Wall clock time and date at job start Sat Apr 11 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46640 * 2 1 4 4 C 1.50701 * 109.46921 * 240.00046 * 2 1 3 5 5 H 1.08002 * 120.00258 * 274.99625 * 4 2 1 6 6 C 1.37884 * 120.00120 * 95.00144 * 4 2 1 7 7 N 1.31505 * 119.99965 * 184.91245 * 6 4 2 8 8 Si 1.86802 * 119.99826 * 4.91268 * 6 4 2 9 9 H 1.48504 * 109.46936 * 84.83366 * 8 6 4 10 10 H 1.48499 * 109.46887 * 204.83265 * 8 6 4 11 11 H 1.48496 * 109.47224 * 324.83342 * 8 6 4 12 12 N 1.46494 * 109.47363 * 119.99762 * 2 1 3 13 13 C 1.34775 * 120.00474 * 275.00142 * 12 2 1 14 14 O 1.21285 * 119.99515 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00472 * 179.97438 * 13 12 2 16 16 H 1.09010 * 109.58437 * 319.71700 * 15 13 12 17 17 C 1.53184 * 109.58549 * 80.00029 * 15 13 12 18 18 C 1.53036 * 109.31404 * 65.15527 * 17 15 13 19 19 H 1.09006 * 109.46006 * 301.35661 * 18 17 15 20 20 C 1.52998 * 109.46202 * 181.38867 * 18 17 15 21 21 C 1.53036 * 109.53743 * 61.36353 * 18 17 15 22 22 C 1.53187 * 109.31316 * 298.63193 * 21 18 17 23 23 N 1.46922 * 109.58742 * 199.29428 * 15 13 12 24 24 C 1.34773 * 120.63693 * 113.82120 * 23 15 13 25 25 O 1.21518 * 119.99680 * 0.02562 * 24 23 15 26 26 O 1.34628 * 120.00374 * 179.97438 * 24 23 15 27 27 C 1.45197 * 117.00381 * 179.97438 * 26 24 23 28 28 C 1.53001 * 109.46753 * 60.00286 * 27 26 24 29 29 C 1.52998 * 109.47586 * 180.02562 * 27 26 24 30 30 C 1.53001 * 109.47371 * 300.00910 * 27 26 24 31 31 H 1.09006 * 109.46962 * 175.03937 * 1 2 3 32 32 H 1.08996 * 109.47356 * 295.03097 * 1 2 3 33 33 H 1.08998 * 109.47235 * 55.04312 * 1 2 3 34 34 H 0.96999 * 120.00415 * 179.97438 * 7 6 4 35 35 H 0.97007 * 119.99983 * 95.27136 * 12 2 1 36 36 H 1.09004 * 109.49853 * 185.10496 * 17 15 13 37 37 H 1.09007 * 109.49982 * 305.16967 * 17 15 13 38 38 H 1.08999 * 109.47790 * 59.99795 * 20 18 17 39 39 H 1.09003 * 109.47533 * 180.02562 * 20 18 17 40 40 H 1.09007 * 109.46923 * 299.99382 * 20 18 17 41 41 H 1.09001 * 109.49922 * 58.59270 * 21 18 17 42 42 H 1.09005 * 109.49654 * 178.68324 * 21 18 17 43 43 H 1.08998 * 109.58646 * 174.42134 * 22 21 18 44 44 H 1.08999 * 109.59411 * 294.70844 * 22 21 18 45 45 H 1.09001 * 109.47292 * 60.00909 * 28 27 26 46 46 H 1.09009 * 109.47038 * 180.02562 * 28 27 26 47 47 H 1.08995 * 109.47767 * 299.99983 * 28 27 26 48 48 H 1.08997 * 109.47242 * 60.00058 * 29 27 26 49 49 H 1.09000 * 109.47356 * 180.02562 * 29 27 26 50 50 H 1.09003 * 109.46731 * 300.00009 * 29 27 26 51 51 H 1.09002 * 109.47582 * 59.99440 * 30 27 26 52 52 H 1.09000 * 109.47124 * 179.97438 * 30 27 26 53 53 H 1.08997 * 109.46628 * 299.99434 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7855 -1.2291 6 6 2.3603 0.0121 -2.3581 7 7 2.7059 -0.6131 -3.4622 8 14 2.3135 1.8791 -2.3175 9 1 3.5991 2.3949 -1.7822 10 1 2.1057 2.3991 -3.6929 11 1 1.1986 2.3275 -1.4451 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6490 -0.7287 3.5877 16 1 2.2111 -1.7257 3.6381 17 6 4.1756 -0.8406 3.5293 18 6 4.7887 0.5600 3.5956 19 1 4.4150 1.1597 2.7656 20 6 6.3122 0.4545 3.5028 21 6 4.4034 1.2253 4.9189 22 6 2.8793 1.3607 4.9929 23 7 2.2763 0.0370 4.7849 24 6 1.3981 -0.4651 5.6755 25 8 0.9067 -1.5613 5.4923 26 8 1.0660 0.2473 6.7685 27 6 0.1138 -0.3554 7.6841 28 6 0.6785 -1.6764 8.2103 29 6 -0.1385 0.5950 8.8562 30 6 -1.2024 -0.6198 6.9501 31 1 -0.3633 -1.0239 -0.0889 32 1 -0.3634 0.4348 0.9311 33 1 -0.3633 0.5888 -0.8422 34 1 2.9363 -0.1049 -4.2556 35 1 2.2529 -1.6308 1.1516 36 1 4.5295 -1.4329 4.3732 37 1 4.4697 -1.3232 2.5973 38 1 6.5870 -0.0181 2.5598 39 1 6.7491 1.4520 3.5504 40 1 6.6861 -0.1454 4.3325 41 1 4.7551 0.6135 5.7497 42 1 4.8596 2.2136 4.9756 43 1 2.5935 1.7424 5.9731 44 1 2.5353 2.0469 4.2191 45 1 1.6161 -1.4881 8.7334 46 1 -0.0366 -2.1292 8.8974 47 1 0.8579 -2.3534 7.3752 48 1 -0.5409 1.5359 8.4810 49 1 -0.8530 0.1423 9.5438 50 1 0.7991 0.7836 9.3793 51 1 -1.0230 -1.2967 6.1148 52 1 -1.9170 -1.0727 7.6373 53 1 -1.6046 0.3213 6.5751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495493352.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:49 Heat of formation + Delta-G solvation = -152.470756 kcal Electronic energy + Delta-G solvation = -32450.642000 eV Core-core repulsion = 28321.068114 eV Total energy + Delta-G solvation = -4129.573887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.24934 -41.04623 -39.07100 -37.75994 -36.65920 -35.49891 -34.49243 -34.44110 -32.89847 -31.10705 -29.31087 -28.35309 -28.27434 -27.36913 -25.71417 -24.41714 -23.74652 -22.32144 -21.70553 -21.03950 -20.33681 -19.17317 -18.93706 -17.84202 -17.56476 -17.27594 -17.05884 -16.35126 -16.28601 -15.87681 -15.56435 -15.30824 -15.08102 -14.99916 -14.83654 -14.56374 -14.50969 -14.42501 -14.23473 -13.74314 -13.31740 -13.22416 -13.18228 -13.10562 -13.04939 -12.88167 -12.84649 -12.83229 -12.76707 -12.60679 -12.49283 -12.37302 -12.23565 -11.89880 -11.89642 -11.56255 -11.43717 -11.38589 -11.26604 -11.06571 -10.91318 -10.83899 -9.87550 -9.64107 -8.39863 -6.46256 0.95760 1.27995 1.32452 1.42836 1.64671 1.70722 2.25701 2.42164 2.79033 3.01406 3.67528 3.71248 3.74352 3.77830 3.81788 3.88199 3.96361 4.04341 4.20695 4.41616 4.43862 4.51027 4.61527 4.63379 4.64138 4.68538 4.73547 4.75143 4.77610 4.79125 4.81079 4.85356 4.89554 4.90103 4.99307 5.03328 5.05389 5.12404 5.15335 5.29564 5.32783 5.33919 5.36044 5.39379 5.41906 5.46887 5.49014 5.71505 6.10258 6.26774 6.58555 6.83180 7.18671 7.21083 7.38411 8.75082 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.003470 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.033388 B = 8067.078106 C = 9071.575290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.239 3.761 3 H 0.032 0.968 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.036 3.964 7 N -0.928 5.928 8 Si 0.926 3.074 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.260 1.260 12 N -0.700 5.700 13 C 0.496 3.504 14 O -0.578 6.578 15 C 0.145 3.855 16 H 0.122 0.878 17 C -0.111 4.111 18 C -0.100 4.100 19 H 0.045 0.955 20 C -0.138 4.138 21 C -0.115 4.115 22 C 0.105 3.895 23 N -0.573 5.573 24 C 0.653 3.347 25 O -0.592 6.592 26 O -0.362 6.362 27 C 0.122 3.878 28 C -0.177 4.177 29 C -0.134 4.134 30 C -0.182 4.182 31 H 0.055 0.945 32 H 0.030 0.970 33 H 0.048 0.952 34 H 0.271 0.729 35 H 0.405 0.595 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.104 0.896 50 H 0.074 0.926 51 H 0.057 0.943 52 H 0.094 0.906 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.758 1.571 26.119 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.135 3.865 3 H 0.050 0.950 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.165 4.165 7 N -0.567 5.567 8 Si 0.751 3.249 9 H -0.196 1.196 10 H -0.203 1.203 11 H -0.184 1.184 12 N -0.349 5.349 13 C 0.282 3.718 14 O -0.458 6.458 15 C 0.038 3.962 16 H 0.140 0.860 17 C -0.149 4.149 18 C -0.119 4.119 19 H 0.064 0.936 20 C -0.195 4.195 21 C -0.153 4.153 22 C -0.016 4.016 23 N -0.312 5.312 24 C 0.408 3.592 25 O -0.483 6.483 26 O -0.277 6.277 27 C 0.086 3.914 28 C -0.234 4.234 29 C -0.190 4.190 30 C -0.239 4.239 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.240 0.760 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.110 0.890 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.122 0.878 50 H 0.093 0.907 51 H 0.076 0.924 52 H 0.113 0.887 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.394 2.103 25.978 26.100 hybrid contribution -0.200 0.250 -1.039 1.087 sum 1.195 2.353 24.939 25.078 Atomic orbital electron populations 1.22116 0.97620 1.01081 0.99143 1.18838 0.91528 0.93180 0.82946 0.94961 1.21158 1.44393 0.94816 0.96028 0.92461 1.25579 0.93697 1.02300 0.94932 1.69969 1.46497 1.37749 1.02435 0.86068 0.79713 0.81500 0.77633 1.19595 1.20304 1.18403 1.46408 1.64768 1.14482 1.09263 1.21358 0.77532 0.87497 0.85430 1.90578 1.52463 1.17349 1.85437 1.21080 0.98249 0.95781 0.81084 0.86015 1.21972 0.89377 0.98705 1.04835 1.21152 0.97266 0.95446 0.98028 0.93600 1.21743 0.93041 1.02480 1.02253 1.21900 0.93634 1.02457 0.97280 1.21973 0.94178 0.82561 1.02935 1.46613 1.43676 1.20472 1.20408 1.18018 0.78705 0.82276 0.80187 1.90874 1.57225 1.21929 1.78277 1.86305 1.60796 1.48495 1.32074 1.22469 0.86386 0.94711 0.87821 1.22449 1.02289 0.96331 1.02302 1.21872 1.03700 0.98718 0.94756 1.22487 0.96818 1.02404 1.02178 0.92630 0.95050 0.93247 0.91970 0.76039 0.88142 0.89307 0.93065 0.91952 0.90909 0.90007 0.89056 0.88296 0.91450 0.91506 0.89009 0.92041 0.91658 0.87794 0.90732 0.92406 0.88720 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.28 9.47 71.98 0.68 -5.60 16 2 C 0.24 11.34 2.22 44.25 0.10 11.44 16 3 H 0.03 1.66 4.73 -2.39 -0.01 1.65 16 4 C -0.53 -28.31 9.05 25.60 0.23 -28.08 16 5 H 0.06 3.28 8.06 -2.91 -0.02 3.26 16 6 C 0.04 1.99 5.47 84.66 0.46 2.45 16 7 N -0.93 -54.93 13.96 21.45 0.30 -54.63 16 8 Si 0.93 44.34 26.99 68.60 1.85 46.19 16 9 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.26 -12.28 6.82 99.48 0.68 -11.60 16 12 N -0.70 -28.07 5.07 -446.11 -2.26 -30.33 16 13 C 0.50 18.87 6.10 87.66 0.53 19.40 16 14 O -0.58 -25.44 13.63 -3.05 -0.04 -25.48 16 15 C 0.14 4.31 3.00 44.22 0.13 4.44 16 16 H 0.12 3.60 7.01 -2.38 -0.02 3.58 16 17 C -0.11 -2.61 4.82 30.67 0.15 -2.46 16 18 C -0.10 -2.37 2.52 -10.77 -0.03 -2.39 16 19 H 0.05 1.43 7.10 -2.38 -0.02 1.41 16 20 C -0.14 -2.60 9.19 71.98 0.66 -1.94 16 21 C -0.11 -2.31 5.36 30.67 0.16 -2.15 16 22 C 0.11 2.70 5.94 86.36 0.51 3.21 16 23 N -0.57 -16.68 2.54 -929.44 -2.36 -19.05 16 24 C 0.65 19.76 7.74 129.79 1.00 20.77 16 25 O -0.59 -19.97 11.30 19.78 0.22 -19.75 16 26 O -0.36 -9.37 8.52 -55.37 -0.47 -9.84 16 27 C 0.12 2.47 1.13 -10.79 -0.01 2.46 16 28 C -0.18 -3.27 8.37 71.98 0.60 -2.67 16 29 C -0.13 -1.74 8.85 71.98 0.64 -1.10 16 30 C -0.18 -3.97 8.37 71.98 0.60 -3.36 16 31 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 32 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.18 16 34 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.40 14.42 8.59 -92.70 -0.80 13.63 16 36 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.10 2.22 6.93 -2.39 -0.02 2.20 16 44 H 0.07 2.14 6.17 -2.39 -0.01 2.13 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.06 1.51 5.88 -2.39 -0.01 1.50 16 48 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.06 1.65 5.88 -2.39 -0.01 1.63 16 52 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 53 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -69.24 407.72 3.74 -65.50 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.07 Total: 32.95 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 6.44 Total: 14.44 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -4.33 Total: -104.01 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -0.29 Total: -55.07 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.85 Total: 46.19 kcal Total: -69.24 3.74 -65.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495493352.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.968 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds