Wall clock time and date at job start Sat Apr 11 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47112 * 2 1 4 4 C 1.50700 * 109.46816 * 119.99610 * 2 1 3 5 5 H 1.07997 * 120.00304 * 119.99830 * 4 2 1 6 6 C 1.37882 * 120.00117 * 300.00292 * 4 2 1 7 7 N 1.31513 * 119.99655 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00265 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47171 * 89.99545 * 8 6 4 10 10 H 1.48504 * 109.47270 * 209.99965 * 8 6 4 11 11 H 1.48498 * 109.47029 * 329.99678 * 8 6 4 12 12 N 1.46492 * 109.47653 * 239.99383 * 2 1 3 13 13 C 1.34776 * 119.99780 * 85.00034 * 12 2 1 14 14 O 1.21283 * 120.00381 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00101 * 180.02562 * 13 12 2 16 16 H 1.09010 * 109.69929 * 320.35258 * 15 13 12 17 17 C 1.52762 * 109.43561 * 80.51876 * 15 13 12 18 18 C 1.53036 * 109.37947 * 65.42466 * 17 15 13 19 19 H 1.08997 * 109.45044 * 301.22734 * 18 17 15 20 20 C 1.52998 * 109.45877 * 181.26331 * 18 17 15 21 21 C 1.53039 * 109.54006 * 61.24280 * 18 17 15 22 22 C 1.53188 * 109.31273 * 298.63496 * 21 18 17 23 23 N 1.46923 * 109.58795 * 200.00219 * 15 13 12 24 24 C 1.34780 * 120.63406 * 113.84072 * 23 15 13 25 25 O 1.21513 * 119.99577 * 359.72089 * 24 23 15 26 26 O 1.34628 * 120.00286 * 179.71826 * 24 23 15 27 27 C 1.45202 * 117.00407 * 179.97438 * 26 24 23 28 28 C 1.53006 * 109.46867 * 59.99955 * 27 26 24 29 29 C 1.52999 * 109.47019 * 300.00782 * 27 26 24 30 30 C 1.52997 * 109.47464 * 180.02562 * 27 26 24 31 31 H 1.09002 * 109.47493 * 300.00464 * 1 2 3 32 32 H 1.09000 * 109.46794 * 60.00730 * 1 2 3 33 33 H 1.08996 * 109.47112 * 179.97438 * 1 2 3 34 34 H 0.97003 * 119.99786 * 180.02562 * 7 6 4 35 35 H 0.96998 * 120.00267 * 265.00448 * 12 2 1 36 36 H 1.09002 * 109.56486 * 305.39047 * 17 15 13 37 37 H 1.09003 * 109.38696 * 185.35230 * 17 15 13 38 38 H 1.09006 * 109.47094 * 299.93394 * 20 18 17 39 39 H 1.08998 * 109.47729 * 59.92967 * 20 18 17 40 40 H 1.09000 * 109.47612 * 179.97438 * 20 18 17 41 41 H 1.08998 * 109.49988 * 178.67737 * 21 18 17 42 42 H 1.09005 * 109.52068 * 58.60184 * 21 18 17 43 43 H 1.09005 * 109.58629 * 294.84442 * 22 21 18 44 44 H 1.08999 * 109.70652 * 174.49376 * 22 21 18 45 45 H 1.09001 * 109.46801 * 300.00397 * 28 27 26 46 46 H 1.09001 * 109.46998 * 59.99993 * 28 27 26 47 47 H 1.09000 * 109.47050 * 180.02562 * 28 27 26 48 48 H 1.09000 * 109.47160 * 179.97438 * 29 27 26 49 49 H 1.09002 * 109.46719 * 299.99410 * 29 27 26 50 50 H 1.08993 * 109.47839 * 59.99251 * 29 27 26 51 51 H 1.09001 * 109.47375 * 300.00043 * 30 27 26 52 52 H 1.09002 * 109.46777 * 60.00599 * 30 27 26 53 53 H 1.09000 * 109.47140 * 180.02562 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3222 -1.1193 4.0081 9 1 3.6302 -0.5437 4.4120 10 1 1.3441 -0.9487 5.1124 11 1 2.4877 -2.5651 3.7125 12 7 2.0184 -0.6907 -1.1960 13 6 2.1472 -0.0184 -2.3570 14 8 1.8592 1.1585 -2.4115 15 6 2.6491 -0.7290 -3.5875 16 1 3.4514 -1.4146 -3.3144 17 6 1.5032 -1.5127 -4.2249 18 6 0.4420 -0.5354 -4.7356 19 1 0.0763 0.0695 -3.9059 20 6 -0.7213 -1.3196 -5.3462 21 6 1.0561 0.3769 -5.7999 22 6 2.1979 1.1856 -5.1762 23 7 3.1513 0.2562 -4.5549 24 6 4.4608 0.3030 -4.8706 25 8 5.2392 -0.4712 -4.3498 26 8 4.9063 1.2073 -5.7629 27 6 6.3288 1.2005 -6.0543 28 6 6.7273 -0.1647 -6.6186 29 6 7.1138 1.4699 -4.7690 30 6 6.6441 2.2894 -7.0817 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 0.7093 1.1620 3.4843 35 1 2.2491 -1.6318 -1.1524 36 1 1.0591 -2.1775 -3.4840 37 1 1.8869 -2.1013 -5.0583 38 1 -0.3559 -1.9243 -6.1763 39 1 -1.1589 -1.9694 -4.5884 40 1 -1.4775 -0.6238 -5.7096 41 1 0.2939 1.0570 -6.1800 42 1 1.4443 -0.2288 -6.6189 43 1 1.7973 1.8589 -4.4184 44 1 2.7031 1.7647 -5.9492 45 1 6.5026 -0.9401 -5.8862 46 1 6.1679 -0.3567 -7.5342 47 1 7.7952 -0.1699 -6.8369 48 1 8.1817 1.4644 -4.9876 49 1 6.8299 2.4424 -4.3669 50 1 6.8893 0.6945 -4.0367 51 1 6.0848 2.0979 -7.9975 52 1 6.3604 3.2619 -6.6792 53 1 7.7119 2.2840 -7.3007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495493351.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:46 Heat of formation + Delta-G solvation = -151.518078 kcal Electronic energy + Delta-G solvation = -32314.873639 eV Core-core repulsion = 28185.341063 eV Total energy + Delta-G solvation = -4129.532576 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.25013 -41.02665 -39.02343 -37.76235 -36.65481 -35.50492 -34.49205 -34.40955 -32.67371 -30.62643 -29.27966 -28.36351 -28.27864 -27.34986 -25.67095 -24.41388 -23.82510 -22.46263 -21.69263 -20.95147 -20.30320 -19.10889 -18.65213 -17.72644 -17.51182 -17.16408 -17.07553 -16.44134 -16.28117 -15.85605 -15.53570 -15.33993 -15.01583 -14.94516 -14.87029 -14.47199 -14.42720 -14.32641 -13.85457 -13.61213 -13.26757 -13.17429 -13.08912 -13.01010 -12.91011 -12.87004 -12.84912 -12.81162 -12.68726 -12.60814 -12.38582 -12.27534 -12.23854 -12.14167 -11.88098 -11.55145 -11.43040 -11.39416 -11.12989 -11.06748 -10.87803 -10.61941 -9.77898 -9.64255 -8.19369 -6.36770 0.95750 1.43122 1.43832 1.54485 1.65497 1.75608 2.33785 2.57921 2.79373 3.10897 3.68484 3.73307 3.75262 3.77549 3.81200 3.90843 3.95638 4.05786 4.21366 4.44056 4.50658 4.61345 4.63216 4.66696 4.72724 4.75895 4.76560 4.76776 4.82149 4.84769 4.88904 4.90129 4.93191 5.00477 5.06358 5.08600 5.12540 5.15410 5.28802 5.33931 5.37016 5.39707 5.42427 5.47200 5.50753 5.59837 5.67740 5.89170 6.09044 6.26199 6.70528 6.89896 7.20144 7.29879 7.49237 8.86674 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.003442 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.986509 B = 8133.383574 C = 9758.235541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.275 3.725 3 H -0.006 1.006 4 C -0.549 4.549 5 H 0.071 0.929 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.971 3.029 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.259 1.259 12 N -0.702 5.702 13 C 0.495 3.505 14 O -0.581 6.581 15 C 0.145 3.855 16 H 0.119 0.881 17 C -0.109 4.109 18 C -0.099 4.099 19 H 0.045 0.955 20 C -0.136 4.136 21 C -0.115 4.115 22 C 0.105 3.895 23 N -0.574 5.574 24 C 0.652 3.348 25 O -0.592 6.592 26 O -0.362 6.362 27 C 0.122 3.878 28 C -0.176 4.176 29 C -0.183 4.183 30 C -0.133 4.133 31 H 0.065 0.935 32 H 0.014 0.986 33 H 0.042 0.958 34 H 0.266 0.734 35 H 0.403 0.597 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.098 0.902 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.051 0.949 50 H 0.055 0.945 51 H 0.075 0.925 52 H 0.063 0.937 53 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.311 -3.808 -22.991 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.171 3.829 3 H 0.012 0.988 4 C -0.587 4.587 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.795 3.205 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.183 1.183 12 N -0.351 5.351 13 C 0.280 3.720 14 O -0.461 6.461 15 C 0.038 3.962 16 H 0.137 0.863 17 C -0.147 4.147 18 C -0.118 4.118 19 H 0.064 0.936 20 C -0.193 4.193 21 C -0.153 4.153 22 C -0.017 4.017 23 N -0.313 5.313 24 C 0.407 3.593 25 O -0.484 6.484 26 O -0.277 6.277 27 C 0.086 3.914 28 C -0.233 4.233 29 C -0.240 4.240 30 C -0.190 4.190 31 H 0.084 0.916 32 H 0.033 0.967 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.238 0.762 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.116 0.884 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.111 0.889 48 H 0.114 0.886 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.094 0.906 52 H 0.082 0.918 53 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.330 -3.044 -22.775 23.587 hybrid contribution 0.346 -0.242 1.611 1.665 sum 5.675 -3.286 -21.164 22.157 Atomic orbital electron populations 1.21843 0.97792 0.99547 0.99562 1.18310 0.91366 0.91553 0.81638 0.98832 1.21553 1.32598 1.13596 0.90937 0.91103 1.25779 0.94833 0.95598 1.02247 1.70050 1.36935 1.23858 1.24608 0.85367 0.77735 0.79265 0.78119 1.20612 1.20688 1.18317 1.46291 1.65065 1.14198 1.09538 1.21376 0.77788 0.87418 0.85427 1.90588 1.52378 1.17646 1.85499 1.21021 0.99457 0.89631 0.86050 0.86295 1.21896 0.93468 0.97357 1.01977 1.21139 0.95913 0.96618 0.98091 0.93606 1.21732 0.96684 0.99943 1.00979 1.21900 0.96908 0.98754 0.97704 1.21974 0.90528 0.91703 0.97491 1.46630 1.04372 1.37040 1.43253 1.18036 0.82922 0.79742 0.78580 1.90870 1.54867 1.45066 1.57571 1.86303 1.30137 1.54101 1.57162 1.22483 0.74338 0.98502 0.96111 1.22444 1.03514 0.95826 1.01498 1.22495 1.01894 1.01912 0.97691 1.21871 1.03796 0.96237 0.97097 0.91650 0.96702 0.93907 0.92530 0.76175 0.88899 0.88117 0.90972 0.92666 0.91994 0.89043 0.89927 0.91828 0.88402 0.92091 0.91348 0.88945 0.88591 0.92948 0.92554 0.90586 0.91767 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.48 9.26 71.98 0.67 -5.82 16 2 C 0.27 14.45 2.56 44.25 0.11 14.56 16 3 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 4 C -0.55 -29.62 8.73 25.60 0.22 -29.39 16 5 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -53.08 11.32 21.45 0.24 -52.83 16 8 Si 0.97 42.70 29.54 68.60 2.03 44.72 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 12 N -0.70 -29.87 5.07 -446.11 -2.26 -32.13 16 13 C 0.49 20.19 6.10 87.66 0.54 20.72 16 14 O -0.58 -28.08 13.60 -3.04 -0.04 -28.12 16 15 C 0.15 4.53 2.99 44.09 0.13 4.67 16 16 H 0.12 3.72 7.00 -2.38 -0.02 3.70 16 17 C -0.11 -2.52 4.80 30.53 0.15 -2.38 16 18 C -0.10 -2.29 2.52 -10.77 -0.03 -2.32 16 19 H 0.05 1.42 7.07 -2.39 -0.02 1.40 16 20 C -0.14 -2.37 9.19 71.98 0.66 -1.70 16 21 C -0.11 -2.38 5.36 30.67 0.16 -2.21 16 22 C 0.10 2.87 5.95 86.36 0.51 3.38 16 23 N -0.57 -17.88 2.55 -930.22 -2.37 -20.26 16 24 C 0.65 21.15 7.74 129.79 1.00 22.15 16 25 O -0.59 -21.33 11.29 19.80 0.22 -21.11 16 26 O -0.36 -10.09 8.52 -55.38 -0.47 -10.56 16 27 C 0.12 2.67 1.13 -10.79 -0.01 2.65 16 28 C -0.18 -3.46 8.37 71.98 0.60 -2.86 16 29 C -0.18 -4.41 8.37 71.98 0.60 -3.81 16 30 C -0.13 -1.91 8.85 71.98 0.64 -1.28 16 31 H 0.06 3.63 6.07 -2.39 -0.01 3.61 16 32 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.40 14.67 8.54 -92.71 -0.79 13.88 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.06 2.19 6.17 -2.38 -0.01 2.17 16 44 H 0.10 2.38 6.92 -2.39 -0.02 2.36 16 45 H 0.06 1.58 5.88 -2.39 -0.01 1.56 16 46 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 49 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.06 1.75 5.88 -2.39 -0.01 1.74 16 51 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -71.37 407.89 3.86 -67.51 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: 0.10 Total: 35.09 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 6.41 Total: 17.68 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -4.39 Total: -105.22 kcal Atomic # 8 Polarization: -59.49 SS G_CDS: -0.29 Total: -59.78 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -71.37 3.86 -67.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495493351.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.010 kcal (2) G-P(sol) polarization free energy of solvation -71.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds