Wall clock time and date at job start Sat Apr 11 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46274 * 2 1 4 4 C 1.53039 * 109.45721 * 240.02905 * 2 1 3 5 5 C 1.53196 * 109.33748 * 178.59861 * 4 2 1 6 6 N 1.46995 * 108.73708 * 54.62190 * 5 4 2 7 7 C 1.34779 * 120.60954 * 126.39083 * 6 5 4 8 8 O 1.21511 * 119.99426 * 180.02562 * 7 6 5 9 9 O 1.34630 * 120.00346 * 0.02562 * 7 6 5 10 10 C 1.45200 * 116.99796 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47436 * 59.99684 * 10 9 7 12 12 C 1.53003 * 109.46970 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.47330 * 299.99480 * 10 9 7 14 14 C 1.46925 * 118.75597 * 306.40484 * 6 5 4 15 15 H 1.08994 * 109.70376 * 173.46782 * 14 6 5 16 16 C 1.50701 * 109.58854 * 293.82776 * 14 6 5 17 17 O 1.21280 * 120.00310 * 19.28503 * 16 14 6 18 18 N 1.34775 * 119.99723 * 199.29061 * 16 14 6 19 19 C 1.46498 * 120.00364 * 359.97438 * 18 16 14 20 20 C 1.46504 * 119.99841 * 179.97438 * 18 16 14 21 21 C 1.50704 * 109.47160 * 89.99651 * 20 18 16 22 22 H 1.08000 * 119.99677 * 0.02562 * 21 20 18 23 23 C 1.37875 * 119.99804 * 179.97438 * 21 20 18 24 24 N 1.31509 * 120.00190 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99791 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47274 * 59.99845 * 25 23 21 27 27 H 1.48497 * 109.47181 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46736 * 300.00005 * 25 23 21 29 29 C 1.53033 * 109.46004 * 119.95865 * 2 1 3 30 30 H 1.08999 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46794 * 299.97314 * 1 2 3 32 32 H 1.08999 * 109.47146 * 59.96636 * 1 2 3 33 33 H 1.09002 * 109.49756 * 298.56584 * 4 2 1 34 34 H 1.09000 * 109.49883 * 58.63327 * 4 2 1 35 35 H 1.09001 * 109.58261 * 174.43824 * 5 4 2 36 36 H 1.08996 * 109.58319 * 294.86146 * 5 4 2 37 37 H 1.09000 * 109.46815 * 59.99950 * 11 10 9 38 38 H 1.09000 * 109.47277 * 179.97438 * 11 10 9 39 39 H 1.08994 * 109.47173 * 299.99950 * 11 10 9 40 40 H 1.09003 * 109.47421 * 59.99754 * 12 10 9 41 41 H 1.09000 * 109.47110 * 179.97438 * 12 10 9 42 42 H 1.09000 * 109.47220 * 300.00013 * 12 10 9 43 43 H 1.09003 * 109.46800 * 59.99710 * 13 10 9 44 44 H 1.08995 * 109.47741 * 180.02562 * 13 10 9 45 45 H 1.09000 * 109.46803 * 300.00665 * 13 10 9 46 46 H 1.08996 * 109.47273 * 89.99554 * 19 18 16 47 47 H 1.08996 * 109.47263 * 210.00483 * 19 18 16 48 48 H 1.09005 * 109.46479 * 330.00076 * 19 18 16 49 49 H 1.09000 * 109.47276 * 209.99731 * 20 18 16 50 50 H 1.08998 * 109.47167 * 329.99853 * 20 18 16 51 51 H 0.96999 * 120.00601 * 180.02562 * 24 23 21 52 52 H 1.08997 * 109.50670 * 301.33526 * 29 2 1 53 53 H 1.08998 * 109.50149 * 61.40361 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5714 -0.6887 -1.2650 6 7 4.0678 -1.2489 0.0001 7 6 4.9614 -2.2578 0.0000 8 8 5.3640 -2.7127 1.0524 9 8 5.4080 -2.7616 -1.1659 10 6 6.3689 -3.8475 -1.0897 11 6 5.7457 -5.0287 -0.3433 12 6 6.7565 -4.2855 -2.5036 13 6 7.6167 -3.3729 -0.3423 14 6 3.5714 -0.6884 1.2643 15 1 3.9417 -1.2822 2.0999 16 6 4.0455 0.7350 1.4066 17 8 4.4168 1.3510 0.4301 18 7 4.0570 1.3233 2.6191 19 6 3.6081 0.5794 3.7986 20 6 4.5184 2.7069 2.7576 21 6 3.3504 3.6448 2.5926 22 1 2.3631 3.2498 2.4039 23 6 3.5421 5.0072 2.6836 24 7 4.7442 5.4881 2.9139 25 14 2.0942 6.1697 2.4798 26 1 1.0765 5.8803 3.5217 27 1 2.5619 7.5721 2.6201 28 1 1.4934 5.9810 1.1350 29 6 2.0398 -0.7206 1.2501 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5135 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6977 -1.7557 -1.2382 34 1 1.6567 -0.2212 -2.1398 35 1 3.9411 -1.2846 -2.0995 36 1 3.9142 0.3408 -1.3683 37 1 4.8568 -5.3668 -0.8758 38 1 6.4669 -5.8440 -0.2865 39 1 5.4692 -4.7170 0.6639 40 1 7.2003 -3.4441 -3.0358 41 1 7.4782 -5.1004 -2.4465 42 1 5.8674 -4.6237 -3.0357 43 1 7.3402 -3.0610 0.6649 44 1 8.3383 -4.1878 -0.2855 45 1 8.0606 -2.5314 -0.8741 46 1 4.4559 0.0596 4.2447 47 1 3.1833 1.2720 4.5251 48 1 2.8509 -0.1471 3.5034 49 1 4.9593 2.8458 3.7447 50 1 5.2655 2.9190 1.9928 51 1 4.8791 6.4465 2.9783 52 1 1.6573 -0.2205 2.1399 53 1 1.6974 -1.7553 1.2388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495491885.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:27 Heat of formation + Delta-G solvation = -140.098464 kcal Electronic energy + Delta-G solvation = -32697.299012 eV Core-core repulsion = 28568.261628 eV Total energy + Delta-G solvation = -4129.037384 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.28020 -41.08444 -38.98745 -37.74930 -36.64517 -35.48360 -34.79181 -34.48481 -32.56791 -29.94059 -29.16002 -28.35324 -28.26921 -27.47339 -25.87159 -24.71698 -24.36423 -22.86986 -21.58384 -20.62731 -19.73828 -18.96672 -18.68379 -17.75392 -17.66583 -17.20459 -17.02552 -16.52655 -16.41986 -15.87194 -15.56670 -15.32626 -15.12408 -14.99817 -14.74159 -14.56142 -14.43289 -14.12974 -13.95695 -13.60034 -13.47897 -13.28009 -13.17486 -13.12233 -13.08540 -12.87498 -12.84434 -12.81272 -12.72146 -12.58600 -12.50971 -12.37727 -12.23732 -12.17149 -11.88197 -11.75368 -11.53933 -11.41947 -11.38463 -11.05850 -10.81417 -10.64381 -9.63866 -9.46188 -8.22180 -6.37172 0.96234 1.36837 1.41169 1.48339 1.66130 1.73631 2.30131 2.44213 2.78502 3.07579 3.51935 3.67776 3.73590 3.77794 3.81963 3.83344 3.96585 4.03088 4.18874 4.30901 4.43454 4.50742 4.61198 4.62602 4.63925 4.65972 4.72590 4.74065 4.77804 4.80018 4.85815 4.87105 4.89601 4.93044 4.95936 4.99317 5.06893 5.11769 5.15176 5.20361 5.29726 5.34729 5.36691 5.40122 5.47154 5.49055 5.55814 5.80868 6.04589 6.26254 6.65879 6.73449 7.19424 7.26420 7.41551 8.85158 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.003411 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.991721 B = 8206.449980 C = 8976.170266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 H 0.039 0.961 4 C -0.114 4.114 5 C 0.105 3.895 6 N -0.575 5.575 7 C 0.654 3.346 8 O -0.591 6.591 9 O -0.363 6.363 10 C 0.121 3.879 11 C -0.175 4.175 12 C -0.134 4.134 13 C -0.182 4.182 14 C 0.148 3.852 15 H 0.124 0.876 16 C 0.493 3.507 17 O -0.578 6.578 18 N -0.606 5.606 19 C 0.071 3.929 20 C 0.263 3.737 21 C -0.537 4.537 22 H 0.058 0.942 23 C 0.007 3.993 24 N -0.931 5.931 25 Si 0.968 3.032 26 H -0.258 1.258 27 H -0.281 1.281 28 H -0.276 1.276 29 C -0.110 4.110 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.051 0.949 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.021 0.979 50 H -0.006 1.006 51 H 0.267 0.733 52 H 0.091 0.909 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.948 -22.855 -7.700 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.120 4.120 3 H 0.057 0.943 4 C -0.152 4.152 5 C -0.017 4.017 6 N -0.314 5.314 7 C 0.409 3.591 8 O -0.482 6.482 9 O -0.278 6.278 10 C 0.085 3.915 11 C -0.232 4.232 12 C -0.191 4.191 13 C -0.239 4.239 14 C 0.041 3.959 15 H 0.142 0.858 16 C 0.280 3.720 17 O -0.458 6.458 18 N -0.337 5.337 19 C -0.071 4.071 20 C 0.141 3.859 21 C -0.576 4.576 22 H 0.076 0.924 23 C -0.192 4.192 24 N -0.571 5.571 25 Si 0.792 3.208 26 H -0.183 1.183 27 H -0.206 1.206 28 H -0.201 1.201 29 C -0.148 4.148 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.112 0.888 49 H 0.039 0.961 50 H 0.012 0.988 51 H 0.075 0.925 52 H 0.109 0.891 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.463 -22.576 -7.885 24.326 hybrid contribution 0.142 1.498 0.232 1.522 sum -4.322 -21.078 -7.653 22.837 Atomic orbital electron populations 1.21726 0.92596 1.02887 1.02050 1.21142 0.97569 0.98450 0.94820 0.94286 1.21893 0.92998 1.01934 0.98332 1.21972 0.95826 0.99698 0.84206 1.46661 1.43112 1.33483 1.08096 1.17990 0.78538 0.79871 0.82697 1.90854 1.61416 1.63497 1.32440 1.86312 1.58726 1.51443 1.31297 1.22492 0.86194 0.83786 0.99011 1.22440 1.02124 0.97276 1.01400 1.21876 1.03075 1.02465 0.91643 1.22490 0.97488 1.02622 1.01310 1.21106 0.97175 0.90264 0.87306 0.85828 1.21380 0.78263 0.89445 0.82933 1.90590 1.49818 1.66757 1.38598 1.48153 1.63240 1.14531 1.07807 1.22058 1.00440 0.96936 0.87678 1.18744 0.94410 0.77425 0.95294 1.21623 0.94861 0.91781 1.49303 0.92390 1.25881 0.98844 0.99962 0.94523 1.70057 1.23191 1.13903 1.49921 0.85462 0.79058 0.77317 0.78967 1.18265 1.20625 1.20100 1.22019 0.89315 1.03632 0.99883 0.90499 0.92923 0.92214 0.89534 0.89284 0.88160 0.92204 0.91435 0.88918 0.91951 0.91857 0.87674 0.90657 0.92395 0.88555 0.93037 0.91807 0.90538 0.88776 0.96084 0.98828 0.92463 0.89081 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.19 71.98 0.66 -2.06 16 2 C -0.10 -2.66 2.52 -10.77 -0.03 -2.68 16 3 H 0.04 1.41 7.10 -2.38 -0.02 1.39 16 4 C -0.11 -2.59 5.36 30.67 0.16 -2.43 16 5 C 0.10 3.06 5.95 86.35 0.51 3.57 16 6 N -0.57 -18.41 2.54 -929.23 -2.36 -20.78 16 7 C 0.65 21.11 7.74 129.79 1.00 22.11 16 8 O -0.59 -20.68 11.30 19.81 0.22 -20.45 16 9 O -0.36 -10.10 8.53 -55.39 -0.47 -10.57 16 10 C 0.12 2.60 1.13 -10.79 -0.01 2.59 16 11 C -0.18 -3.34 8.37 71.98 0.60 -2.74 16 12 C -0.13 -1.91 8.85 71.98 0.64 -1.27 16 13 C -0.18 -4.24 8.37 71.98 0.60 -3.63 16 14 C 0.15 4.80 2.15 44.23 0.10 4.89 16 15 H 0.12 3.86 6.10 -2.39 -0.01 3.85 16 16 C 0.49 21.37 5.98 87.66 0.52 21.90 16 17 O -0.58 -30.13 13.54 -3.03 -0.04 -30.17 16 18 N -0.61 -26.74 2.86 -851.13 -2.43 -29.17 16 19 C 0.07 2.26 9.86 127.77 1.26 3.52 16 20 C 0.26 14.53 5.16 85.63 0.44 14.97 16 21 C -0.54 -30.93 9.39 25.60 0.24 -30.69 16 22 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 23 C 0.01 0.39 5.46 84.66 0.46 0.85 16 24 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 25 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 26 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 28 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 29 C -0.11 -2.76 4.49 30.67 0.14 -2.62 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 35 H 0.10 2.56 6.93 -2.39 -0.02 2.54 16 36 H 0.06 2.23 6.16 -2.39 -0.01 2.21 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 43 H 0.06 1.73 5.88 -2.39 -0.01 1.71 16 44 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 45 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 48 H 0.09 2.32 4.84 -2.38 -0.01 2.31 16 49 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 50 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 51 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 52 H 0.09 2.19 6.44 -2.39 -0.02 2.17 16 53 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -77.17 405.89 5.42 -71.75 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.88 Total: 23.04 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 7.31 Total: 26.28 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -4.51 Total: -106.68 kcal Atomic # 8 Polarization: -60.90 SS G_CDS: -0.29 Total: -61.19 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -77.17 5.42 -71.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495491885.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.346 kcal (2) G-P(sol) polarization free energy of solvation -77.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds