Wall clock time and date at job start Sat Apr 11 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46997 * 2 1 4 4 N 1.46499 * 109.46736 * 239.99854 * 2 1 3 5 5 C 1.34772 * 120.00047 * 85.00349 * 4 2 1 6 6 O 1.21276 * 120.00040 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99925 * 179.97438 * 5 4 2 8 8 H 1.09005 * 109.47013 * 60.00033 * 7 5 4 9 9 C 1.52997 * 109.47149 * 299.99729 * 7 5 4 10 10 C 1.52996 * 109.46867 * 175.00208 * 9 7 5 11 11 C 1.50709 * 109.46915 * 180.02562 * 10 9 7 12 12 H 1.07993 * 119.99984 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99599 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99312 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00468 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.46755 * 90.00190 * 15 13 11 17 17 H 1.48497 * 109.47161 * 210.00297 * 15 13 11 18 18 H 1.48507 * 109.46938 * 330.00564 * 15 13 11 19 19 N 1.46502 * 109.46583 * 179.97438 * 7 5 4 20 20 C 1.34782 * 120.00313 * 274.99582 * 19 7 5 21 21 O 1.21505 * 119.99528 * 0.02562 * 20 19 7 22 22 O 1.34634 * 119.99745 * 180.02562 * 20 19 7 23 23 C 1.45201 * 116.99454 * 180.02562 * 22 20 19 24 24 C 1.52993 * 109.47327 * 59.99797 * 23 22 20 25 25 C 1.53001 * 109.46921 * 179.97438 * 23 22 20 26 26 C 1.52999 * 109.46928 * 299.99295 * 23 22 20 27 27 C 1.53001 * 109.47016 * 119.99845 * 2 1 3 28 28 C 1.53000 * 117.50223 * 299.99980 * 27 2 1 29 29 C 1.52997 * 117.49889 * 231.37242 * 27 2 1 30 30 H 1.08997 * 109.47409 * 59.99734 * 1 2 3 31 31 H 1.09007 * 109.47169 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47267 * 300.00032 * 1 2 3 33 33 H 0.97005 * 120.00208 * 264.99542 * 4 2 1 34 34 H 1.09000 * 109.47159 * 294.99998 * 9 7 5 35 35 H 1.08997 * 109.46854 * 54.99865 * 9 7 5 36 36 H 1.09000 * 109.47059 * 299.99850 * 10 9 7 37 37 H 1.08997 * 109.47664 * 60.00153 * 10 9 7 38 38 H 0.96999 * 119.99553 * 179.97438 * 14 13 11 39 39 H 0.97006 * 119.99362 * 95.00922 * 19 7 5 40 40 H 1.09001 * 109.47252 * 60.00074 * 24 23 22 41 41 H 1.09004 * 109.47042 * 179.97438 * 24 23 22 42 42 H 1.08995 * 109.47388 * 299.99381 * 24 23 22 43 43 H 1.09001 * 109.47131 * 59.99728 * 25 23 22 44 44 H 1.08998 * 109.47486 * 179.97438 * 25 23 22 45 45 H 1.09001 * 109.47091 * 299.99579 * 25 23 22 46 46 H 1.09006 * 109.46807 * 60.00713 * 26 23 22 47 47 H 1.09004 * 109.47017 * 180.02562 * 26 23 22 48 48 H 1.09001 * 109.47530 * 300.00520 * 26 23 22 49 49 H 1.09002 * 115.55911 * 85.68670 * 27 2 1 50 50 H 1.08990 * 117.49990 * 145.01974 * 28 27 2 51 51 H 1.09004 * 117.49237 * 359.97438 * 28 27 2 52 52 H 1.08999 * 117.49685 * 0.02562 * 29 27 2 53 53 H 1.08997 * 117.50044 * 214.98097 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6498 -0.7287 -3.5875 8 1 1.9775 -1.5510 -3.8325 9 6 4.0525 -1.2787 -3.3214 10 6 4.5127 -2.1053 -4.5238 11 6 5.8941 -2.6476 -4.2614 12 1 6.3939 -2.4245 -3.3305 13 6 6.5202 -3.4275 -5.2105 14 7 7.7259 -3.9003 -4.9817 15 14 5.6559 -3.8127 -6.8211 16 1 5.9861 -2.7670 -7.8223 17 1 6.1070 -5.1364 -7.3207 18 1 4.1876 -3.8409 -6.6005 19 7 2.6984 0.2125 -4.7091 20 6 1.5940 0.4378 -5.4482 21 8 0.5580 -0.1394 -5.1839 22 8 1.6390 1.3025 -6.4792 23 6 0.4118 1.4962 -7.2308 24 6 -0.6795 2.0250 -6.2980 25 6 0.6557 2.5064 -8.3538 26 6 -0.0338 0.1619 -7.8324 27 6 2.0400 -0.7212 1.2493 28 6 1.6357 -0.1495 2.6097 29 6 3.0742 0.0051 2.1116 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 4.7436 -0.4506 -3.1639 35 1 4.0328 -1.9096 -2.4328 36 1 3.8216 -2.9333 -4.6813 37 1 4.5323 -1.4744 -5.4124 38 1 8.1663 -4.4494 -5.6492 39 1 3.5255 0.6735 -4.9198 40 1 -0.3620 2.9756 -5.8695 41 1 -1.6006 2.1709 -6.8624 42 1 -0.8535 1.3057 -5.4978 43 1 1.4334 2.1301 -9.0184 44 1 -0.2653 2.6516 -8.9183 45 1 0.9730 3.4569 -7.9249 46 1 -0.2077 -0.5574 -7.0321 47 1 -0.9547 0.3075 -8.3971 48 1 0.7438 -0.2148 -8.4970 49 1 2.1270 -1.8044 1.1644 50 1 1.4569 -0.8565 3.4196 51 1 1.0068 0.7408 2.6145 52 1 3.3909 0.9970 1.7892 53 1 3.8416 -0.6002 2.5941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496176584.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:26 Heat of formation + Delta-G solvation = -132.823975 kcal Electronic energy + Delta-G solvation = -31285.951901 eV Core-core repulsion = 27157.229963 eV Total energy + Delta-G solvation = -4128.721938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.00382 -41.01408 -39.03269 -38.17009 -36.83766 -35.48750 -35.22410 -34.78923 -33.03908 -31.44581 -29.31439 -28.36093 -28.29376 -26.08278 -25.02829 -23.54493 -23.14076 -22.28633 -21.51787 -21.16314 -21.04839 -19.34775 -19.00048 -18.26335 -17.94751 -17.50183 -16.97541 -16.49940 -16.33397 -15.94415 -15.63991 -15.48664 -15.29754 -15.20128 -15.00590 -14.70246 -14.57628 -14.36160 -14.24713 -13.72525 -13.35389 -13.34042 -13.16179 -13.04081 -12.94004 -12.90968 -12.86102 -12.69217 -12.53791 -12.32118 -12.30519 -12.08007 -11.92137 -11.84368 -11.69032 -11.43148 -11.38213 -11.34417 -11.17711 -11.11898 -11.05529 -10.74259 -10.12062 -10.07914 -8.26911 -6.29760 1.09461 1.36457 1.39103 1.48941 1.54156 1.70473 2.19383 2.36675 2.91171 3.09637 3.15013 3.61803 3.65137 3.75837 3.80269 3.84920 3.95111 3.99331 4.04854 4.12768 4.20173 4.40475 4.46830 4.48799 4.56055 4.61330 4.68515 4.71735 4.76113 4.76554 4.82919 4.83704 4.87472 4.94544 4.98994 5.03032 5.04086 5.17581 5.18538 5.26656 5.28657 5.29070 5.35925 5.39293 5.49620 5.54458 5.56160 5.65648 6.29094 6.34728 6.47889 6.78718 7.16793 7.31957 7.34948 8.89321 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.005906 B = 0.004750 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4740.050968 B = 5893.244221 C =10074.477694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.174 3.826 3 H 0.065 0.935 4 N -0.710 5.710 5 C 0.510 3.490 6 O -0.570 6.570 7 C 0.153 3.847 8 H 0.116 0.884 9 C -0.091 4.091 10 C -0.007 4.007 11 C -0.524 4.524 12 H 0.043 0.957 13 C 0.012 3.988 14 N -0.948 5.948 15 Si 0.938 3.062 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.250 1.250 19 N -0.684 5.684 20 C 0.655 3.345 21 O -0.589 6.589 22 O -0.371 6.371 23 C 0.121 3.879 24 C -0.176 4.176 25 C -0.135 4.135 26 C -0.180 4.180 27 C -0.169 4.169 28 C -0.155 4.155 29 C -0.184 4.184 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.414 0.586 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.023 0.977 37 H 0.018 0.982 38 H 0.265 0.735 39 H 0.415 0.585 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.096 0.904 48 H 0.059 0.941 49 H 0.122 0.878 50 H 0.113 0.887 51 H 0.099 0.901 52 H 0.086 0.914 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.778 9.658 5.127 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.069 3.931 3 H 0.083 0.917 4 N -0.362 5.362 5 C 0.295 3.705 6 O -0.449 6.449 7 C 0.045 3.955 8 H 0.133 0.867 9 C -0.130 4.130 10 C -0.045 4.045 11 C -0.562 4.562 12 H 0.061 0.939 13 C -0.185 4.185 14 N -0.589 5.589 15 Si 0.763 3.237 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.174 1.174 19 N -0.342 5.342 20 C 0.409 3.591 21 O -0.480 6.480 22 O -0.286 6.286 23 C 0.085 3.915 24 C -0.233 4.233 25 C -0.192 4.192 26 C -0.237 4.237 27 C -0.187 4.187 28 C -0.193 4.193 29 C -0.221 4.221 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.251 0.749 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.251 0.749 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.125 0.875 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.114 0.886 48 H 0.078 0.922 49 H 0.140 0.860 50 H 0.131 0.869 51 H 0.118 0.882 52 H 0.104 0.896 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.409 10.158 5.078 21.629 hybrid contribution 0.752 -0.596 -0.760 1.224 sum -17.657 9.561 4.318 20.538 Atomic orbital electron populations 1.22076 0.94487 1.02768 1.01783 1.20474 0.94201 0.95730 0.82650 0.91668 1.45975 1.66696 1.14740 1.08809 1.21183 0.76690 0.87151 0.85484 1.90645 1.51369 1.17435 1.85411 1.20988 1.00634 0.90788 0.83078 0.86661 1.21626 0.90826 0.99857 1.00649 1.19496 0.94727 0.95374 0.94875 1.21402 1.00936 1.30581 1.03247 0.93902 1.25837 0.95232 0.95507 1.01966 1.70047 1.15343 1.36633 1.36859 0.85838 0.80251 0.77640 0.79992 1.19643 1.21244 1.17388 1.44341 1.11966 1.47036 1.30839 1.18098 0.83714 0.78303 0.79023 1.90838 1.30401 1.53947 1.72858 1.86313 1.41615 1.58979 1.41685 1.22473 0.80755 0.97244 0.90992 1.22430 0.99057 1.01227 1.00559 1.21886 1.04404 0.97295 0.95579 1.22484 1.02913 0.96620 1.01702 1.22427 1.05423 0.99983 0.90899 1.23026 0.97266 1.03380 0.95603 1.23098 0.93374 1.01822 1.03845 0.94899 0.91261 0.89927 0.74933 0.91401 0.88515 0.95904 0.96342 0.92617 0.74865 0.92538 0.88595 0.92377 0.91352 0.87469 0.91350 0.92016 0.88569 0.92241 0.86042 0.86889 0.88230 0.89588 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.32 71.98 0.67 -2.47 16 2 C 0.17 3.80 2.81 44.99 0.13 3.93 16 3 H 0.07 1.72 7.33 -2.39 -0.02 1.70 16 4 N -0.71 -17.28 4.94 -442.54 -2.19 -19.47 16 5 C 0.51 16.06 7.15 87.66 0.63 16.69 16 6 O -0.57 -21.75 15.98 -3.02 -0.05 -21.80 16 7 C 0.15 4.85 2.38 44.25 0.11 4.96 16 8 H 0.12 3.67 7.58 -2.38 -0.02 3.65 16 9 C -0.09 -3.07 4.64 30.59 0.14 -2.93 16 10 C -0.01 -0.31 3.93 29.85 0.12 -0.19 16 11 C -0.52 -28.04 9.66 25.60 0.25 -27.79 16 12 H 0.04 2.50 7.99 -2.91 -0.02 2.47 16 13 C 0.01 0.66 5.47 84.65 0.46 1.12 16 14 N -0.95 -57.53 13.96 21.45 0.30 -57.23 16 15 Si 0.94 43.30 27.47 68.60 1.88 45.18 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 18 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 19 N -0.68 -22.88 4.07 -573.71 -2.33 -25.21 16 20 C 0.65 23.05 7.89 129.79 1.02 24.07 16 21 O -0.59 -22.29 11.54 19.82 0.23 -22.06 16 22 O -0.37 -11.77 9.94 -55.44 -0.55 -12.32 16 23 C 0.12 3.03 1.13 -10.80 -0.01 3.01 16 24 C -0.18 -4.29 8.37 71.98 0.60 -3.69 16 25 C -0.13 -2.36 8.85 71.98 0.64 -1.73 16 26 C -0.18 -4.34 8.37 71.98 0.60 -3.74 16 27 C -0.17 -2.80 5.35 -10.79 -0.06 -2.86 16 28 C -0.16 -2.07 9.74 30.60 0.30 -1.77 16 29 C -0.18 -3.03 10.18 30.60 0.31 -2.72 16 30 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.08 1.36 7.29 -2.38 -0.02 1.34 16 33 H 0.41 8.23 7.91 -92.70 -0.73 7.49 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.10 2.92 7.43 -2.39 -0.02 2.91 16 36 H 0.02 0.96 7.20 -2.39 -0.02 0.95 16 37 H 0.02 0.78 7.18 -2.39 -0.02 0.76 16 38 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.41 13.07 8.71 -92.70 -0.81 12.26 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.06 1.80 5.88 -2.39 -0.01 1.79 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.06 1.85 5.88 -2.38 -0.01 1.84 16 47 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 48 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.12 1.78 8.07 -2.39 -0.02 1.76 16 50 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.10 1.26 7.61 -2.38 -0.02 1.24 16 52 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16 53 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -72.70 423.99 2.51 -70.20 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.69 Total: 38.81 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 5.90 Total: 3.90 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -4.22 Total: -101.91 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -0.37 Total: -56.18 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.88 Total: 45.18 kcal Total: -72.70 2.51 -70.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496176584.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.628 kcal (2) G-P(sol) polarization free energy of solvation -72.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds