Wall clock time and date at job start Sat Apr 11 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.44790 * 2 1 4 4 C 1.53035 * 109.46020 * 240.03263 * 2 1 3 5 5 C 1.53192 * 109.31335 * 178.61408 * 4 2 1 6 6 N 1.46928 * 108.77501 * 54.63333 * 5 4 2 7 7 C 1.34773 * 120.63051 * 126.41600 * 6 5 4 8 8 O 1.21518 * 119.99941 * 173.77172 * 7 6 5 9 9 O 1.34636 * 120.00359 * 353.76439 * 7 6 5 10 10 C 1.45198 * 117.00454 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47013 * 59.99936 * 10 9 7 12 12 C 1.52997 * 109.47103 * 180.02562 * 10 9 7 13 13 C 1.52996 * 109.47032 * 300.00278 * 10 9 7 14 14 C 1.46930 * 118.74037 * 306.39047 * 6 5 4 15 15 H 1.09003 * 109.58757 * 293.68363 * 14 6 5 16 16 C 1.50692 * 109.58866 * 173.39328 * 14 6 5 17 17 O 1.21279 * 120.00576 * 298.65836 * 16 14 6 18 18 N 1.34781 * 119.99842 * 118.65563 * 16 14 6 19 19 C 1.46501 * 119.99969 * 180.02562 * 18 16 14 20 20 C 1.53001 * 109.47140 * 180.02562 * 19 18 16 21 21 C 1.50694 * 109.47449 * 180.02562 * 20 19 18 22 22 H 1.08010 * 119.99740 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00623 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99208 * 359.97438 * 23 21 20 25 25 Si 1.86790 * 120.00195 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47045 * 90.00382 * 25 23 21 27 27 H 1.48507 * 109.47303 * 209.99884 * 25 23 21 28 28 H 1.48492 * 109.47694 * 330.00226 * 25 23 21 29 29 C 1.53034 * 109.45878 * 119.96084 * 2 1 3 30 30 H 1.08997 * 109.47223 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47298 * 299.96863 * 1 2 3 32 32 H 1.08999 * 109.47154 * 59.96892 * 1 2 3 33 33 H 1.08999 * 109.49897 * 298.56582 * 4 2 1 34 34 H 1.09003 * 109.49949 * 58.63207 * 4 2 1 35 35 H 1.08992 * 109.58851 * 174.41879 * 5 4 2 36 36 H 1.09002 * 109.58430 * 294.84883 * 5 4 2 37 37 H 1.08998 * 109.47426 * 60.00077 * 11 10 9 38 38 H 1.09005 * 109.47203 * 180.02562 * 11 10 9 39 39 H 1.09001 * 109.47330 * 299.99784 * 11 10 9 40 40 H 1.08996 * 109.47454 * 59.99942 * 12 10 9 41 41 H 1.09005 * 109.46827 * 180.02562 * 12 10 9 42 42 H 1.08998 * 109.46953 * 299.99689 * 12 10 9 43 43 H 1.08999 * 109.47445 * 59.99549 * 13 10 9 44 44 H 1.08997 * 109.47153 * 180.02562 * 13 10 9 45 45 H 1.09006 * 109.46919 * 300.00108 * 13 10 9 46 46 H 0.97003 * 120.00008 * 0.02562 * 18 16 14 47 47 H 1.09004 * 109.47099 * 299.99916 * 19 18 16 48 48 H 1.09000 * 109.47031 * 60.00340 * 19 18 16 49 49 H 1.09008 * 109.46602 * 300.00234 * 20 19 18 50 50 H 1.09000 * 109.47236 * 60.00030 * 20 19 18 51 51 H 0.97007 * 119.99215 * 179.97438 * 24 23 21 52 52 H 1.09006 * 109.50328 * 301.33988 * 29 2 1 53 53 H 1.09003 * 109.49840 * 61.43380 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5713 -0.6886 -1.2642 6 7 4.0678 -1.2488 0.0001 7 6 4.9621 -2.2571 0.0001 8 8 5.4504 -2.6360 1.0464 9 8 5.3142 -2.8447 -1.1589 10 6 6.2820 -3.9245 -1.0833 11 6 5.7257 -5.0474 -0.2055 12 6 6.5559 -4.4632 -2.4888 13 6 7.5846 -3.4001 -0.4758 14 6 3.5714 -0.6884 1.2644 15 1 3.9163 0.3403 1.3686 16 6 4.0832 -1.5123 2.4176 17 8 3.7851 -2.6846 2.5050 18 7 4.8725 -0.9463 3.3522 19 6 5.3706 -1.7473 4.4731 20 6 6.2357 -0.8712 5.3813 21 6 6.7487 -1.6952 6.5340 22 1 6.4837 -2.7395 6.6113 23 6 7.5561 -1.1163 7.4900 24 7 7.8791 0.1550 7.3955 25 14 8.1913 -2.1377 8.9191 26 1 9.4920 -2.7516 8.5493 27 1 8.3754 -1.2661 10.1073 28 1 7.2117 -3.2075 9.2371 29 6 2.0398 -0.7206 1.2501 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5133 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6978 -1.7556 -1.2382 34 1 1.6567 -0.2211 -2.1398 35 1 3.9416 -1.2845 -2.0983 36 1 3.9142 0.3410 -1.3673 37 1 4.7977 -5.4210 -0.6381 38 1 6.4525 -5.8578 -0.1483 39 1 5.5310 -4.6632 0.7959 40 1 6.9523 -3.6631 -3.1138 41 1 7.2821 -5.2741 -2.4319 42 1 5.6280 -4.8367 -2.9219 43 1 7.3899 -3.0159 0.5255 44 1 8.3113 -4.2105 -0.4194 45 1 7.9809 -2.6000 -1.1012 46 1 5.1107 -0.0085 3.2825 47 1 4.5278 -2.1392 5.0425 48 1 5.9674 -2.5755 4.0909 49 1 7.0786 -0.4789 4.8121 50 1 5.6386 -0.0432 5.7635 51 1 8.4469 0.5624 8.0683 52 1 1.6571 -0.2206 2.1399 53 1 1.6977 -1.7555 1.2384 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495575749.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:00 Heat of formation + Delta-G solvation = -151.349249 kcal Electronic energy + Delta-G solvation = -32150.472132 eV Core-core repulsion = 28020.946877 eV Total energy + Delta-G solvation = -4129.525255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.31658 -40.71234 -39.14205 -37.74517 -36.47446 -35.45814 -34.78681 -34.49449 -32.67490 -31.27800 -29.29626 -28.40598 -28.30274 -27.04389 -25.30256 -24.48338 -23.54860 -22.66046 -21.46042 -21.13020 -20.20797 -19.09329 -18.54031 -17.76543 -17.67140 -17.08597 -16.80549 -16.53456 -16.38753 -15.99222 -15.56258 -15.48140 -15.27074 -15.05439 -14.79471 -14.61980 -14.48800 -14.35050 -14.26008 -13.94326 -13.30046 -13.21986 -13.17510 -12.96902 -12.90933 -12.88167 -12.82877 -12.72349 -12.54270 -12.52125 -12.38110 -12.27765 -12.18559 -12.01597 -11.66201 -11.61151 -11.46519 -11.39807 -11.36707 -10.83516 -10.61744 -10.57417 -9.93840 -9.75928 -8.25816 -6.36424 0.91342 1.38639 1.39927 1.51572 1.79462 1.93986 2.25406 2.42933 2.89920 3.08143 3.59835 3.74165 3.75639 3.76481 3.79782 3.92704 3.97031 4.06232 4.09891 4.39545 4.49183 4.50011 4.53848 4.56598 4.61242 4.67877 4.70060 4.72186 4.72820 4.79637 4.84785 4.87181 4.88510 4.95816 5.04299 5.07233 5.11926 5.17855 5.26571 5.31235 5.34129 5.38557 5.44380 5.47414 5.52827 5.55137 5.57644 5.78483 6.15995 6.26255 6.72084 6.75964 7.27398 7.32413 7.50304 8.86229 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010160 B = 0.003347 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.361692 B = 8364.093145 C =10449.302686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.097 0.903 4 C -0.125 4.125 5 C 0.110 3.890 6 N -0.588 5.588 7 C 0.634 3.366 8 O -0.561 6.561 9 O -0.359 6.359 10 C 0.130 3.870 11 C -0.178 4.178 12 C -0.129 4.129 13 C -0.178 4.178 14 C 0.149 3.851 15 H 0.119 0.881 16 C 0.525 3.475 17 O -0.575 6.575 18 N -0.717 5.717 19 C 0.156 3.844 20 C 0.028 3.972 21 C -0.548 4.548 22 H 0.053 0.947 23 C 0.008 3.992 24 N -0.925 5.925 25 Si 0.966 3.034 26 H -0.273 1.273 27 H -0.275 1.275 28 H -0.267 1.267 29 C -0.113 4.113 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.404 0.596 47 H 0.039 0.961 48 H 0.029 0.971 49 H 0.002 0.998 50 H 0.011 0.989 51 H 0.267 0.733 52 H 0.088 0.912 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.849 0.729 -26.052 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 H 0.115 0.885 4 C -0.164 4.164 5 C -0.010 4.010 6 N -0.331 5.331 7 C 0.389 3.611 8 O -0.449 6.449 9 O -0.274 6.274 10 C 0.094 3.906 11 C -0.235 4.235 12 C -0.186 4.186 13 C -0.235 4.235 14 C 0.043 3.957 15 H 0.137 0.863 16 C 0.313 3.687 17 O -0.454 6.454 18 N -0.369 5.369 19 C 0.032 3.968 20 C -0.010 4.010 21 C -0.587 4.587 22 H 0.072 0.928 23 C -0.191 4.191 24 N -0.565 5.565 25 Si 0.790 3.210 26 H -0.198 1.198 27 H -0.200 1.200 28 H -0.192 1.192 29 C -0.152 4.152 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.239 0.761 47 H 0.058 0.942 48 H 0.047 0.953 49 H 0.021 0.979 50 H 0.030 0.970 51 H 0.075 0.925 52 H 0.107 0.893 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.753 -0.171 -25.625 27.790 hybrid contribution 0.764 -0.288 1.375 1.600 sum -9.989 -0.459 -24.250 26.230 Atomic orbital electron populations 1.21784 0.93702 1.01720 1.02859 1.21136 0.96721 1.00040 0.92412 0.88479 1.22013 0.93802 1.01154 0.99381 1.22063 0.95229 1.00505 0.83236 1.46921 1.43580 1.34450 1.08179 1.18408 0.80126 0.80106 0.82487 1.91051 1.56693 1.65137 1.32032 1.86238 1.59945 1.49239 1.31944 1.22327 0.85984 0.83539 0.98785 1.22431 1.01861 0.98625 1.00613 1.21840 1.03445 1.02019 0.91303 1.22440 0.96731 1.02679 1.01691 1.21277 0.96605 0.97233 0.80557 0.86295 1.20440 0.77719 0.87564 0.83010 1.90615 1.59919 1.17916 1.76926 1.45945 1.50723 1.14327 1.25862 1.20976 0.95960 0.93774 0.86072 1.19091 0.93766 0.94794 0.93322 1.21439 1.31209 0.96876 1.09128 0.92837 1.25873 0.96048 0.96235 1.00901 1.70064 1.37245 1.12596 1.36549 0.85437 0.78773 0.78558 0.78237 1.19804 1.20011 1.19172 1.21946 0.90265 1.01870 1.01108 0.93652 0.92286 0.90590 0.92984 0.87232 0.88543 0.88485 0.92143 0.89593 0.93317 0.90460 0.88331 0.90911 0.93290 0.89612 0.91285 0.76090 0.94233 0.95304 0.97943 0.97024 0.92455 0.89319 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.19 71.98 0.66 -0.96 16 2 C -0.08 -1.10 2.68 -10.77 -0.03 -1.13 16 3 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.13 -1.54 5.36 30.67 0.16 -1.38 16 5 C 0.11 1.69 6.46 86.36 0.56 2.24 16 6 N -0.59 -14.98 2.97 -929.40 -2.76 -17.74 16 7 C 0.63 20.64 7.42 129.79 0.96 21.60 16 8 O -0.56 -23.14 7.65 27.62 0.21 -22.93 16 9 O -0.36 -9.80 8.53 -55.45 -0.47 -10.27 16 10 C 0.13 3.19 1.13 -10.80 -0.01 3.18 16 11 C -0.18 -4.99 8.37 71.98 0.60 -4.39 16 12 C -0.13 -1.98 8.85 71.98 0.64 -1.34 16 13 C -0.18 -4.68 8.37 71.98 0.60 -4.08 16 14 C 0.15 3.88 3.31 44.23 0.15 4.03 16 15 H 0.12 2.39 7.92 -2.39 -0.02 2.37 16 16 C 0.53 20.04 4.37 87.65 0.38 20.43 16 17 O -0.57 -27.09 14.60 20.56 0.30 -26.78 16 18 N -0.72 -28.60 5.56 -463.06 -2.57 -31.17 16 19 C 0.16 7.65 5.61 86.38 0.48 8.14 16 20 C 0.03 1.51 5.09 29.85 0.15 1.66 16 21 C -0.55 -32.60 9.11 25.60 0.23 -32.37 16 22 H 0.05 3.16 7.74 -2.91 -0.02 3.13 16 23 C 0.01 0.48 5.46 84.65 0.46 0.94 16 24 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 25 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 26 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 28 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 29 C -0.11 -2.41 4.60 30.67 0.14 -2.27 16 30 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 1.45 6.92 -2.39 -0.02 1.43 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.05 1.87 5.88 -2.39 -0.01 1.85 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.05 1.73 5.88 -2.39 -0.01 1.72 16 44 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.40 13.83 8.32 -92.71 -0.77 13.06 16 47 H 0.04 1.99 8.14 -2.38 -0.02 1.98 16 48 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 50 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 52 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 53 H 0.05 1.42 7.93 -2.39 -0.02 1.40 16 Total: -1.00 -80.40 412.45 3.27 -77.13 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.11 Total: 25.71 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.15 Total: 14.31 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -5.05 Total: -104.57 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: 0.04 Total: -59.98 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -80.40 3.27 -77.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495575749.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.218 kcal (2) G-P(sol) polarization free energy of solvation -80.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds