Wall clock time and date at job start Sat Apr 11 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.00038 * 2 1 4 4 C 1.54326 * 109.88496 * 238.90322 * 2 1 3 5 5 H 1.08996 * 110.71802 * 336.93309 * 4 2 1 6 6 C 1.50703 * 110.72060 * 100.02565 * 4 2 1 7 7 O 1.21278 * 119.99985 * 0.02562 * 6 4 2 8 8 N 1.34779 * 119.99944 * 180.02562 * 6 4 2 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47116 * 59.99479 * 16 14 12 18 18 H 1.48490 * 109.47381 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46756 * 300.00079 * 16 14 12 20 20 C 1.55155 * 102.94536 * 218.39052 * 4 2 1 21 21 C 1.54912 * 101.58214 * 35.49890 * 20 4 2 22 22 N 1.47018 * 109.88479 * 121.09486 * 2 1 3 23 23 C 1.34785 * 125.64784 * 298.32453 * 22 2 1 24 24 O 1.21506 * 119.99719 * 359.97438 * 23 22 2 25 25 O 1.34640 * 119.99938 * 179.97438 * 23 22 2 26 26 C 1.45196 * 116.99568 * 180.02562 * 25 23 22 27 27 C 1.52996 * 109.47529 * 60.00039 * 26 25 23 28 28 C 1.53003 * 109.47009 * 180.02562 * 26 25 23 29 29 C 1.52999 * 109.47128 * 299.99420 * 26 25 23 30 30 H 1.08993 * 109.47284 * 181.09487 * 1 2 3 31 31 H 1.09004 * 109.47065 * 301.09954 * 1 2 3 32 32 H 1.09001 * 109.47108 * 61.09805 * 1 2 3 33 33 H 0.97000 * 119.99708 * 359.97438 * 8 6 4 34 34 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 35 35 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 36 36 H 1.09001 * 109.47194 * 299.99493 * 10 9 8 37 37 H 1.08992 * 109.47399 * 59.99666 * 10 9 8 38 38 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 39 39 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 40 40 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 41 41 H 1.09003 * 111.00520 * 153.57143 * 20 4 2 42 42 H 1.09001 * 111.00698 * 277.42732 * 20 4 2 43 43 H 1.09000 * 110.37038 * 204.15323 * 21 20 4 44 44 H 1.09002 * 110.45849 * 81.87391 * 21 20 4 45 45 H 1.09003 * 109.47138 * 59.99743 * 27 26 25 46 46 H 1.09002 * 109.46970 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.46921 * 299.99562 * 27 26 25 48 48 H 1.09002 * 109.47026 * 59.99047 * 28 26 25 49 49 H 1.08998 * 109.47254 * 180.02562 * 28 26 25 50 50 H 1.09003 * 109.46887 * 299.99784 * 28 26 25 51 51 H 1.09004 * 109.47072 * 60.00592 * 29 26 25 52 52 H 1.09002 * 109.47408 * 180.02562 * 29 26 25 53 53 H 1.08998 * 109.47747 * 300.00539 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3040 -1.4436 -1.6201 6 6 2.4670 0.2232 -2.3175 7 8 2.3599 1.4164 -2.1289 8 7 2.9545 -0.2330 -3.4883 9 6 3.3556 0.7126 -4.5329 10 6 3.8691 -0.0596 -5.7498 11 6 4.2887 0.9280 -6.8405 12 6 4.7951 0.1675 -8.0390 13 1 4.8160 -0.9122 -8.0240 14 6 5.2317 0.8501 -9.1545 15 7 5.2057 2.1649 -9.1729 16 14 5.8587 -0.0925 -10.6404 17 1 4.7816 -0.9742 -11.1579 18 1 6.2660 0.8659 -11.6989 19 1 7.0275 -0.9189 -10.2451 20 6 3.2876 -1.5143 -0.6924 21 6 2.8145 -1.8794 0.7368 22 7 2.0300 -0.7140 1.1839 23 6 1.8085 -0.3612 2.4657 24 8 1.1446 0.6246 2.7184 25 8 2.3229 -1.1011 3.4661 26 6 2.0434 -0.6621 4.8216 27 6 0.5310 -0.6526 5.0530 28 6 2.7058 -1.6193 5.8145 29 6 2.5995 0.7486 5.0257 30 1 -0.3633 -1.0274 0.0196 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4967 -0.8997 33 1 3.0404 -1.1874 -3.6389 34 1 4.1459 1.3601 -4.1529 35 1 2.4975 1.3187 -4.8232 36 1 4.7272 -0.6660 -5.4598 37 1 3.0786 -0.7067 -6.1296 38 1 3.4309 1.5347 -7.1307 39 1 5.0794 1.5748 -6.4604 40 1 5.5125 2.6450 -9.9579 41 1 3.4852 -2.4111 -1.2796 42 1 4.1655 -0.8689 -0.6603 43 1 3.6716 -2.0338 1.3923 44 1 2.1891 -2.7718 0.7148 45 1 0.1349 -1.6576 4.9076 46 1 0.3213 -0.3226 6.0705 47 1 0.0595 0.0297 4.3457 48 1 3.7832 -1.6257 5.6494 49 1 2.4955 -1.2901 6.8321 50 1 2.3100 -2.6245 5.6692 51 1 2.1280 1.4309 4.3184 52 1 2.3900 1.0780 6.0434 53 1 3.6769 0.7419 4.8609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492674071.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:16 Heat of formation + Delta-G solvation = -159.031044 kcal Electronic energy + Delta-G solvation = -30086.457191 eV Core-core repulsion = 25956.598829 eV Total energy + Delta-G solvation = -4129.858362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07820 -41.14205 -39.34964 -37.54155 -36.93327 -35.20819 -35.14090 -33.37556 -32.56775 -32.26278 -28.87628 -28.37079 -28.28416 -27.30070 -25.25498 -24.62325 -23.21832 -22.29445 -22.12960 -20.78348 -20.27412 -19.12216 -18.52097 -18.25485 -17.47638 -17.28721 -16.90140 -16.66218 -16.42235 -16.20994 -15.93542 -15.46639 -15.25594 -15.01371 -14.69687 -14.50182 -14.26581 -14.17435 -13.90487 -13.74973 -13.57028 -13.42926 -13.32743 -13.07422 -12.94418 -12.86105 -12.84501 -12.69700 -12.66773 -12.53325 -12.44724 -12.39080 -12.26223 -11.98819 -11.85195 -11.64311 -11.55769 -11.38637 -11.23808 -11.07292 -10.81076 -10.53330 -10.10403 -9.82274 -8.17958 -6.29569 0.97373 1.43137 1.45978 1.53840 1.57390 1.73111 2.17115 2.43937 2.84982 3.15908 3.29151 3.42027 3.71263 3.75598 3.80173 3.94996 4.07621 4.16952 4.18435 4.23568 4.26508 4.33163 4.47402 4.52600 4.57643 4.61111 4.66186 4.70195 4.75608 4.76296 4.84210 4.88542 4.94587 4.96776 4.99973 5.03791 5.10517 5.12039 5.18864 5.20099 5.25829 5.27774 5.35670 5.44576 5.46296 5.54723 5.72786 5.85929 6.23385 6.39437 6.57950 6.88330 7.23597 7.26080 7.40219 8.93785 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.031053 B = 0.001655 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.460922 B =16910.483992 C =17131.089607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.164 3.836 3 H 0.059 0.941 4 C -0.107 4.107 5 H 0.152 0.848 6 C 0.518 3.482 7 O -0.588 6.588 8 N -0.706 5.706 9 C 0.129 3.871 10 C -0.100 4.100 11 C 0.021 3.979 12 C -0.541 4.541 13 H 0.069 0.931 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.288 1.288 19 H -0.265 1.265 20 C -0.115 4.115 21 C 0.103 3.897 22 N -0.603 5.603 23 C 0.662 3.338 24 O -0.592 6.592 25 O -0.362 6.362 26 C 0.125 3.875 27 C -0.178 4.178 28 C -0.133 4.133 29 C -0.181 4.181 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.419 0.581 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.071 0.929 38 H -0.010 1.010 39 H -0.010 1.010 40 H 0.262 0.738 41 H 0.138 0.862 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.101 0.899 50 H 0.073 0.927 51 H 0.056 0.944 52 H 0.091 0.909 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.034 -15.951 29.917 34.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.061 3.939 3 H 0.077 0.923 4 C -0.128 4.128 5 H 0.169 0.831 6 C 0.304 3.696 7 O -0.468 6.468 8 N -0.357 5.357 9 C 0.005 3.995 10 C -0.138 4.138 11 C -0.017 4.017 12 C -0.579 4.579 13 H 0.087 0.913 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.190 1.190 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.153 4.153 21 C -0.018 4.018 22 N -0.345 5.345 23 C 0.417 3.583 24 O -0.483 6.483 25 O -0.276 6.276 26 C 0.088 3.912 27 C -0.235 4.235 28 C -0.190 4.190 29 C -0.238 4.238 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.257 0.743 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.071 0.929 41 H 0.156 0.844 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.119 0.881 50 H 0.092 0.908 51 H 0.075 0.925 52 H 0.109 0.891 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.267 -14.661 30.190 34.339 hybrid contribution 0.318 0.437 -1.108 1.233 sum -6.949 -14.224 29.082 33.111 Atomic orbital electron populations 1.22068 0.93572 1.03161 1.02412 1.21237 0.95192 0.95553 0.81899 0.92282 1.22387 1.01712 0.97015 0.91696 0.83060 1.20765 0.76393 0.89085 0.83316 1.90723 1.56211 1.19152 1.80738 1.45857 1.64127 1.11360 1.14403 1.21227 0.98560 0.92154 0.87575 1.21583 1.00808 0.98317 0.93101 1.18963 0.94723 0.94574 0.93392 1.21671 1.42105 0.93865 1.00240 0.91301 1.26037 0.96118 0.95755 1.02282 1.70116 1.48540 1.08202 1.30723 0.85468 0.79114 0.78175 0.78079 1.18966 1.21396 1.18969 1.22906 0.95042 1.01963 0.95392 1.22606 0.96032 0.87973 0.95228 1.47314 1.54870 1.30683 1.01589 1.17661 0.78431 0.80927 0.81271 1.90893 1.44695 1.29388 1.83367 1.86304 1.71397 1.53729 1.16213 1.22420 0.96472 0.95698 0.76565 1.22456 0.94188 1.02925 1.03959 1.21870 1.01180 0.98690 0.97301 1.22483 1.01185 0.96139 1.04032 0.90227 0.93086 0.91351 0.74291 0.93507 0.93404 0.91047 0.91076 0.99126 0.99143 0.92912 0.84435 0.91245 0.89137 0.88074 0.91623 0.89193 0.92297 0.91271 0.88059 0.90839 0.92489 0.89051 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.09 71.98 0.65 -2.60 16 2 C 0.16 3.69 2.89 45.34 0.13 3.82 16 3 H 0.06 1.85 6.80 -2.39 -0.02 1.83 16 4 C -0.11 -1.73 2.87 -10.35 -0.03 -1.76 16 5 H 0.15 1.43 7.85 -2.39 -0.02 1.41 16 6 C 0.52 13.31 7.13 87.66 0.63 13.94 16 7 O -0.59 -21.63 15.42 -3.02 -0.05 -21.68 16 8 N -0.71 -16.73 5.56 -463.05 -2.57 -19.30 16 9 C 0.13 4.29 5.67 86.38 0.49 4.78 16 10 C -0.10 -3.63 5.27 30.59 0.16 -3.46 16 11 C 0.02 1.08 4.97 29.85 0.15 1.23 16 12 C -0.54 -29.54 9.11 25.60 0.23 -29.31 16 13 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 14 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 15 N -0.94 -56.81 13.29 21.45 0.28 -56.52 16 16 Si 0.97 43.10 29.54 68.60 2.03 45.12 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 20 C -0.11 -1.24 6.52 31.99 0.21 -1.03 16 21 C 0.10 1.20 6.92 86.86 0.60 1.80 16 22 N -0.60 -12.33 3.06 -918.20 -2.81 -15.14 16 23 C 0.66 16.22 7.72 129.79 1.00 17.23 16 24 O -0.59 -17.89 10.93 19.82 0.22 -17.68 16 25 O -0.36 -7.32 9.42 -55.50 -0.52 -7.84 16 26 C 0.12 2.01 1.13 -10.79 -0.01 1.99 16 27 C -0.18 -2.81 8.37 71.98 0.60 -2.20 16 28 C -0.13 -1.22 8.85 71.98 0.64 -0.58 16 29 C -0.18 -3.16 8.37 71.98 0.60 -2.56 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.31 6.91 -2.38 -0.02 1.29 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.42 6.54 8.47 -92.71 -0.79 5.75 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 40 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.07 1.02 8.04 -2.39 -0.02 1.00 16 43 H 0.09 0.99 8.04 -2.39 -0.02 0.97 16 44 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.31 5.88 -2.38 -0.01 1.30 16 48 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.06 1.39 5.88 -2.38 -0.01 1.37 16 52 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 53 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -78.61 421.22 3.18 -75.43 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.09 Total: 16.10 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 6.52 Total: 1.51 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -5.10 Total: -90.97 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -0.35 Total: -47.19 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -78.61 3.18 -75.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492674071.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.601 kcal (2) G-P(sol) polarization free energy of solvation -78.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds