Wall clock time and date at job start Sat Apr 11 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.99375 * 2 1 4 4 C 1.54316 * 109.98486 * 238.97200 * 2 1 3 5 5 C 1.55164 * 102.86122 * 263.04661 * 4 2 1 6 6 H 1.09000 * 111.00339 * 82.38000 * 5 4 2 7 7 C 1.52995 * 111.03687 * 206.21292 * 5 4 2 8 8 N 1.46496 * 109.47184 * 178.66879 * 7 5 4 9 9 C 1.34781 * 120.00026 * 180.02562 * 8 7 5 10 10 O 1.21507 * 119.99606 * 0.02562 * 9 8 7 11 11 O 1.34639 * 119.99808 * 180.02562 * 9 8 7 12 12 C 1.45203 * 116.99677 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47170 * 59.99936 * 12 11 9 14 14 C 1.52999 * 109.46691 * 179.97438 * 12 11 9 15 15 C 1.52998 * 109.47349 * 299.99881 * 12 11 9 16 16 C 1.54912 * 101.58148 * 324.30593 * 5 4 2 17 17 N 1.47022 * 109.88323 * 121.09676 * 2 1 3 18 18 C 1.34780 * 125.64445 * 300.51416 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.71250 * 18 17 2 20 20 C 1.50701 * 119.99795 * 179.71926 * 18 17 2 21 21 C 1.52997 * 109.47212 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.47466 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99890 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00428 * 179.97438 * 22 21 20 25 25 N 1.31519 * 119.99563 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00432 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46838 * 89.99826 * 26 24 22 28 28 H 1.48497 * 109.47419 * 209.99978 * 26 24 22 29 29 H 1.48499 * 109.47011 * 330.00539 * 26 24 22 30 30 H 1.09000 * 109.46764 * 300.35469 * 1 2 3 31 31 H 1.08995 * 109.47173 * 60.36226 * 1 2 3 32 32 H 1.09005 * 109.47008 * 180.36427 * 1 2 3 33 33 H 1.08999 * 110.92415 * 144.63560 * 4 2 1 34 34 H 1.08995 * 110.59158 * 21.29992 * 4 2 1 35 35 H 1.08996 * 109.47148 * 298.67469 * 7 5 4 36 36 H 1.09003 * 109.46795 * 58.67024 * 7 5 4 37 37 H 0.96995 * 120.00009 * 359.97438 * 8 7 5 38 38 H 1.09008 * 109.47334 * 59.99884 * 13 12 11 39 39 H 1.09002 * 109.47341 * 179.97438 * 13 12 11 40 40 H 1.08997 * 109.47218 * 300.00057 * 13 12 11 41 41 H 1.08997 * 109.47046 * 60.00313 * 14 12 11 42 42 H 1.09005 * 109.46505 * 180.02562 * 14 12 11 43 43 H 1.08996 * 109.47555 * 299.99779 * 14 12 11 44 44 H 1.09000 * 109.46875 * 59.99523 * 15 12 11 45 45 H 1.08993 * 109.47215 * 180.02562 * 15 12 11 46 46 H 1.09004 * 109.47217 * 300.00643 * 15 12 11 47 47 H 1.09003 * 110.36129 * 278.17344 * 16 5 4 48 48 H 1.08998 * 110.46118 * 155.89892 * 16 5 4 49 49 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 50 50 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 51 51 H 1.09002 * 109.47153 * 299.99998 * 21 20 18 52 52 H 1.08998 * 109.47533 * 59.99628 * 21 20 18 53 53 H 0.97002 * 119.99731 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0575 -0.7475 -1.2427 5 6 2.3476 -2.1693 -0.6932 6 1 1.4382 -2.7695 -0.6628 7 6 3.4331 -2.8654 -1.5166 8 7 3.7020 -4.1894 -0.9502 9 6 4.6287 -4.9886 -1.5152 10 8 5.2415 -4.6105 -2.4940 11 8 4.8753 -6.2056 -0.9950 12 6 5.8860 -7.0123 -1.6554 13 6 7.2259 -6.2741 -1.6279 14 6 6.0264 -8.3505 -0.9272 15 6 5.4711 -7.2620 -3.1068 16 6 2.8523 -1.8530 0.7368 17 7 2.0301 -0.7141 1.1839 18 6 1.7742 -0.3853 2.4657 19 8 1.0809 0.5773 2.7181 20 6 2.3499 -1.2135 3.5853 21 6 1.9110 -0.6294 4.9296 22 6 2.4861 -1.4580 6.0492 23 1 3.1033 -2.3153 5.8245 24 6 2.2252 -1.1212 7.3605 25 7 1.4739 -0.0769 7.6341 26 14 2.9375 -2.1487 8.7484 27 1 4.2656 -1.6073 9.1338 28 1 2.0247 -2.1006 9.9188 29 1 3.0886 -3.5550 8.2959 30 1 -0.3633 0.5193 0.8868 31 1 -0.3633 0.5082 -0.8932 32 1 -0.3633 -1.0277 0.0065 33 1 2.9708 -0.2849 -1.6168 34 1 1.2951 -0.7831 -2.0209 35 1 3.0947 -2.9728 -2.5471 36 1 4.3450 -2.2686 -1.4940 37 1 3.2136 -4.4907 -0.1682 38 1 7.5216 -6.0962 -0.5938 39 1 7.9847 -6.8798 -2.1233 40 1 7.1261 -5.3206 -2.1464 41 1 5.0720 -8.8765 -0.9465 42 1 6.7855 -8.9558 -1.4228 43 1 6.3223 -8.1723 0.1066 44 1 5.3713 -6.3084 -3.6253 45 1 6.2296 -7.8678 -3.6024 46 1 4.5165 -7.7878 -3.1265 47 1 3.9059 -1.5745 0.7142 48 1 2.7013 -2.7105 1.3925 49 1 1.9912 -2.2393 3.5000 50 1 3.4381 -1.2028 3.5229 51 1 2.2700 0.3962 5.0147 52 1 0.8229 -0.6397 4.9924 53 1 1.2907 0.1603 8.5567 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496791352.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:37 Heat of formation + Delta-G solvation = -161.053468 kcal Electronic energy + Delta-G solvation = -30283.842058 eV Core-core repulsion = 26153.895997 eV Total energy + Delta-G solvation = -4129.946061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.78377 -41.26137 -39.17197 -38.16822 -36.00875 -35.58429 -34.90829 -33.56092 -32.48180 -32.10702 -28.30800 -28.25248 -27.91522 -27.29768 -26.69344 -24.33097 -23.29175 -22.24137 -21.51313 -20.81369 -19.93883 -19.12788 -18.71186 -17.76360 -17.51692 -17.32785 -17.03257 -16.60467 -16.46005 -16.08602 -15.70468 -15.49908 -15.29692 -14.98096 -14.56915 -14.40915 -14.35151 -14.16668 -13.86641 -13.74127 -13.45637 -13.28276 -13.24027 -13.11281 -12.92201 -12.85214 -12.82207 -12.80774 -12.74199 -12.48045 -12.40142 -12.28474 -12.05205 -11.93487 -11.78379 -11.60565 -11.58111 -11.33016 -11.30916 -11.05571 -10.64812 -10.57752 -10.15511 -9.65004 -8.18821 -6.33107 1.23739 1.41480 1.44336 1.55283 1.69594 1.82752 2.01855 2.42622 3.14114 3.15767 3.40640 3.52392 3.77539 3.80237 3.85425 4.00078 4.01379 4.12203 4.23667 4.33895 4.42113 4.45410 4.47844 4.57619 4.62524 4.66596 4.69465 4.74160 4.76009 4.81985 4.84202 4.89040 4.92172 4.92657 4.99877 5.02265 5.09166 5.15019 5.23117 5.29722 5.33142 5.36053 5.42536 5.47281 5.59268 5.60752 5.64598 5.83645 6.16178 6.44081 6.51904 6.85353 7.27443 7.37343 7.39558 8.93924 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008561 B = 0.002615 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3270.010925 B =10705.821942 C =13626.983515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 H 0.059 0.941 4 C -0.103 4.103 5 C -0.098 4.098 6 H 0.107 0.893 7 C 0.156 3.844 8 N -0.703 5.703 9 C 0.645 3.355 10 O -0.592 6.592 11 O -0.372 6.372 12 C 0.126 3.874 13 C -0.180 4.180 14 C -0.138 4.138 15 C -0.178 4.178 16 C 0.094 3.906 17 N -0.618 5.618 18 C 0.523 3.477 19 O -0.585 6.585 20 C -0.112 4.112 21 C 0.044 3.956 22 C -0.542 4.542 23 H 0.076 0.924 24 C -0.007 4.007 25 N -0.938 5.938 26 Si 0.974 3.026 27 H -0.272 1.272 28 H -0.286 1.286 29 H -0.254 1.254 30 H 0.028 0.972 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.416 0.584 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.102 0.898 50 H 0.097 0.903 51 H -0.020 1.020 52 H -0.018 1.018 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.027 -15.978 -26.675 32.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.077 0.923 4 C -0.141 4.141 5 C -0.117 4.117 6 H 0.125 0.875 7 C 0.034 3.966 8 N -0.364 5.364 9 C 0.398 3.602 10 O -0.484 6.484 11 O -0.287 6.287 12 C 0.089 3.911 13 C -0.238 4.238 14 C -0.195 4.195 15 C -0.235 4.235 16 C -0.028 4.028 17 N -0.353 5.353 18 C 0.314 3.686 19 O -0.465 6.465 20 C -0.152 4.152 21 C 0.007 3.993 22 C -0.580 4.580 23 H 0.094 0.906 24 C -0.205 4.205 25 N -0.578 5.578 26 Si 0.798 3.202 27 H -0.198 1.198 28 H -0.211 1.211 29 H -0.178 1.178 30 H 0.047 0.953 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.131 0.869 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.252 0.748 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.119 0.881 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.106 0.894 49 H 0.120 0.880 50 H 0.115 0.885 51 H -0.002 1.002 52 H 0.000 1.000 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.924 -15.235 -26.823 31.849 hybrid contribution -0.215 0.215 1.566 1.595 sum 7.710 -15.020 -25.257 30.380 Atomic orbital electron populations 1.22099 0.95038 1.02353 1.02146 1.21728 0.94727 0.96397 0.85124 0.92253 1.22678 1.03491 0.92600 0.95310 1.22527 0.99157 0.97216 0.92814 0.87457 1.21280 0.98004 0.79984 0.97330 1.44771 1.40354 1.16917 1.34312 1.18271 0.80211 0.80384 0.81303 1.90893 1.52986 1.75881 1.28590 1.86328 1.58276 1.26635 1.57453 1.22366 0.85495 0.90198 0.93006 1.22480 0.96199 1.02295 1.02787 1.21896 1.03842 0.92730 1.01077 1.22458 1.02681 1.03418 0.94954 1.22670 0.95237 0.88760 0.96130 1.48678 1.51226 1.31067 1.04280 1.21004 0.79550 0.84581 0.83448 1.90644 1.40736 1.31033 1.84078 1.21593 1.01835 0.99649 0.92126 1.18672 0.94619 0.94578 0.91478 1.21687 1.31507 1.13166 0.91616 0.90634 1.26149 0.95464 0.96489 1.02358 1.70185 1.39255 1.28416 1.19925 0.85320 0.77968 0.79388 0.77573 1.19751 1.21148 1.17752 0.95258 0.89294 0.91894 0.88612 0.86943 0.89586 0.90825 0.74791 0.92301 0.89285 0.91633 0.91204 0.88103 0.91544 0.91615 0.89322 0.91944 0.90322 0.89428 0.88029 0.88484 1.00182 0.99966 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 9.07 71.98 0.65 -3.06 16 2 C 0.12 2.75 3.48 45.34 0.16 2.91 16 3 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 4 C -0.10 -1.20 5.97 31.78 0.19 -1.01 16 5 C -0.10 -1.10 3.10 -9.40 -0.03 -1.13 16 6 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 7 C 0.16 1.77 5.13 86.38 0.44 2.21 16 8 N -0.70 -9.79 5.41 -590.86 -3.20 -12.99 16 9 C 0.64 12.59 8.06 129.79 1.05 13.64 16 10 O -0.59 -14.09 11.88 19.82 0.24 -13.85 16 11 O -0.37 -7.00 9.94 -55.48 -0.55 -7.55 16 12 C 0.13 1.91 1.13 -10.79 -0.01 1.89 16 13 C -0.18 -2.79 8.37 71.98 0.60 -2.18 16 14 C -0.14 -1.42 8.85 71.98 0.64 -0.78 16 15 C -0.18 -2.53 8.37 71.98 0.60 -1.92 16 16 C 0.09 1.69 5.87 86.86 0.51 2.20 16 17 N -0.62 -17.10 3.08 -788.08 -2.43 -19.53 16 18 C 0.52 20.91 7.63 87.66 0.67 21.58 16 19 O -0.59 -29.40 14.89 -3.03 -0.05 -29.45 16 20 C -0.11 -4.63 4.64 29.85 0.14 -4.49 16 21 C 0.04 2.50 4.26 29.85 0.13 2.63 16 22 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 23 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 24 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 25 N -0.94 -60.01 13.29 21.45 0.28 -59.72 16 26 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 28 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 29 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 30 H 0.03 0.95 6.75 -2.39 -0.02 0.94 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.10 0.91 8.04 -2.39 -0.02 0.89 16 34 H 0.11 0.83 7.83 -2.39 -0.02 0.81 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.93 8.10 -2.39 -0.02 0.91 16 37 H 0.42 4.60 8.45 -92.71 -0.78 3.81 16 38 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.33 5.88 -2.39 -0.01 1.32 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.06 1.26 5.88 -2.39 -0.01 1.24 16 45 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 47 H 0.08 1.35 8.00 -2.39 -0.02 1.33 16 48 H 0.09 1.46 7.47 -2.39 -0.02 1.45 16 49 H 0.10 3.66 7.84 -2.39 -0.02 3.64 16 50 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 51 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 52 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 53 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -83.23 420.18 2.85 -80.38 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.10 Total: 14.57 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 6.43 Total: 1.67 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -5.34 Total: -92.24 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -0.36 Total: -50.85 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -83.23 2.85 -80.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496791352.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.669 kcal (2) G-P(sol) polarization free energy of solvation -83.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds