 8.73 25.60 0.22 -28.04 16 5 H 0.08 3.63 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -52.73 11.32 21.45 0.24 -52.49 16 8 Si 0.97 41.33 29.54 68.60 2.03 43.36 16 9 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 10 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 12 N -0.70 -27.82 4.95 -446.10 -2.21 -30.03 16 13 C 0.50 19.14 7.12 87.66 0.62 19.76 16 14 O -0.60 -29.52 15.64 -3.03 -0.05 -29.57 16 15 C -0.10 -2.41 2.49 -11.51 -0.03 -2.44 16 16 H 0.13 2.45 8.14 -2.38 -0.02 2.43 16 17 C -0.12 -2.44 5.27 30.67 0.16 -2.28 16 18 C 0.12 1.91 6.46 86.36 0.56 2.47 16 19 N -0.59 -12.42 2.97 -925.24 -2.75 -15.17 16 20 C 0.65 15.34 7.54 129.79 0.98 16.32 16 21 O -0.58 -15.35 7.46 19.81 0.15 -15.20 16 22 O -0.37 -7.86 8.53 -55.47 -0.47 -8.33 16 23 C 0.13 2.13 1.13 -10.79 -0.01 2.12 16 24 C -0.18 -2.75 8.37 71.98 0.60 -2.14 16 25 C -0.14 -1.53 8.85 71.98 0.64 -0.89 16 26 C -0.18 -3.24 8.37 71.98 0.60 -2.64 16 27 C 0.17 3.47 3.48 44.97 0.16 3.63 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 29 C -0.13 -2.99 7.61 71.98 0.55 -2.44 16 30 C -0.10 -2.69 3.94 30.67 0.12 -2.57 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 3.63 6.07 -2.39 -0.01 3.61 16 33 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 35 H 0.41 12.99 7.94 -92.70 -0.74 12.25 16 36 H 0.10 1.76 7.53 -2.38 -0.02 1.74 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.10 1.55 6.92 -2.39 -0.02 1.53 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 1.35 5.88 -2.39 -0.01 1.34 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.06 1.49 5.88 -2.38 -0.01 1.48 16 47 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.07 1.80 6.58 -2.39 -0.02 1.79 16 51 H 0.04 1.19 6.93 -2.39 -0.02 1.18 16 52 H 0.05 1.46 8.13 -2.38 -0.02 1.45 16 53 H 0.08 2.16 8.07 -2.39 -0.02 2.15 16 Total: -1.00 -71.29 405.76 3.49 -67.80 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.15 Total: 29.74 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.40 Total: 9.89 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -4.72 Total: -97.69 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -0.37 Total: -53.11 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -71.29 3.49 -67.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492660546.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.018 kcal (2) G-P(sol) polarization free energy of solvation -71.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds