Wall clock time and date at job start Sat Apr 11 2020 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.45939 * 2 1 4 4 C 1.53046 * 109.46112 * 119.96787 * 2 1 3 5 5 C 1.53188 * 109.31134 * 181.38836 * 4 2 1 6 6 N 1.46925 * 108.77489 * 305.36624 * 5 4 2 7 7 C 1.34781 * 120.63057 * 233.59225 * 6 5 4 8 8 O 1.21513 * 120.00093 * 180.02562 * 7 6 5 9 9 O 1.34637 * 119.99777 * 0.02562 * 7 6 5 10 10 C 1.45201 * 116.99583 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47313 * 60.00325 * 10 9 7 12 12 C 1.53004 * 109.46744 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47503 * 300.00195 * 10 9 7 14 14 C 1.46924 * 118.74304 * 53.61037 * 6 5 4 15 15 H 1.08993 * 109.59015 * 186.46496 * 14 6 5 16 16 C 1.50698 * 109.58303 * 66.17520 * 14 6 5 17 17 O 1.21273 * 120.00465 * 340.29024 * 16 14 6 18 18 N 1.34786 * 119.99745 * 160.28356 * 16 14 6 19 19 C 1.46497 * 119.99733 * 180.02562 * 18 16 14 20 20 C 1.52999 * 109.46992 * 180.02562 * 19 18 16 21 21 C 1.50702 * 109.47525 * 179.97438 * 20 19 18 22 22 H 1.08002 * 119.99441 * 0.02562 * 21 20 19 23 23 C 1.37871 * 120.00075 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00481 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99886 * 179.73007 * 23 21 20 26 26 H 1.48502 * 109.46964 * 270.27509 * 25 23 21 27 27 H 1.48505 * 109.47036 * 30.26897 * 25 23 21 28 28 H 1.48490 * 109.47395 * 150.27411 * 25 23 21 29 29 C 1.53191 * 108.89160 * 306.32312 * 14 6 5 30 30 H 1.08998 * 109.46958 * 300.03095 * 1 2 3 31 31 H 1.08998 * 109.47145 * 60.03062 * 1 2 3 32 32 H 1.08993 * 109.47134 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.49344 * 61.43301 * 4 2 1 34 34 H 1.09002 * 109.49533 * 301.34047 * 4 2 1 35 35 H 1.09001 * 109.58405 * 185.58294 * 5 4 2 36 36 H 1.08998 * 109.59014 * 65.15490 * 5 4 2 37 37 H 1.09004 * 109.46857 * 59.99768 * 11 10 9 38 38 H 1.08997 * 109.47032 * 179.97438 * 11 10 9 39 39 H 1.09000 * 109.47180 * 299.99844 * 11 10 9 40 40 H 1.09002 * 109.47445 * 60.00462 * 12 10 9 41 41 H 1.09008 * 109.46693 * 179.97438 * 12 10 9 42 42 H 1.08996 * 109.47384 * 299.99644 * 12 10 9 43 43 H 1.08995 * 109.47276 * 59.99564 * 13 10 9 44 44 H 1.08997 * 109.47374 * 180.02562 * 13 10 9 45 45 H 1.09009 * 109.46926 * 300.00114 * 13 10 9 46 46 H 0.97000 * 119.99687 * 0.02562 * 18 16 14 47 47 H 1.08995 * 109.47421 * 60.00536 * 19 18 16 48 48 H 1.09001 * 109.47150 * 300.00145 * 19 18 16 49 49 H 1.09009 * 109.47378 * 60.00101 * 20 19 18 50 50 H 1.08998 * 109.47458 * 300.00562 * 20 19 18 51 51 H 0.97005 * 119.99656 * 359.72741 * 24 23 21 52 52 H 1.09003 * 109.50119 * 174.65197 * 29 14 6 53 53 H 1.09009 * 109.49724 * 294.75053 * 29 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2487 0.0000 7 6 4.9621 -2.2571 -0.0001 8 8 5.3654 -2.7114 -1.0525 9 8 5.4085 -2.7611 1.1658 10 6 6.3710 -3.8456 1.0897 11 6 7.6186 -3.3688 0.3435 12 6 6.7581 -4.2840 2.5035 13 6 5.7500 -5.0272 0.3420 14 6 3.5714 -0.6884 -1.2643 15 1 3.9438 -1.2828 -2.0986 16 6 4.0455 0.7350 -1.4066 17 8 4.4095 1.3536 -0.4291 18 7 4.0650 1.3205 -2.6205 19 6 4.5264 2.7040 -2.7590 20 6 4.4483 3.1230 -4.2284 21 6 4.9223 4.5464 -4.3709 22 1 5.2471 5.0970 -3.5004 23 6 4.9411 5.1457 -5.6124 24 7 4.5460 4.4751 -6.6725 25 14 5.5215 6.9126 -5.7879 26 1 4.3655 7.8313 -5.6304 27 1 6.5339 7.2072 -4.7421 28 1 6.1265 7.1039 -7.1304 29 6 2.0399 -0.7209 -1.2537 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5133 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6978 -1.7557 1.2382 34 1 1.6572 -0.2208 2.1399 35 1 3.9417 -1.2846 2.0983 36 1 3.9143 0.3409 1.3674 37 1 8.0611 -2.5270 0.8762 38 1 8.3413 -4.1828 0.2867 39 1 7.3425 -3.0567 -0.6638 40 1 5.8691 -4.6239 3.0348 41 1 7.4803 -5.0985 2.4464 42 1 7.2004 -3.4425 3.0366 43 1 5.4737 -4.7151 -0.6652 44 1 6.4723 -5.8414 0.2852 45 1 4.8610 -5.3669 0.8737 46 1 3.7736 0.8258 -3.4023 47 1 5.5574 2.7796 -2.4137 48 1 3.8938 3.3596 -2.1605 49 1 3.4170 3.0476 -4.5735 50 1 5.0805 2.4675 -4.8273 51 1 4.2450 3.5574 -6.5814 52 1 1.6592 -0.2216 -2.1447 53 1 1.6981 -1.7560 -1.2420 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495575751.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:08 Heat of formation + Delta-G solvation = -163.174217 kcal Electronic energy + Delta-G solvation = -31579.423009 eV Core-core repulsion = 27449.384986 eV Total energy + Delta-G solvation = -4130.038024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.33226 -41.15019 -39.11798 -37.80996 -36.82185 -35.56187 -35.08587 -34.54251 -32.84721 -31.06122 -29.39506 -28.38890 -28.30168 -26.68877 -25.45185 -24.45268 -23.75467 -22.87597 -22.00518 -21.12525 -20.29808 -19.10738 -18.94237 -17.96141 -17.69460 -17.22644 -17.05763 -16.78115 -16.14794 -15.68650 -15.66578 -15.61671 -15.47750 -15.12199 -15.01885 -14.84084 -14.47666 -14.38601 -14.21735 -13.77629 -13.69095 -13.29749 -13.22925 -13.15265 -12.93114 -12.88893 -12.87766 -12.80713 -12.65347 -12.44289 -12.32060 -12.27951 -12.11117 -11.95019 -11.91155 -11.68560 -11.48639 -11.42702 -11.17036 -11.06074 -10.81037 -10.60005 -10.17726 -9.75872 -8.73866 -6.45158 0.87490 1.46837 1.52479 1.60089 1.61005 1.79424 2.17421 2.55326 2.72527 3.11596 3.52412 3.61866 3.67124 3.73805 3.78136 3.78659 3.93057 3.97834 4.13810 4.27170 4.29592 4.38384 4.46895 4.57330 4.60138 4.61290 4.63577 4.69609 4.70091 4.74598 4.77320 4.82608 4.85847 4.86677 4.95664 5.00302 5.04278 5.09820 5.12381 5.26031 5.29811 5.30168 5.31698 5.33925 5.36163 5.43006 5.46136 5.90752 6.11747 6.18370 6.40932 6.54464 7.08282 7.15164 7.34946 8.68460 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012700 B = 0.002677 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.115684 B =10456.520554 C =11803.984024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 H 0.049 0.951 4 C -0.116 4.116 5 C 0.104 3.896 6 N -0.575 5.575 7 C 0.652 3.348 8 O -0.591 6.591 9 O -0.362 6.362 10 C 0.123 3.877 11 C -0.182 4.182 12 C -0.134 4.134 13 C -0.176 4.176 14 C 0.145 3.855 15 H 0.123 0.877 16 C 0.501 3.499 17 O -0.568 6.568 18 N -0.715 5.715 19 C 0.152 3.848 20 C 0.007 3.993 21 C -0.623 4.623 22 H 0.049 0.951 23 C -0.032 4.032 24 N -0.933 5.933 25 Si 1.119 2.881 26 H -0.270 1.270 27 H -0.273 1.273 28 H -0.281 1.281 29 C -0.111 4.111 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.410 0.590 47 H 0.040 0.960 48 H 0.051 0.949 49 H 0.010 0.990 50 H 0.002 0.998 51 H 0.259 0.741 52 H 0.093 0.907 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.682 -20.788 19.296 28.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 H 0.068 0.932 4 C -0.154 4.154 5 C -0.017 4.017 6 N -0.314 5.314 7 C 0.408 3.592 8 O -0.482 6.482 9 O -0.276 6.276 10 C 0.087 3.913 11 C -0.239 4.239 12 C -0.191 4.191 13 C -0.234 4.234 14 C 0.038 3.962 15 H 0.140 0.860 16 C 0.287 3.713 17 O -0.447 6.447 18 N -0.366 5.366 19 C 0.028 3.972 20 C -0.030 4.030 21 C -0.661 4.661 22 H 0.067 0.933 23 C -0.230 4.230 24 N -0.569 5.569 25 Si 0.940 3.060 26 H -0.195 1.195 27 H -0.198 1.198 28 H -0.206 1.206 29 C -0.149 4.149 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.110 0.890 45 H 0.086 0.914 46 H 0.246 0.754 47 H 0.058 0.942 48 H 0.069 0.931 49 H 0.028 0.972 50 H 0.021 0.979 51 H 0.069 0.931 52 H 0.111 0.889 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.989 -19.353 18.651 27.172 hybrid contribution -0.016 -1.143 0.279 1.176 sum -4.004 -20.496 18.930 28.186 Atomic orbital electron populations 1.21746 0.92820 1.02765 1.02238 1.21211 0.97378 0.98697 0.94462 0.93214 1.21915 0.93074 1.01894 0.98544 1.22005 0.95699 1.00008 0.84002 1.46629 1.43057 1.33599 1.08092 1.18049 0.78610 0.79905 0.82671 1.90883 1.61403 1.63397 1.32566 1.86310 1.58627 1.51443 1.31239 1.22477 0.86119 0.83735 0.99013 1.22490 0.97466 1.02693 1.01279 1.21877 1.03089 1.02519 0.91581 1.22448 1.02157 0.97399 1.01358 1.21082 0.97378 0.90051 0.87697 0.85950 1.21415 0.77432 0.89600 0.82860 1.90613 1.49262 1.66284 1.38522 1.46146 1.65870 1.14983 1.09645 1.21032 0.97614 0.80805 0.97744 1.19298 0.95981 0.96241 0.91501 1.22317 1.48109 0.99224 0.96469 0.93263 1.27358 0.94273 1.09510 0.91850 1.70894 1.41994 1.12192 1.31869 0.82903 0.76996 0.69851 0.76254 1.19530 1.19792 1.20602 1.22061 0.88971 1.03794 1.00090 0.91889 0.92750 0.91131 0.90116 0.88909 0.88344 0.91337 0.92745 0.88729 0.92465 0.90651 0.87807 0.91630 0.92069 0.89026 0.91426 0.75449 0.94155 0.93101 0.97223 0.97932 0.93124 0.88856 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.19 71.98 0.66 -1.41 16 2 C -0.10 -1.93 2.52 -10.66 -0.03 -1.95 16 3 H 0.05 1.29 7.08 -2.38 -0.02 1.27 16 4 C -0.12 -2.00 5.36 30.67 0.16 -1.84 16 5 C 0.10 2.41 5.95 86.36 0.51 2.92 16 6 N -0.57 -15.35 2.55 -929.43 -2.37 -17.71 16 7 C 0.65 18.68 7.74 129.79 1.00 19.69 16 8 O -0.59 -19.16 11.29 19.80 0.22 -18.93 16 9 O -0.36 -8.89 8.53 -55.47 -0.47 -9.36 16 10 C 0.12 2.37 1.13 -10.79 -0.01 2.36 16 11 C -0.18 -3.87 8.37 71.98 0.60 -3.26 16 12 C -0.13 -1.63 8.85 71.98 0.64 -0.99 16 13 C -0.18 -3.12 8.37 71.98 0.60 -2.51 16 14 C 0.14 3.82 3.00 44.23 0.13 3.95 16 15 H 0.12 3.25 7.00 -2.39 -0.02 3.24 16 16 C 0.50 17.02 6.14 87.66 0.54 17.55 16 17 O -0.57 -22.84 13.93 -3.01 -0.04 -22.88 16 18 N -0.71 -25.12 5.56 -463.07 -2.57 -27.69 16 19 C 0.15 6.64 5.61 86.38 0.48 7.12 16 20 C 0.01 0.36 4.40 29.85 0.13 0.50 16 21 C -0.62 -35.50 9.11 25.60 0.23 -35.26 16 22 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 23 C -0.03 -1.81 5.46 84.65 0.46 -1.35 16 24 N -0.93 -56.57 13.65 21.45 0.29 -56.28 16 25 Si 1.12 50.17 29.90 68.60 2.05 52.22 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 28 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 29 C -0.11 -2.17 4.85 30.77 0.15 -2.02 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 2.01 6.93 -2.39 -0.02 1.99 16 36 H 0.07 1.97 6.15 -2.39 -0.01 1.96 16 37 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.60 5.88 -2.39 -0.01 1.58 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 1.45 5.88 -2.39 -0.01 1.44 16 44 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.41 12.33 8.47 -92.71 -0.79 11.55 16 47 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.01 0.49 8.01 -2.38 -0.02 0.47 16 50 H 0.00 0.13 8.00 -2.39 -0.02 0.11 16 51 H 0.26 15.67 7.22 -92.70 -0.67 15.00 16 52 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 53 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -72.88 411.44 3.59 -69.28 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.20 Total: 27.87 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 6.28 Total: 3.49 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -4.65 Total: -101.68 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.29 Total: -51.18 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.05 Total: 52.22 kcal Total: -72.88 3.59 -69.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495575751.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.889 kcal (2) G-P(sol) polarization free energy of solvation -72.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds