Wall clock time and date at job start Sat Apr 11 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46481 * 2 1 4 4 C 1.53042 * 109.45880 * 240.02995 * 2 1 3 5 5 C 1.53157 * 109.33056 * 178.61507 * 4 2 1 6 6 H 1.09004 * 109.59248 * 294.85937 * 5 4 2 7 7 C 1.53004 * 109.71207 * 174.50127 * 5 4 2 8 8 N 1.46929 * 108.76852 * 54.64121 * 5 4 2 9 9 C 1.34778 * 120.62896 * 126.41723 * 8 5 4 10 10 O 1.21690 * 120.00108 * 354.93441 * 9 8 5 11 11 C 1.46371 * 120.00110 * 174.94253 * 9 8 5 12 12 H 1.07998 * 119.99543 * 6.80643 * 11 9 8 13 13 C 1.40052 * 120.00164 * 186.80760 * 11 9 8 14 14 N 1.30674 * 119.99720 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 120.00057 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47401 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47469 * 120.00038 * 15 13 11 18 18 H 1.48509 * 109.47049 * 240.00064 * 15 13 11 19 19 C 1.46918 * 118.73784 * 306.39322 * 8 5 4 20 20 C 1.53039 * 109.46283 * 119.97671 * 2 1 3 21 21 H 1.09003 * 109.49800 * 301.31975 * 20 2 1 22 22 C 1.53004 * 109.49838 * 61.38479 * 20 2 1 23 23 N 1.46491 * 109.47146 * 185.00339 * 22 20 2 24 24 C 1.34776 * 120.00138 * 180.02562 * 23 22 20 25 25 O 1.21509 * 119.99866 * 359.97438 * 24 23 22 26 26 O 1.34642 * 120.00143 * 179.97438 * 24 23 22 27 27 C 1.45199 * 116.99869 * 179.97438 * 26 24 23 28 28 C 1.52999 * 109.47528 * 59.99915 * 27 26 24 29 29 C 1.53001 * 109.47330 * 180.02562 * 27 26 24 30 30 C 1.53006 * 109.47082 * 300.00314 * 27 26 24 31 31 H 1.09005 * 109.46481 * 299.99989 * 1 2 3 32 32 H 1.08993 * 109.47236 * 59.99418 * 1 2 3 33 33 H 1.08999 * 109.47001 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.49899 * 298.58384 * 4 2 1 35 35 H 1.09003 * 109.50076 * 58.67483 * 4 2 1 36 36 H 1.09001 * 109.46311 * 296.99638 * 7 5 4 37 37 H 1.08997 * 109.47067 * 56.99113 * 7 5 4 38 38 H 1.08999 * 109.47555 * 176.99744 * 7 5 4 39 39 H 0.97003 * 119.99478 * 179.97438 * 14 13 11 40 40 H 1.08996 * 109.59024 * 293.81558 * 19 8 5 41 41 H 1.09001 * 109.70228 * 173.46410 * 19 8 5 42 42 H 1.08997 * 109.46609 * 305.00090 * 22 20 2 43 43 H 1.08999 * 109.46691 * 64.99962 * 22 20 2 44 44 H 0.97008 * 120.00441 * 359.97438 * 23 22 20 45 45 H 1.09004 * 109.46602 * 59.99560 * 28 27 26 46 46 H 1.08997 * 109.47471 * 180.02562 * 28 27 26 47 47 H 1.09001 * 109.47160 * 300.00777 * 28 27 26 48 48 H 1.08999 * 109.46590 * 60.00087 * 29 27 26 49 49 H 1.08997 * 109.47253 * 179.97438 * 29 27 26 50 50 H 1.09001 * 109.46964 * 299.99920 * 29 27 26 51 51 H 1.08993 * 109.47609 * 59.99785 * 30 27 26 52 52 H 1.08998 * 109.47168 * 180.02562 * 30 27 26 53 53 H 1.09001 * 109.46720 * 299.99816 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5710 -0.6889 -1.2647 6 1 3.9142 0.3405 -1.3677 7 6 4.0934 -1.5233 -2.4359 8 7 4.0676 -1.2494 -0.0005 9 6 4.9617 -2.2579 -0.0007 10 8 5.2956 -2.7747 -1.0506 11 6 5.5308 -2.7317 1.2618 12 1 5.1552 -2.3508 2.2000 13 6 6.5624 -3.6789 1.2532 14 7 7.0164 -4.1401 0.1180 15 14 7.2882 -4.2841 2.8645 16 1 6.6043 -3.6125 3.9987 17 1 7.0993 -5.7531 2.9718 18 1 8.7386 -3.9673 2.9040 19 6 3.5715 -0.6891 1.2638 20 6 2.0399 -0.7210 1.2499 21 1 1.6576 -0.2209 2.1398 22 6 1.5588 -2.1733 1.2338 23 7 1.9451 -2.8296 2.4852 24 6 1.6252 -4.1219 2.6951 25 8 1.0159 -4.7425 1.8465 26 8 1.9806 -4.7253 3.8450 27 6 1.6023 -6.1182 4.0029 28 6 2.2403 -6.9496 2.8882 29 6 2.0878 -6.6278 5.3614 30 6 0.0795 -6.2450 3.9257 31 1 -0.3632 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.6975 -1.7557 -1.2384 35 1 1.6574 -0.2208 -2.1399 36 1 3.7997 -2.5641 -2.3000 37 1 3.6721 -1.1456 -3.3675 38 1 5.1806 -1.4547 -2.4746 39 1 7.7312 -4.7959 0.1120 40 1 3.9146 0.3403 1.3670 41 1 3.9417 -1.2831 2.0994 42 1 0.4739 -2.1954 1.1317 43 1 2.0136 -2.6973 0.3931 44 1 2.4318 -2.3343 3.1626 45 1 3.3252 -6.8592 2.9431 46 1 1.9560 -7.9951 3.0064 47 1 1.8942 -6.5864 1.9205 48 1 1.6327 -6.0354 6.1553 49 1 1.8033 -7.6733 5.4801 50 1 3.1726 -6.5374 5.4168 51 1 -0.2668 -5.8819 2.9581 52 1 -0.2046 -7.2905 4.0446 53 1 -0.3751 -5.6527 4.7199 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496045677.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:11 Heat of formation + Delta-G solvation = -137.350577 kcal Electronic energy + Delta-G solvation = -33190.634709 eV Core-core repulsion = 29061.716483 eV Total energy + Delta-G solvation = -4128.918227 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.81836 -41.02776 -38.74483 -37.91160 -35.88893 -35.05549 -34.59467 -34.27284 -33.23169 -29.83991 -28.37363 -28.28196 -28.05562 -27.69547 -26.82114 -23.88680 -23.20966 -22.91451 -21.38539 -20.84324 -19.92439 -18.99197 -18.29814 -17.62860 -17.40191 -17.27763 -16.46424 -16.38247 -16.14625 -15.78495 -15.66383 -15.41034 -15.17871 -14.71333 -14.53120 -14.33858 -14.20810 -14.14448 -13.50230 -13.32545 -13.21845 -13.20379 -13.11182 -12.97786 -12.92744 -12.87392 -12.84103 -12.81760 -12.57131 -12.42829 -12.35506 -12.27925 -12.19841 -11.97802 -11.79740 -11.57204 -11.35875 -11.20890 -11.12744 -11.02422 -10.90928 -10.05891 -9.17885 -8.86781 -8.17383 -6.73806 1.26633 1.33532 1.34988 1.50064 1.87773 2.21467 2.53246 2.89928 3.25523 3.63716 3.75399 3.76878 3.81040 3.86813 3.91452 3.95853 4.10749 4.21712 4.43700 4.46768 4.52808 4.58170 4.60715 4.68936 4.75554 4.75829 4.77977 4.82008 4.85001 4.87331 4.88172 4.94510 4.99696 5.01403 5.07103 5.12332 5.16509 5.25334 5.28121 5.29701 5.32384 5.41758 5.44294 5.52275 5.57367 5.65634 5.67874 5.85362 6.23441 6.49085 6.54816 6.95440 7.43141 7.55846 8.57286 8.77428 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008287 B = 0.005851 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.042399 B = 4784.439915 C = 7162.085643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 H 0.096 0.904 4 C -0.121 4.121 5 C 0.146 3.854 6 H 0.065 0.935 7 C -0.107 4.107 8 N -0.636 5.636 9 C 0.546 3.454 10 O -0.614 6.614 11 C -0.556 4.556 12 H 0.088 0.912 13 C 0.033 3.967 14 N -0.824 5.824 15 Si 0.973 3.027 16 H -0.241 1.241 17 H -0.278 1.278 18 H -0.269 1.269 19 C 0.117 3.883 20 C -0.100 4.100 21 H 0.120 0.880 22 C 0.154 3.846 23 N -0.693 5.693 24 C 0.646 3.354 25 O -0.600 6.600 26 O -0.371 6.371 27 C 0.124 3.876 28 C -0.182 4.182 29 C -0.134 4.134 30 C -0.173 4.173 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.087 0.913 36 H 0.027 0.973 37 H 0.047 0.953 38 H 0.031 0.969 39 H 0.268 0.732 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.031 0.969 44 H 0.412 0.588 45 H 0.043 0.957 46 H 0.096 0.904 47 H 0.053 0.947 48 H 0.079 0.921 49 H 0.105 0.895 50 H 0.059 0.941 51 H 0.058 0.942 52 H 0.092 0.908 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.214 5.185 11.064 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 H 0.114 0.886 4 C -0.159 4.159 5 C 0.042 3.958 6 H 0.083 0.917 7 C -0.164 4.164 8 N -0.373 5.373 9 C 0.351 3.649 10 O -0.501 6.501 11 C -0.593 4.593 12 H 0.106 0.894 13 C -0.181 4.181 14 N -0.454 5.454 15 Si 0.794 3.206 16 H -0.164 1.164 17 H -0.204 1.204 18 H -0.194 1.194 19 C -0.006 4.006 20 C -0.119 4.119 21 H 0.138 0.862 22 C 0.032 3.968 23 N -0.352 5.352 24 C 0.399 3.601 25 O -0.492 6.492 26 O -0.286 6.286 27 C 0.087 3.913 28 C -0.240 4.240 29 C -0.191 4.191 30 C -0.230 4.230 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.249 0.751 45 H 0.062 0.938 46 H 0.114 0.886 47 H 0.072 0.928 48 H 0.098 0.902 49 H 0.124 0.876 50 H 0.078 0.922 51 H 0.077 0.923 52 H 0.111 0.889 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.221 4.443 10.023 17.957 hybrid contribution 1.167 -0.667 0.154 1.353 sum -13.054 3.776 10.177 16.978 Atomic orbital electron populations 1.21869 0.93474 1.01646 1.03101 1.21029 0.96581 0.99499 0.91974 0.88586 1.22061 0.93926 1.00339 0.99577 1.21056 0.94105 0.96092 0.84529 0.91744 1.21796 0.99819 0.98625 0.96135 1.47987 1.46172 1.37677 1.05456 1.18458 0.77856 0.78438 0.90130 1.90623 1.64659 1.60332 1.34444 1.21431 1.19835 1.25277 0.92777 0.89440 1.26777 0.96132 0.94782 1.00434 1.70193 1.22299 1.23934 1.28978 0.85318 0.78526 0.78239 0.78527 1.16400 1.20371 1.19379 1.21697 0.92877 0.98851 0.87166 1.21857 0.95550 0.93266 1.01238 0.86233 1.21355 0.99213 0.92889 0.83371 1.44656 1.60338 1.08516 1.21707 1.18262 0.78034 0.83067 0.80756 1.90853 1.46713 1.64978 1.46653 1.86294 1.75369 1.29419 1.37473 1.22406 0.95994 0.75330 0.97546 1.22484 1.00243 1.01642 0.99591 1.21883 1.02073 1.02675 0.92490 1.22417 0.93085 1.04224 1.03248 0.90700 0.91466 0.93733 0.94091 0.89484 0.95400 0.93412 0.94941 0.92221 0.91083 0.90338 0.90676 0.95043 0.75112 0.93768 0.88575 0.92768 0.90212 0.87649 0.92199 0.92280 0.88934 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.88 71.98 0.64 -1.85 16 2 C -0.07 -1.56 2.46 -10.77 -0.03 -1.59 16 3 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 4 C -0.12 -3.50 4.31 30.66 0.13 -3.37 16 5 C 0.15 5.47 3.48 44.96 0.16 5.62 16 6 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 7 C -0.11 -4.76 7.60 71.98 0.55 -4.21 16 8 N -0.64 -27.31 2.33 -800.15 -1.87 -29.17 16 9 C 0.55 30.76 7.53 86.36 0.65 31.41 16 10 O -0.61 -39.92 10.45 -4.32 -0.05 -39.96 16 11 C -0.56 -30.77 8.86 24.83 0.22 -30.55 16 12 H 0.09 4.32 5.68 -2.91 -0.02 4.31 16 13 C 0.03 1.86 5.50 85.31 0.47 2.33 16 14 N -0.82 -51.19 11.85 21.84 0.26 -50.93 16 15 Si 0.97 41.95 29.56 68.60 2.03 43.98 16 16 H -0.24 -9.44 7.11 99.48 0.71 -8.74 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 19 C 0.12 3.78 5.63 86.36 0.49 4.26 16 20 C -0.10 -2.44 2.22 -10.72 -0.02 -2.47 16 21 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 22 C 0.15 4.85 4.28 86.38 0.37 5.22 16 23 N -0.69 -22.38 5.24 -590.87 -3.10 -25.48 16 24 C 0.65 23.97 8.06 129.79 1.05 25.01 16 25 O -0.60 -25.35 11.88 19.81 0.24 -25.11 16 26 O -0.37 -12.41 9.94 -55.51 -0.55 -12.96 16 27 C 0.12 3.44 1.13 -10.79 -0.01 3.42 16 28 C -0.18 -5.79 8.37 71.98 0.60 -5.19 16 29 C -0.13 -2.67 8.85 71.98 0.64 -2.03 16 30 C -0.17 -4.18 8.37 71.98 0.60 -3.57 16 31 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.04 0.90 6.36 -2.39 -0.02 0.89 16 34 H 0.04 1.42 6.45 -2.39 -0.02 1.40 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.03 1.44 6.77 -2.39 -0.02 1.43 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.03 1.67 6.72 -2.39 -0.02 1.65 16 39 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.08 2.73 4.33 -2.39 -0.01 2.72 16 42 H 0.08 2.19 6.22 -2.39 -0.01 2.18 16 43 H 0.03 1.33 6.13 -2.39 -0.01 1.31 16 44 H 0.41 11.39 7.78 -92.70 -0.72 10.66 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.05 2.12 5.88 -2.39 -0.01 2.10 16 48 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.06 1.81 5.88 -2.39 -0.01 1.79 16 52 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 53 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -81.37 396.73 3.65 -77.72 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: 0.19 Total: 39.44 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 6.50 Total: 22.47 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -4.70 Total: -105.58 kcal Atomic # 8 Polarization: -77.67 SS G_CDS: -0.36 Total: -78.04 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -81.37 3.65 -77.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496045677.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.629 kcal (2) G-P(sol) polarization free energy of solvation -81.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds