Wall clock time and date at job start Sat Apr 11 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.45694 * 2 1 4 4 C 1.53038 * 109.46189 * 240.02653 * 2 1 3 5 5 C 1.53184 * 109.31551 * 178.61180 * 4 2 1 6 6 H 1.08997 * 109.70424 * 294.78043 * 5 4 2 7 7 C 1.52998 * 109.59041 * 174.42005 * 5 4 2 8 8 N 1.46925 * 108.77577 * 54.63556 * 5 4 2 9 9 C 1.34777 * 120.63315 * 126.36563 * 8 5 4 10 10 O 1.21682 * 120.00064 * 355.06990 * 9 8 5 11 11 C 1.46381 * 119.99837 * 175.06482 * 9 8 5 12 12 H 1.07998 * 120.00231 * 5.59404 * 11 9 8 13 13 C 1.40049 * 119.99441 * 185.59130 * 11 9 8 14 14 N 1.30670 * 120.00622 * 6.94662 * 13 11 9 15 15 Si 1.86803 * 119.99552 * 186.94341 * 13 11 9 16 16 H 1.48500 * 109.47176 * 84.99470 * 15 13 11 17 17 H 1.48503 * 109.47508 * 324.99669 * 15 13 11 18 18 H 1.48501 * 109.46979 * 204.99135 * 15 13 11 19 19 C 1.46928 * 118.73853 * 306.64603 * 8 5 4 20 20 C 1.52761 * 109.01014 * 53.30695 * 19 8 5 21 21 H 1.08998 * 109.35988 * 65.49985 * 20 19 8 22 22 C 1.52998 * 109.59295 * 185.54334 * 20 19 8 23 23 N 1.46507 * 109.46877 * 294.97665 * 22 20 19 24 24 C 1.34773 * 120.00407 * 180.02562 * 23 22 20 25 25 O 1.21512 * 119.99447 * 0.02562 * 24 23 22 26 26 O 1.34633 * 120.00122 * 180.02562 * 24 23 22 27 27 C 1.45203 * 116.99679 * 180.02562 * 26 24 23 28 28 C 1.52992 * 109.47616 * 59.99312 * 27 26 24 29 29 C 1.53002 * 109.46901 * 179.97438 * 27 26 24 30 30 C 1.52998 * 109.46803 * 299.99260 * 27 26 24 31 31 H 1.09000 * 109.47243 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47091 * 299.97316 * 1 2 3 33 33 H 1.09003 * 109.47617 * 59.97113 * 1 2 3 34 34 H 1.09008 * 109.49609 * 58.65914 * 4 2 1 35 35 H 1.08999 * 109.49438 * 298.56787 * 4 2 1 36 36 H 1.08997 * 109.47512 * 297.16899 * 7 5 4 37 37 H 1.09006 * 109.46991 * 57.16521 * 7 5 4 38 38 H 1.08996 * 109.47355 * 177.16117 * 7 5 4 39 39 H 0.96989 * 120.00457 * 179.97438 * 14 13 11 40 40 H 1.08995 * 109.59121 * 173.14183 * 19 8 5 41 41 H 1.09006 * 109.58697 * 293.56606 * 19 8 5 42 42 H 1.08998 * 109.47404 * 54.97527 * 22 20 19 43 43 H 1.08999 * 109.47046 * 174.98443 * 22 20 19 44 44 H 0.97001 * 119.99457 * 0.02562 * 23 22 20 45 45 H 1.08999 * 109.47032 * 60.00022 * 28 27 26 46 46 H 1.09003 * 109.47622 * 180.02562 * 28 27 26 47 47 H 1.09004 * 109.47231 * 300.00171 * 28 27 26 48 48 H 1.09001 * 109.47047 * 59.99829 * 29 27 26 49 49 H 1.09004 * 109.47083 * 179.97438 * 29 27 26 50 50 H 1.08999 * 109.46990 * 299.99515 * 29 27 26 51 51 H 1.08995 * 109.47287 * 60.00419 * 30 27 26 52 52 H 1.09004 * 109.47343 * 180.02562 * 30 27 26 53 53 H 1.09001 * 109.47526 * 300.00405 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5713 -0.6887 -1.2642 6 1 3.9163 0.3400 -1.3686 7 6 4.0912 -1.5253 -2.4349 8 7 4.0679 -1.2487 0.0001 9 6 4.9614 -2.2577 0.0003 10 8 5.2968 -2.7736 -1.0495 11 6 5.5285 -2.7329 1.2634 12 1 5.1653 -2.3383 2.2007 13 6 6.5420 -3.6994 1.2561 14 7 7.0760 -4.0779 0.1251 15 14 7.1305 -4.4476 2.8634 16 1 6.2469 -5.5822 3.2341 17 1 7.0893 -3.4183 3.9330 18 1 8.5230 -4.9373 2.7009 19 6 3.5671 -0.6921 1.2643 20 6 2.0398 -0.7206 1.2502 21 1 1.6978 -1.7554 1.2386 22 6 1.5021 -0.0189 2.4990 23 7 1.8910 -0.7771 3.6907 24 6 1.5249 -0.3449 4.9137 25 8 0.8717 0.6734 5.0277 26 8 1.8827 -1.0414 6.0089 27 6 1.4530 -0.5172 7.2929 28 6 -0.0749 -0.4486 7.3304 29 6 1.9494 -1.4362 8.4109 30 6 2.0315 0.8854 7.4906 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3634 0.5143 -0.8897 34 1 1.6571 -0.2210 -2.1398 35 1 1.6978 -1.7557 -1.2380 36 1 3.7940 -2.5651 -2.2987 37 1 3.6713 -1.1466 -3.3668 38 1 5.1785 -1.4602 -2.4735 39 1 7.7781 -4.7469 0.1202 40 1 3.9346 -1.2903 2.0980 41 1 3.9097 0.3372 1.3715 42 1 1.9166 0.9875 2.5573 43 1 0.4150 0.0385 2.4437 44 1 2.4121 -1.5901 3.5996 45 1 -0.4870 -1.4478 7.1896 46 1 -0.3975 -0.0546 8.2942 47 1 -0.4289 0.2060 6.5339 48 1 3.0380 -1.4854 8.3844 49 1 1.6272 -1.0425 9.3749 50 1 1.5370 -2.4353 8.2699 51 1 1.6775 1.5399 6.6941 52 1 1.7093 1.2788 8.4547 53 1 3.1201 0.8366 7.4639 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496046032.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:15 Heat of formation + Delta-G solvation = -141.205597 kcal Electronic energy + Delta-G solvation = -31839.868256 eV Core-core repulsion = 27710.782863 eV Total energy + Delta-G solvation = -4129.085393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79362 -40.92083 -38.85140 -37.92080 -36.03218 -35.08916 -34.62522 -34.29527 -33.28163 -30.04127 -28.31250 -28.26213 -28.12751 -27.92751 -26.16727 -23.90910 -23.29719 -22.51497 -21.45363 -20.72494 -20.46669 -19.10928 -18.36630 -17.64125 -17.45975 -17.23268 -16.54456 -16.37120 -16.06781 -15.79953 -15.50675 -15.45924 -15.16132 -14.66869 -14.56535 -14.39878 -14.21011 -14.11054 -13.63414 -13.32631 -13.25510 -13.16956 -13.11361 -12.91634 -12.84646 -12.82930 -12.81153 -12.74677 -12.54395 -12.41245 -12.34026 -12.31023 -12.21735 -12.00584 -11.81738 -11.67601 -11.33650 -11.26584 -11.19522 -11.02328 -10.87100 -10.13364 -9.19428 -8.92137 -8.20309 -6.76727 1.25238 1.39721 1.40719 1.53691 1.81417 2.24006 2.51412 2.82663 3.21301 3.60074 3.71780 3.79795 3.83135 3.84818 3.91722 3.99487 4.01565 4.25191 4.39258 4.47411 4.51384 4.57281 4.65923 4.67996 4.68152 4.75938 4.80835 4.81015 4.87067 4.88287 4.89667 4.91636 4.95725 4.99284 5.05147 5.13693 5.15634 5.20056 5.30804 5.32177 5.32934 5.41586 5.42822 5.49971 5.58175 5.62677 5.67559 5.81971 6.20488 6.42527 6.51049 6.93825 7.37433 7.50971 8.54953 8.73704 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008917 B = 0.003982 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.308199 B = 7029.192819 C = 9814.009616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 H 0.083 0.917 4 C -0.112 4.112 5 C 0.143 3.857 6 H 0.059 0.941 7 C -0.107 4.107 8 N -0.640 5.640 9 C 0.543 3.457 10 O -0.611 6.611 11 C -0.571 4.571 12 H 0.089 0.911 13 C 0.037 3.963 14 N -0.821 5.821 15 Si 0.982 3.018 16 H -0.263 1.263 17 H -0.250 1.250 18 H -0.277 1.277 19 C 0.126 3.874 20 C -0.098 4.098 21 H 0.071 0.929 22 C 0.153 3.847 23 N -0.706 5.706 24 C 0.647 3.353 25 O -0.590 6.590 26 O -0.375 6.375 27 C 0.123 3.877 28 C -0.178 4.178 29 C -0.138 4.138 30 C -0.180 4.180 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.050 0.950 38 H 0.031 0.969 39 H 0.272 0.728 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.411 0.589 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.104 0.896 50 H 0.067 0.933 51 H 0.064 0.936 52 H 0.092 0.908 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.353 8.815 13.062 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.093 4.093 3 H 0.102 0.898 4 C -0.150 4.150 5 C 0.039 3.961 6 H 0.076 0.924 7 C -0.165 4.165 8 N -0.377 5.377 9 C 0.349 3.651 10 O -0.497 6.497 11 C -0.607 4.607 12 H 0.106 0.894 13 C -0.178 4.178 14 N -0.451 5.451 15 Si 0.802 3.198 16 H -0.188 1.188 17 H -0.173 1.173 18 H -0.202 1.202 19 C 0.002 3.998 20 C -0.118 4.118 21 H 0.089 0.911 22 C 0.031 3.969 23 N -0.366 5.366 24 C 0.401 3.599 25 O -0.482 6.482 26 O -0.289 6.289 27 C 0.086 3.914 28 C -0.235 4.235 29 C -0.195 4.195 30 C -0.237 4.237 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.247 0.753 45 H 0.079 0.921 46 H 0.110 0.890 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.123 0.877 50 H 0.086 0.914 51 H 0.083 0.917 52 H 0.111 0.889 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.364 8.945 12.518 21.048 hybrid contribution 0.999 -0.945 0.185 1.387 sum -13.365 8.001 12.703 20.100 Atomic orbital electron populations 1.21876 0.93269 1.02079 1.02846 1.21002 0.96762 0.99352 0.92210 0.89844 1.21963 0.93541 1.00546 0.98969 1.21108 0.94371 0.96029 0.84591 0.92351 1.21814 0.99874 0.98874 0.95891 1.48060 1.46349 1.37848 1.05449 1.18490 0.77922 0.78434 0.90259 1.90612 1.64589 1.60321 1.34203 1.21495 1.21483 1.24875 0.92883 0.89354 1.26789 0.94904 0.95425 1.00725 1.70137 1.20399 1.25117 1.29430 0.85257 0.77614 0.79180 0.77714 1.18752 1.17299 1.20175 1.21492 0.92900 0.98195 0.87208 1.21661 0.95226 1.00456 0.94484 0.91060 1.21437 1.00618 0.94561 0.80332 1.44924 1.58165 1.30396 1.03092 1.18185 0.78364 0.81512 0.81868 1.90864 1.44252 1.26507 1.86528 1.86344 1.73604 1.53582 1.15398 1.22420 0.95327 0.94972 0.78636 1.22459 0.93624 1.02887 1.04506 1.21900 1.02289 0.99270 0.96031 1.22474 1.01112 0.95843 1.04242 0.93035 0.91359 0.91223 0.89110 0.93372 0.94636 0.93183 0.94993 0.91827 0.90312 0.92750 0.90897 0.89610 0.75315 0.92116 0.88954 0.91662 0.91667 0.87705 0.91369 0.91672 0.88906 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.82 71.98 0.63 -1.93 16 2 C -0.07 -1.70 2.23 -10.77 -0.02 -1.72 16 3 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 4 C -0.11 -3.13 4.65 30.67 0.14 -2.99 16 5 C 0.14 5.31 3.49 44.97 0.16 5.47 16 6 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 7 C -0.11 -4.61 7.59 71.98 0.55 -4.06 16 8 N -0.64 -27.76 2.98 -800.91 -2.39 -30.14 16 9 C 0.54 30.23 7.52 86.36 0.65 30.88 16 10 O -0.61 -38.55 10.49 -4.29 -0.04 -38.60 16 11 C -0.57 -31.15 8.85 24.83 0.22 -30.93 16 12 H 0.09 4.32 5.69 -2.91 -0.02 4.30 16 13 C 0.04 2.01 5.49 85.30 0.47 2.48 16 14 N -0.82 -49.35 11.90 21.84 0.26 -49.09 16 15 Si 0.98 40.49 29.56 68.60 2.03 42.52 16 16 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 17 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 18 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 19 C 0.13 4.27 5.38 86.22 0.46 4.73 16 20 C -0.10 -2.56 1.90 -10.86 -0.02 -2.59 16 21 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 22 C 0.15 3.52 4.83 86.38 0.42 3.94 16 23 N -0.71 -17.95 5.34 -590.85 -3.15 -21.10 16 24 C 0.65 17.97 8.06 129.79 1.05 19.02 16 25 O -0.59 -17.91 11.88 19.80 0.24 -17.68 16 26 O -0.37 -9.80 9.94 -55.42 -0.55 -10.35 16 27 C 0.12 2.50 1.13 -10.80 -0.01 2.48 16 28 C -0.18 -3.34 8.37 71.98 0.60 -2.73 16 29 C -0.14 -2.04 8.85 71.98 0.64 -1.40 16 30 C -0.18 -3.55 8.37 71.98 0.60 -2.95 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.10 6.29 -2.39 -0.02 1.08 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.03 1.74 6.79 -2.39 -0.02 1.72 16 37 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.03 1.61 6.70 -2.39 -0.02 1.59 16 39 H 0.27 14.97 8.29 -92.72 -0.77 14.20 16 40 H 0.08 2.86 4.56 -2.39 -0.01 2.85 16 41 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.09 1.83 6.14 -2.39 -0.01 1.81 16 44 H 0.41 10.43 7.80 -92.71 -0.72 9.70 16 45 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 48 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 50 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.06 1.62 5.88 -2.39 -0.01 1.60 16 52 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 53 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -74.31 401.38 3.10 -71.21 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.18 Total: 35.54 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 6.53 Total: 17.69 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -5.28 Total: -100.34 kcal Atomic # 8 Polarization: -66.26 SS G_CDS: -0.36 Total: -66.62 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -74.31 3.10 -71.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496046032.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.994 kcal (2) G-P(sol) polarization free energy of solvation -74.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds