Wall clock time and date at job start Sat Apr 11 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.88836 * 2 1 4 4 C 1.55160 * 111.00604 * 236.11912 * 2 1 3 5 5 C 1.54318 * 102.94384 * 206.38721 * 4 2 1 6 6 N 1.47024 * 107.27185 * 22.19451 * 5 4 2 7 7 C 1.34773 * 125.64707 * 181.02679 * 6 5 4 8 8 O 1.21285 * 120.00275 * 185.05571 * 7 6 5 9 9 C 1.50696 * 120.00413 * 5.04579 * 7 6 5 10 10 H 1.09001 * 109.47281 * 325.57604 * 9 7 6 11 11 C 1.53005 * 109.47136 * 85.56797 * 9 7 6 12 12 C 1.52995 * 109.47368 * 185.44810 * 11 9 7 13 13 C 1.50704 * 109.46972 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99878 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00136 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99800 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00268 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47242 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.47178 * 300.00021 * 17 15 13 20 20 H 1.48501 * 109.47022 * 59.99809 * 17 15 13 21 21 N 1.46501 * 109.47908 * 205.56940 * 9 7 6 22 22 C 1.34774 * 119.99786 * 85.00072 * 21 9 7 23 23 O 1.21510 * 120.00232 * 0.02562 * 22 21 9 24 24 O 1.34631 * 120.00003 * 180.02562 * 22 21 9 25 25 C 1.45199 * 117.00436 * 179.97438 * 24 22 21 26 26 C 1.53001 * 109.47170 * 59.99723 * 25 24 22 27 27 C 1.53001 * 109.47431 * 179.97438 * 25 24 22 28 28 C 1.53005 * 109.47038 * 299.99830 * 25 24 22 29 29 C 1.47416 * 108.70025 * 1.28416 * 6 5 4 30 30 H 1.09002 * 109.47020 * 182.42687 * 1 2 3 31 31 H 1.08997 * 109.47034 * 302.42438 * 1 2 3 32 32 H 1.08998 * 109.47397 * 62.42765 * 1 2 3 33 33 H 1.08993 * 110.71963 * 88.01852 * 4 2 1 34 34 H 1.09006 * 110.71804 * 324.75389 * 4 2 1 35 35 H 1.08993 * 109.88505 * 262.77344 * 5 4 2 36 36 H 1.09001 * 110.01202 * 141.67983 * 5 4 2 37 37 H 1.09004 * 109.47071 * 65.44529 * 11 9 7 38 38 H 1.09002 * 109.47031 * 305.45204 * 11 9 7 39 39 H 1.08992 * 109.47600 * 60.00031 * 12 11 9 40 40 H 1.09004 * 109.46747 * 299.99769 * 12 11 9 41 41 H 0.96999 * 120.00055 * 359.97438 * 16 15 13 42 42 H 0.96995 * 119.99694 * 265.00362 * 21 9 7 43 43 H 1.09000 * 109.46926 * 59.99605 * 26 25 24 44 44 H 1.09000 * 109.47368 * 180.02562 * 26 25 24 45 45 H 1.09004 * 109.47007 * 300.00355 * 26 25 24 46 46 H 1.08993 * 109.47391 * 59.99897 * 27 25 24 47 47 H 1.09004 * 109.47250 * 180.02562 * 27 25 24 48 48 H 1.09001 * 109.47014 * 299.99698 * 27 25 24 49 49 H 1.09004 * 109.47019 * 59.99719 * 28 25 24 50 50 H 1.09004 * 109.46719 * 179.97438 * 28 25 24 51 51 H 1.08993 * 109.46952 * 299.99593 * 28 25 24 52 52 H 1.09004 * 110.36883 * 94.48770 * 29 6 5 53 53 H 1.09004 * 110.36654 * 216.80095 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0862 -0.8075 -1.2025 5 6 3.4678 -1.2731 -0.6969 6 7 3.4280 -1.2423 0.7725 7 6 4.4490 -1.5604 1.5928 8 8 4.2768 -1.5876 2.7930 9 6 5.8046 -1.8825 1.0187 10 1 5.6826 -2.3946 0.0643 11 6 6.5891 -0.5863 0.8052 12 6 7.9091 -0.8997 0.0981 13 6 8.6821 0.3769 -0.1115 14 1 8.2725 1.3177 0.2255 15 6 9.9121 0.3438 -0.7336 16 7 10.4111 -0.8019 -1.1435 17 14 10.8699 1.9263 -0.9941 18 1 12.1518 1.6219 -1.6792 19 1 10.0701 2.8571 -1.8302 20 1 11.1496 2.5577 0.3205 21 7 6.5353 -2.7482 1.9476 22 6 6.3475 -4.0824 1.9147 23 8 5.5725 -4.5673 1.1142 24 8 7.0186 -4.8779 2.7686 25 6 6.7663 -6.3049 2.6769 26 6 7.1366 -6.7993 1.2771 27 6 7.6129 -7.0405 3.7176 28 6 5.2839 -6.5786 2.9389 29 6 2.0844 -0.8118 1.2000 30 1 -0.3633 -1.0268 0.0435 31 1 -0.3633 0.5510 0.8674 32 1 -0.3634 0.4757 -0.9109 33 1 2.1915 -0.1694 -2.0798 34 1 1.4471 -1.6630 -1.4212 35 1 4.2425 -0.5983 -1.0609 36 1 3.6685 -2.2877 -1.0410 37 1 6.7949 -0.1230 1.7702 38 1 6.0017 0.0971 0.1920 39 1 7.7035 -1.3630 -0.8668 40 1 8.4965 -1.5831 0.7115 41 1 9.9139 -1.6237 -1.0079 42 1 7.1542 -2.3611 2.5863 43 1 8.1927 -6.6042 1.0905 44 1 6.9469 -7.8705 1.2081 45 1 6.5338 -6.2753 0.5354 46 1 7.3496 -6.6884 4.7149 47 1 7.4239 -8.1118 3.6484 48 1 8.6689 -6.8455 3.5305 49 1 4.6811 -6.0546 2.1971 50 1 5.0945 -7.6498 2.8696 51 1 5.0202 -6.2264 3.9360 52 1 1.4537 -1.6784 1.3985 53 1 2.1524 -0.1803 2.0858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496721542.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:25 Heat of formation + Delta-G solvation = -161.408583 kcal Electronic energy + Delta-G solvation = -31653.159060 eV Core-core repulsion = 27523.197600 eV Total energy + Delta-G solvation = -4129.961460 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.14427 -41.23883 -39.19759 -38.23694 -37.00391 -35.55214 -34.98471 -34.05707 -32.71221 -30.63964 -29.43992 -28.41609 -28.34319 -27.28313 -25.57416 -24.23001 -23.62862 -22.63933 -21.32227 -21.21261 -20.48697 -19.43922 -19.02958 -18.26936 -17.94140 -17.35139 -17.16849 -16.87440 -16.14172 -15.90096 -15.62255 -15.50310 -15.32686 -15.17079 -14.76712 -14.69931 -14.43112 -14.36703 -14.10153 -13.69720 -13.56520 -13.40818 -13.40342 -13.20650 -12.97456 -12.92354 -12.84019 -12.72249 -12.64424 -12.59956 -12.39528 -12.15922 -12.03805 -12.00166 -11.90001 -11.64251 -11.58999 -11.49394 -11.43090 -11.22196 -10.73469 -10.52886 -10.22688 -9.80333 -8.65887 -6.37396 0.93228 1.37138 1.53486 1.55490 1.62963 1.81940 1.95123 2.58509 3.04345 3.18795 3.24415 3.58985 3.64190 3.67761 3.70600 3.74837 3.88091 3.89516 3.90757 4.18922 4.31941 4.36043 4.48464 4.52415 4.55324 4.56493 4.57239 4.68512 4.70907 4.72316 4.78266 4.81562 4.82423 4.84255 4.88986 4.94008 4.97743 5.10507 5.12682 5.23189 5.23518 5.27625 5.28542 5.29345 5.39121 5.44506 5.46521 5.96956 6.18404 6.21355 6.27635 6.57975 6.89751 7.17157 7.44078 8.74512 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.005679 B = 0.004875 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4928.838906 B = 5742.586965 C = 9858.970722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 H 0.088 0.912 4 C -0.116 4.116 5 C 0.084 3.916 6 N -0.615 5.615 7 C 0.521 3.479 8 O -0.573 6.573 9 C 0.161 3.839 10 H 0.103 0.897 11 C -0.086 4.086 12 C 0.020 3.980 13 C -0.616 4.616 14 H 0.054 0.946 15 C -0.035 4.035 16 N -0.936 5.936 17 Si 1.115 2.885 18 H -0.287 1.287 19 H -0.266 1.266 20 H -0.271 1.271 21 N -0.685 5.685 22 C 0.653 3.347 23 O -0.588 6.588 24 O -0.370 6.370 25 C 0.120 3.880 26 C -0.180 4.180 27 C -0.134 4.134 28 C -0.175 4.175 29 C 0.103 3.897 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.087 0.913 39 H -0.007 1.007 40 H -0.004 1.004 41 H 0.255 0.745 42 H 0.414 0.586 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.110 0.890 48 H 0.066 0.934 49 H 0.056 0.944 50 H 0.099 0.901 51 H 0.057 0.943 52 H 0.068 0.932 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.193 -6.280 3.224 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 H 0.106 0.894 4 C -0.154 4.154 5 C -0.038 4.038 6 N -0.348 5.348 7 C 0.309 3.691 8 O -0.453 6.453 9 C 0.053 3.947 10 H 0.120 0.880 11 C -0.124 4.124 12 C -0.017 4.017 13 C -0.654 4.654 14 H 0.073 0.927 15 C -0.233 4.233 16 N -0.574 5.574 17 Si 0.936 3.064 18 H -0.212 1.212 19 H -0.191 1.191 20 H -0.196 1.196 21 N -0.343 5.343 22 C 0.407 3.593 23 O -0.480 6.480 24 O -0.285 6.285 25 C 0.084 3.916 26 C -0.237 4.237 27 C -0.191 4.191 28 C -0.233 4.233 29 C -0.019 4.019 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.011 0.989 40 H 0.015 0.985 41 H 0.064 0.936 42 H 0.250 0.750 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.128 0.872 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.118 0.882 51 H 0.076 0.924 52 H 0.087 0.913 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.193 -6.044 2.925 17.530 hybrid contribution -0.874 -0.724 0.942 1.475 sum -17.067 -6.768 3.868 18.763 Atomic orbital electron populations 1.21668 0.91789 1.02670 1.03132 1.22404 0.97562 0.98942 0.92672 0.89360 1.22737 0.93102 1.01001 0.98521 1.22405 1.00990 1.02110 0.78330 1.48533 1.12091 1.66066 1.08133 1.20882 0.86097 0.76003 0.86162 1.90632 1.84426 1.54051 1.16143 1.20873 0.88342 0.92997 0.92454 0.87969 1.21555 0.96463 0.92833 1.01577 1.19070 0.92384 0.96290 0.93958 1.22408 1.06196 0.94535 1.42282 0.92736 1.27334 0.97359 1.05592 0.93010 1.70924 1.41088 0.99182 1.46180 0.82960 0.74969 0.70965 0.77476 1.21217 1.19145 1.19629 1.44386 1.46666 1.02965 1.40281 1.18112 0.78927 0.82656 0.79632 1.90835 1.40560 1.74669 1.41901 1.86326 1.64231 1.21746 1.56201 1.22541 0.97217 0.73796 0.98052 1.22479 1.01829 1.03517 0.95852 1.21893 0.99423 1.00700 0.97118 1.22439 0.94517 1.04208 1.02097 1.22553 0.81965 0.98515 0.98876 0.92084 0.91968 0.90447 0.87656 0.89242 0.90779 0.91374 0.91643 0.89504 0.98900 0.98537 0.93598 0.75015 0.92533 0.88225 0.92205 0.91220 0.87167 0.91517 0.92457 0.88237 0.92359 0.91347 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.30 71.98 0.67 -0.86 16 2 C -0.10 -1.56 3.65 -9.32 -0.03 -1.59 16 3 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.12 -1.80 6.42 31.78 0.20 -1.60 16 5 C 0.08 1.97 6.10 86.73 0.53 2.50 16 6 N -0.61 -18.11 3.32 -811.38 -2.70 -20.81 16 7 C 0.52 19.20 7.01 87.66 0.61 19.81 16 8 O -0.57 -24.42 16.92 -3.04 -0.05 -24.47 16 9 C 0.16 6.05 1.92 44.25 0.09 6.14 16 10 H 0.10 3.91 6.72 -2.39 -0.02 3.90 16 11 C -0.09 -3.44 4.67 30.59 0.14 -3.29 16 12 C 0.02 1.00 4.17 29.85 0.12 1.12 16 13 C -0.62 -33.86 9.11 25.60 0.23 -33.63 16 14 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 15 C -0.04 -1.99 5.46 84.65 0.46 -1.53 16 16 N -0.94 -57.31 13.65 21.45 0.29 -57.02 16 17 Si 1.11 49.15 29.90 68.60 2.05 51.20 16 18 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 21 N -0.68 -26.37 4.18 -573.73 -2.40 -28.76 16 22 C 0.65 25.26 8.01 129.79 1.04 26.30 16 23 O -0.59 -23.83 11.54 19.81 0.23 -23.60 16 24 O -0.37 -12.83 9.94 -55.40 -0.55 -13.38 16 25 C 0.12 3.22 1.13 -10.79 -0.01 3.21 16 26 C -0.18 -4.75 8.37 71.98 0.60 -4.15 16 27 C -0.13 -2.58 8.85 71.98 0.64 -1.94 16 28 C -0.18 -4.45 8.37 71.98 0.60 -3.85 16 29 C 0.10 2.44 6.36 86.93 0.55 2.99 16 30 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.21 8.04 -2.38 -0.02 1.19 16 35 H 0.07 1.79 7.65 -2.39 -0.02 1.77 16 36 H 0.07 1.68 7.99 -2.39 -0.02 1.66 16 37 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.09 3.24 7.65 -2.39 -0.02 3.22 16 39 H -0.01 -0.39 8.01 -2.39 -0.02 -0.41 16 40 H 0.00 -0.20 7.63 -2.38 -0.02 -0.21 16 41 H 0.25 15.86 7.22 -92.71 -0.67 15.19 16 42 H 0.41 15.39 8.71 -92.71 -0.81 14.59 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.06 1.94 5.88 -2.38 -0.01 1.93 16 46 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.06 1.82 5.88 -2.38 -0.01 1.81 16 50 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 51 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.07 1.58 8.01 -2.39 -0.02 1.57 16 53 H 0.06 1.67 8.09 -2.38 -0.02 1.65 16 Total: -1.00 -74.63 420.72 3.50 -71.12 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: 0.17 Total: 36.09 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 6.45 Total: 9.63 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -4.80 Total: -106.59 kcal Atomic # 8 Polarization: -61.08 SS G_CDS: -0.37 Total: -61.45 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.05 Total: 51.20 kcal Total: -74.63 3.50 -71.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496721542.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.286 kcal (2) G-P(sol) polarization free energy of solvation -74.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds