Wall clock time and date at job start Sat Apr 11 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46380 * 2 1 4 4 C 1.53038 * 109.45030 * 119.97096 * 2 1 3 5 5 C 1.53195 * 109.31589 * 181.37429 * 4 2 1 6 6 N 1.47210 * 108.85461 * 305.35220 * 5 4 2 7 7 C 1.34767 * 120.81096 * 233.65421 * 6 5 4 8 8 O 1.21515 * 119.99845 * 179.85796 * 7 6 5 9 9 O 1.34638 * 120.00365 * 359.86260 * 7 6 5 10 10 C 1.45195 * 117.00363 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47387 * 59.99509 * 10 9 7 12 12 C 1.53002 * 109.47534 * 179.97438 * 10 9 7 13 13 C 1.53005 * 109.46954 * 299.99785 * 10 9 7 14 14 C 1.46920 * 118.55483 * 53.51502 * 6 5 4 15 15 H 1.08996 * 109.58738 * 186.60376 * 14 6 5 16 16 C 1.50706 * 109.58893 * 66.32514 * 14 6 5 17 17 O 1.21281 * 119.99660 * 340.27858 * 16 14 6 18 18 N 1.34771 * 120.00094 * 160.28143 * 16 14 6 19 19 C 1.46501 * 120.00308 * 359.97438 * 18 16 14 20 20 C 1.46506 * 119.99594 * 179.97438 * 18 16 14 21 21 C 1.50699 * 109.46928 * 90.00049 * 20 18 16 22 22 H 1.08003 * 119.99963 * 0.02562 * 21 20 18 23 23 C 1.37873 * 119.99865 * 179.97438 * 21 20 18 24 24 N 1.31514 * 120.00518 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99987 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46948 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47174 * 120.00320 * 25 23 21 28 28 H 1.48497 * 109.47378 * 240.00235 * 25 23 21 29 29 C 1.53048 * 109.45871 * 240.03082 * 2 1 3 30 30 H 1.09003 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46787 * 299.96662 * 1 2 3 32 32 H 1.09002 * 109.47248 * 59.96712 * 1 2 3 33 33 H 1.08998 * 109.49688 * 301.32735 * 4 2 1 34 34 H 1.09000 * 109.50013 * 61.38911 * 4 2 1 35 35 H 1.09000 * 109.58171 * 65.14854 * 5 4 2 36 36 H 1.08992 * 109.58857 * 185.57875 * 5 4 2 37 37 H 1.09004 * 109.47393 * 60.00375 * 11 10 9 38 38 H 1.09003 * 109.47506 * 180.02562 * 11 10 9 39 39 H 1.08999 * 109.47328 * 300.00332 * 11 10 9 40 40 H 1.08997 * 109.46996 * 59.99790 * 12 10 9 41 41 H 1.08995 * 109.47486 * 179.97438 * 12 10 9 42 42 H 1.09003 * 109.46750 * 299.99932 * 12 10 9 43 43 H 1.08999 * 109.47058 * 60.00099 * 13 10 9 44 44 H 1.09003 * 109.46928 * 179.97438 * 13 10 9 45 45 H 1.09000 * 109.46711 * 299.99594 * 13 10 9 46 46 H 1.08999 * 109.46532 * 269.99942 * 19 18 16 47 47 H 1.09000 * 109.46877 * 29.99967 * 19 18 16 48 48 H 1.09000 * 109.47251 * 150.00072 * 19 18 16 49 49 H 1.09004 * 109.47073 * 209.99877 * 20 18 16 50 50 H 1.09000 * 109.47212 * 329.99960 * 20 18 16 51 51 H 0.96992 * 120.00316 * 179.97438 * 24 23 21 52 52 H 1.08996 * 109.49510 * 58.67543 * 29 2 1 53 53 H 1.09000 * 109.51896 * 298.59940 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2501 5 6 3.5711 -0.6891 1.2644 6 7 4.0705 -1.2505 -0.0015 7 6 4.9639 -2.2595 -0.0043 8 8 5.3643 -2.7135 -1.0580 9 8 5.4128 -2.7646 1.1602 10 6 6.3743 -3.8496 1.0811 11 6 7.6205 -3.3734 0.3320 12 6 6.7656 -4.2884 2.4937 13 6 5.7505 -5.0304 0.3343 14 6 3.5713 -0.6890 -1.2641 15 1 3.9415 -1.2829 -2.0997 16 6 4.0458 0.7343 -1.4067 17 8 4.4123 1.3520 -0.4294 18 7 4.0627 1.3206 -2.6200 19 6 3.6205 0.5742 -3.8005 20 6 4.5235 2.7044 -2.7584 21 6 6.0091 2.7163 -3.0108 22 1 6.5554 1.7861 -3.0634 23 6 6.6708 3.9146 -3.1757 24 7 6.0055 5.0473 -3.1123 25 14 8.5125 3.9294 -3.4879 26 1 9.0215 2.5346 -3.5130 27 1 8.7879 4.5799 -4.7941 28 1 9.1920 4.6854 -2.4054 29 6 2.0398 -0.7209 -1.2501 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8904 32 1 -0.3634 0.5143 -0.8897 33 1 1.6570 -0.2208 2.1398 34 1 1.6968 -1.7555 1.2386 35 1 3.9142 0.3403 1.3675 36 1 3.9412 -1.2851 2.0985 37 1 8.0650 -2.5322 0.8641 38 1 8.3421 -4.1881 0.2723 39 1 7.3421 -3.0606 -0.6743 40 1 5.8781 -4.6276 3.0277 41 1 7.4871 -5.1032 2.4344 42 1 7.2102 -3.4470 3.0254 43 1 5.4722 -4.7176 -0.6720 44 1 6.4725 -5.8448 0.2746 45 1 4.8628 -5.3697 0.8680 46 1 4.4712 0.0546 -4.2415 47 1 2.8626 -0.1525 -3.5080 48 1 3.1987 1.2653 -4.5304 49 1 4.0090 3.1767 -3.5953 50 1 4.3062 3.2531 -1.8420 51 1 6.4711 5.8903 -3.2279 52 1 1.6574 -0.2207 -2.1398 53 1 1.6975 -1.7556 -1.2389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495491888.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:38 Heat of formation + Delta-G solvation = -140.812268 kcal Electronic energy + Delta-G solvation = -32712.450909 eV Core-core repulsion = 28583.382572 eV Total energy + Delta-G solvation = -4129.068337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.27525 -41.08943 -38.98444 -37.75816 -36.64499 -35.48924 -34.82353 -34.49154 -32.56503 -29.94639 -29.15412 -28.37403 -28.28398 -27.46938 -25.92102 -24.71572 -24.34587 -22.87108 -21.58251 -20.63897 -19.74137 -18.97470 -18.74466 -17.76476 -17.67184 -17.19212 -17.05646 -16.60968 -16.30953 -15.92185 -15.58153 -15.26884 -15.18626 -14.99706 -14.73049 -14.56026 -14.44290 -14.21811 -13.91266 -13.62705 -13.47191 -13.29098 -13.21034 -13.15494 -13.03859 -12.90089 -12.86289 -12.83272 -12.72008 -12.60188 -12.52898 -12.40119 -12.27396 -12.20541 -11.88369 -11.74839 -11.53358 -11.41821 -11.39844 -11.06977 -10.82213 -10.67911 -9.65706 -9.45640 -8.26803 -6.40840 0.94916 1.30957 1.32983 1.45035 1.64771 1.76115 2.28045 2.41522 2.77985 3.02366 3.51265 3.67519 3.73606 3.76545 3.80376 3.84287 3.94876 4.03128 4.19499 4.30563 4.43739 4.49496 4.59639 4.61509 4.63490 4.66091 4.71994 4.75504 4.75892 4.81205 4.84158 4.88073 4.88494 4.91435 4.97508 5.00911 5.07391 5.12202 5.14509 5.18622 5.27898 5.33804 5.37858 5.39609 5.46737 5.49819 5.52965 5.79635 6.02762 6.25636 6.63476 6.71312 7.18974 7.23683 7.40209 8.80155 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009269 B = 0.004302 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.958342 B = 6507.697473 C = 8521.795918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 H 0.043 0.957 4 C -0.114 4.114 5 C 0.104 3.896 6 N -0.575 5.575 7 C 0.652 3.348 8 O -0.592 6.592 9 O -0.363 6.363 10 C 0.122 3.878 11 C -0.183 4.183 12 C -0.133 4.133 13 C -0.175 4.175 14 C 0.146 3.854 15 H 0.118 0.882 16 C 0.493 3.507 17 O -0.577 6.577 18 N -0.606 5.606 19 C 0.073 3.927 20 C 0.263 3.737 21 C -0.544 4.544 22 H 0.042 0.958 23 C 0.013 3.987 24 N -0.924 5.924 25 Si 0.962 3.038 26 H -0.275 1.275 27 H -0.264 1.264 28 H -0.279 1.279 29 C -0.110 4.110 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.099 0.901 48 H 0.082 0.918 49 H 0.029 0.971 50 H 0.002 0.998 51 H 0.268 0.732 52 H 0.096 0.904 53 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.301 -21.039 8.419 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.118 4.118 3 H 0.061 0.939 4 C -0.152 4.152 5 C -0.018 4.018 6 N -0.314 5.314 7 C 0.407 3.593 8 O -0.483 6.483 9 O -0.277 6.277 10 C 0.086 3.914 11 C -0.240 4.240 12 C -0.190 4.190 13 C -0.232 4.232 14 C 0.039 3.961 15 H 0.136 0.864 16 C 0.280 3.720 17 O -0.457 6.457 18 N -0.337 5.337 19 C -0.069 4.069 20 C 0.142 3.858 21 C -0.583 4.583 22 H 0.060 0.940 23 C -0.186 4.186 24 N -0.563 5.563 25 Si 0.786 3.214 26 H -0.200 1.200 27 H -0.189 1.189 28 H -0.204 1.204 29 C -0.148 4.148 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.117 0.883 48 H 0.100 0.900 49 H 0.047 0.953 50 H 0.020 0.980 51 H 0.077 0.923 52 H 0.115 0.885 53 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.918 -20.723 8.622 24.152 hybrid contribution 1.493 0.936 -0.453 1.819 sum -7.425 -19.787 8.169 22.658 Atomic orbital electron populations 1.21730 0.92286 1.02918 1.02289 1.21147 0.97683 0.98467 0.94513 0.93890 1.21899 0.92635 1.02024 0.98611 1.22033 0.96045 0.99673 0.84027 1.46705 1.43035 1.33420 1.08253 1.18031 0.78590 0.79982 0.82675 1.90863 1.61471 1.63605 1.32408 1.86303 1.58617 1.51485 1.31338 1.22480 0.86065 0.83825 0.99038 1.22496 0.97709 1.02562 1.01239 1.21872 1.03120 1.02431 0.91567 1.22438 1.02170 0.97228 1.01362 1.21133 0.97485 0.90211 0.87247 0.86435 1.21376 0.78135 0.89485 0.82971 1.90586 1.49857 1.66363 1.38878 1.48150 1.62935 1.15082 1.07574 1.22044 1.00017 0.97194 0.87634 1.18771 0.93489 0.77870 0.95651 1.21676 0.94680 0.92432 1.49467 0.93981 1.25751 1.03228 0.94894 0.94732 1.70027 1.37833 0.98009 1.50450 0.85460 0.79496 0.78009 0.78403 1.20015 1.18894 1.20431 1.22044 0.88781 1.03828 1.00164 0.90797 0.92038 0.92453 0.89012 0.89699 0.92099 0.88443 0.93199 0.88515 0.92669 0.90469 0.87676 0.91908 0.92064 0.88924 0.91222 0.93169 0.88313 0.89975 0.95317 0.98009 0.92272 0.88534 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.19 71.98 0.66 -1.59 16 2 C -0.10 -2.31 2.52 -10.77 -0.03 -2.34 16 3 H 0.04 1.36 7.09 -2.39 -0.02 1.34 16 4 C -0.11 -2.41 5.36 30.67 0.16 -2.25 16 5 C 0.10 3.00 5.96 86.31 0.51 3.51 16 6 N -0.58 -18.85 2.56 -928.72 -2.37 -21.23 16 7 C 0.65 22.19 7.74 129.79 1.00 23.19 16 8 O -0.59 -22.16 11.29 19.79 0.22 -21.94 16 9 O -0.36 -10.63 8.55 -55.48 -0.47 -11.10 16 10 C 0.12 2.82 1.13 -10.79 -0.01 2.81 16 11 C -0.18 -4.73 8.37 71.98 0.60 -4.13 16 12 C -0.13 -2.06 8.85 71.98 0.64 -1.42 16 13 C -0.17 -3.57 8.37 71.98 0.60 -2.96 16 14 C 0.15 4.76 2.14 44.23 0.09 4.85 16 15 H 0.12 3.86 6.08 -2.39 -0.01 3.85 16 16 C 0.49 21.42 5.99 87.66 0.52 21.94 16 17 O -0.58 -30.02 13.52 -3.03 -0.04 -30.06 16 18 N -0.61 -26.77 2.86 -851.11 -2.43 -29.20 16 19 C 0.07 2.34 9.91 127.77 1.27 3.61 16 20 C 0.26 14.52 5.20 85.63 0.45 14.96 16 21 C -0.54 -32.72 9.39 25.60 0.24 -32.48 16 22 H 0.04 2.59 7.81 -2.91 -0.02 2.57 16 23 C 0.01 0.79 5.46 84.65 0.46 1.25 16 24 N -0.92 -56.49 13.29 21.45 0.28 -56.20 16 25 Si 0.96 46.66 29.54 68.60 2.03 48.69 16 26 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 27 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 29 C -0.11 -2.54 4.49 30.67 0.14 -2.40 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 2.23 6.15 -2.39 -0.01 2.21 16 36 H 0.10 2.50 6.95 -2.39 -0.02 2.49 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.82 5.88 -2.39 -0.01 1.81 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.62 5.88 -2.39 -0.01 1.61 16 44 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.10 2.31 4.87 -2.39 -0.01 2.30 16 48 H 0.08 2.43 7.89 -2.39 -0.02 2.41 16 49 H 0.03 1.58 7.89 -2.38 -0.02 1.56 16 50 H 0.00 0.11 7.42 -2.39 -0.02 0.10 16 51 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 52 H 0.10 1.99 6.48 -2.39 -0.02 1.98 16 53 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -79.30 405.68 5.42 -73.88 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.88 Total: 20.59 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: 7.32 Total: 26.57 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -4.52 Total: -106.63 kcal Atomic # 8 Polarization: -62.81 SS G_CDS: -0.29 Total: -63.10 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -79.30 5.42 -73.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495491888.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.930 kcal (2) G-P(sol) polarization free energy of solvation -79.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds