Wall clock time and date at job start Sat Apr 11 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.52382 * 2 1 4 4 C 1.53191 * 109.49730 * 120.08243 * 2 1 3 5 5 N 1.46928 * 108.77499 * 174.58203 * 4 2 1 6 6 C 1.34775 * 120.62574 * 126.38873 * 5 4 2 7 7 O 1.21514 * 120.00541 * 0.02562 * 6 5 4 8 8 O 1.34639 * 119.99830 * 180.02562 * 6 5 4 9 9 C 1.45202 * 117.00390 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46936 * 59.99468 * 9 8 6 11 11 C 1.52995 * 109.47270 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.46670 * 300.00003 * 9 8 6 13 13 C 1.46931 * 118.76737 * 306.41453 * 5 4 2 14 14 C 1.53196 * 108.77131 * 53.55408 * 13 5 4 15 15 C 1.53039 * 109.33748 * 305.41286 * 14 13 5 16 16 H 1.08999 * 109.46056 * 181.35550 * 15 14 13 17 17 N 1.46494 * 109.46065 * 301.33071 * 15 14 13 18 18 C 1.34777 * 119.99892 * 274.99944 * 17 15 14 19 19 O 1.21282 * 120.00240 * 359.97438 * 18 17 15 20 20 C 1.50707 * 119.99887 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.46752 * 180.02562 * 20 18 17 22 22 C 1.50701 * 109.47027 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00051 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00374 * 179.97438 * 22 21 20 25 25 N 1.31519 * 119.99681 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00293 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47026 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47102 * 119.99786 * 26 24 22 29 29 H 1.48499 * 109.46927 * 240.00235 * 26 24 22 30 30 H 1.08998 * 109.47042 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46986 * 300.07643 * 1 2 3 32 32 H 1.08997 * 109.47167 * 60.07851 * 1 2 3 33 33 H 1.08997 * 109.59002 * 294.37021 * 4 2 1 34 34 H 1.09001 * 109.59029 * 54.65802 * 4 2 1 35 35 H 1.08998 * 109.46737 * 60.01001 * 10 9 8 36 36 H 1.09007 * 109.46732 * 180.02562 * 10 9 8 37 37 H 1.08997 * 109.47282 * 300.00467 * 10 9 8 38 38 H 1.09002 * 109.47227 * 60.00031 * 11 9 8 39 39 H 1.09004 * 109.46987 * 180.02562 * 11 9 8 40 40 H 1.08999 * 109.47018 * 299.99151 * 11 9 8 41 41 H 1.09002 * 109.47571 * 60.00062 * 12 9 8 42 42 H 1.09000 * 109.47334 * 179.97438 * 12 9 8 43 43 H 1.09002 * 109.47393 * 299.99703 * 12 9 8 44 44 H 1.08996 * 109.56502 * 293.78102 * 13 5 4 45 45 H 1.09001 * 109.61713 * 173.35524 * 13 5 4 46 46 H 1.09002 * 109.49815 * 185.44599 * 14 13 5 47 47 H 1.09000 * 109.49595 * 65.37996 * 14 13 5 48 48 H 0.96998 * 120.00363 * 95.00221 * 17 15 14 49 49 H 1.09001 * 109.46595 * 299.99567 * 20 18 17 50 50 H 1.08994 * 109.47270 * 59.99614 * 20 18 17 51 51 H 1.09001 * 109.47030 * 299.99071 * 21 20 18 52 52 H 1.08994 * 109.47735 * 59.99670 * 21 20 18 53 53 H 0.96999 * 119.99571 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8292 1.1695 6 6 4.2811 -0.3861 2.1780 7 8 3.7722 0.1059 3.1657 8 8 5.6208 -0.4885 2.0911 9 6 6.3943 0.0089 3.2148 10 6 6.0046 -0.7569 4.4809 11 6 7.8853 -0.1908 2.9359 12 6 6.1077 1.4988 3.4115 13 6 4.1059 -1.4263 -0.0309 14 6 3.5708 -0.6950 -1.2661 15 6 2.0408 -0.7231 -1.2484 16 1 1.6581 -0.2243 -2.1388 17 7 1.5783 -2.1130 -1.2308 18 6 1.4489 -2.7948 -2.3862 19 8 1.7148 -2.2574 -3.4405 20 6 0.9726 -4.2245 -2.3682 21 6 0.9152 -4.7609 -3.8000 22 6 0.4395 -6.1908 -3.7820 23 1 0.2015 -6.6689 -2.8433 24 6 0.3072 -6.8883 -4.9639 25 7 0.5966 -6.3059 -6.1071 26 14 -0.2831 -8.6604 -4.9416 27 1 -0.5404 -9.0789 -3.5402 28 1 -1.5365 -8.7746 -5.7298 29 1 0.7577 -9.5363 -5.5372 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.7639 -0.1580 2.1389 34 1 1.6033 -1.7207 1.2993 35 1 6.2088 -1.8183 4.3407 36 1 6.5850 -0.3832 5.3245 37 1 4.9424 -0.6142 4.6793 38 1 8.1625 0.3551 2.0341 39 1 8.4659 0.1822 3.7797 40 1 8.0898 -1.2522 2.7956 41 1 5.0455 1.6415 3.6100 42 1 6.6880 1.8722 4.2553 43 1 6.3853 2.0444 2.5096 44 1 3.8387 -2.4815 -0.0866 45 1 5.1902 -1.3237 0.0133 46 1 3.9334 -1.1897 -2.1672 47 1 3.9159 0.3388 -1.2547 48 1 1.3653 -2.5427 -0.3877 49 1 1.6630 -4.8300 -1.7811 50 1 -0.0209 -4.2709 -1.9223 51 1 0.2250 -4.1555 -4.3874 52 1 1.9089 -4.7146 -4.2455 53 1 0.5038 -6.7967 -6.9385 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496819355.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:55 Heat of formation + Delta-G solvation = -158.002569 kcal Electronic energy + Delta-G solvation = -31108.611944 eV Core-core repulsion = 26978.798180 eV Total energy + Delta-G solvation = -4129.813764 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.09984 -41.11273 -39.48588 -37.80386 -35.85893 -35.51702 -34.74156 -33.80270 -33.09131 -31.95469 -28.33436 -28.28935 -28.06513 -27.66572 -26.45289 -24.06618 -23.22669 -23.00009 -21.33715 -20.77981 -19.99776 -18.98895 -18.78513 -17.71959 -17.54520 -17.37279 -16.80625 -16.52635 -16.36710 -16.20268 -15.71595 -15.43868 -15.35672 -14.91611 -14.83368 -14.66867 -14.40896 -14.16477 -14.02853 -13.79880 -13.43344 -13.21693 -13.19156 -13.04281 -12.87220 -12.84432 -12.82247 -12.81301 -12.68119 -12.44587 -12.39983 -12.27297 -11.99844 -11.99303 -11.88461 -11.63947 -11.53425 -11.36690 -11.25654 -11.04028 -10.64673 -10.56185 -10.06536 -9.75689 -8.16735 -6.30071 1.11339 1.43005 1.43914 1.57116 1.73500 1.79093 2.27351 2.46021 2.77272 3.16532 3.51978 3.72638 3.77752 3.78901 3.83007 3.97289 3.98704 4.07811 4.19810 4.22895 4.40467 4.50754 4.55359 4.58102 4.61385 4.64073 4.68422 4.71361 4.76066 4.79067 4.84818 4.87218 4.90008 4.94183 5.02000 5.07677 5.09764 5.13136 5.16674 5.29269 5.30510 5.35881 5.46370 5.49585 5.51299 5.60178 5.67427 5.88521 6.20261 6.26575 6.64478 6.89220 7.25426 7.39401 7.42174 8.95944 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.002235 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.604721 B =12524.858669 C =13230.126575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.093 0.907 4 C 0.130 3.870 5 N -0.591 5.591 6 C 0.650 3.350 7 O -0.590 6.590 8 O -0.369 6.369 9 C 0.124 3.876 10 C -0.178 4.178 11 C -0.137 4.137 12 C -0.178 4.178 13 C 0.120 3.880 14 C -0.140 4.140 15 C 0.149 3.851 16 H 0.071 0.929 17 N -0.710 5.710 18 C 0.517 3.483 19 O -0.584 6.584 20 C -0.121 4.121 21 C 0.043 3.957 22 C -0.540 4.540 23 H 0.075 0.925 24 C -0.008 4.008 25 N -0.937 5.937 26 Si 0.971 3.029 27 H -0.253 1.253 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.410 0.590 49 H 0.102 0.898 50 H 0.102 0.898 51 H -0.018 1.018 52 H -0.017 1.017 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.329 15.515 24.081 30.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.111 0.889 4 C 0.009 3.991 5 N -0.331 5.331 6 C 0.406 3.594 7 O -0.481 6.481 8 O -0.283 6.283 9 C 0.088 3.912 10 C -0.235 4.235 11 C -0.194 4.194 12 C -0.235 4.235 13 C -0.002 4.002 14 C -0.180 4.180 15 C 0.044 3.956 16 H 0.089 0.911 17 N -0.365 5.365 18 C 0.306 3.694 19 O -0.464 6.464 20 C -0.161 4.161 21 C 0.005 3.995 22 C -0.578 4.578 23 H 0.093 0.907 24 C -0.205 4.205 25 N -0.577 5.577 26 Si 0.796 3.204 27 H -0.177 1.177 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.114 0.886 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.248 0.752 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.000 1.000 52 H 0.001 0.999 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.457 16.041 23.522 30.330 hybrid contribution -0.354 -0.901 -0.507 1.093 sum 10.102 15.140 23.015 29.342 Atomic orbital electron populations 1.21745 0.92546 1.02960 1.02840 1.21694 0.97455 1.00090 0.92520 0.88900 1.21786 0.76128 1.02028 0.99168 1.47044 1.06464 1.62401 1.17171 1.18106 0.81286 0.77320 0.82696 1.90874 1.74857 1.50379 1.31986 1.86321 1.16711 1.77922 1.47365 1.22405 0.91172 0.94154 0.83505 1.22458 1.03648 1.00262 0.97162 1.21884 0.90047 1.03479 1.03977 1.22454 1.03827 0.94040 1.03153 1.21659 0.98931 0.97152 0.82486 1.22231 0.95745 1.02085 0.97899 1.20925 0.93522 0.82203 0.98954 0.91091 1.45988 1.68437 1.13346 1.08697 1.21191 0.75814 0.89138 0.83306 1.90662 1.51573 1.71218 1.32897 1.21635 1.03249 0.90901 1.00283 1.18672 0.94761 0.94555 0.91464 1.21755 1.44372 0.98126 0.93546 0.90712 1.26116 0.95660 1.03524 0.95188 1.70182 1.50029 1.39026 0.98509 0.85307 0.77644 0.78532 0.78962 1.17664 1.20733 1.20698 0.91947 0.90499 0.92553 0.88255 0.89630 0.92223 0.89168 0.91741 0.91391 0.87979 0.91443 0.91748 0.89183 0.92192 0.90728 0.88647 0.91630 0.89767 0.75200 0.87979 0.87947 0.99975 0.99896 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.05 71.98 0.65 -1.43 16 2 C -0.10 -1.55 2.67 -10.71 -0.03 -1.58 16 3 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 4 C 0.13 2.06 5.42 86.36 0.47 2.53 16 5 N -0.59 -11.21 2.97 -949.23 -2.82 -14.04 16 6 C 0.65 14.46 7.74 129.79 1.00 15.47 16 7 O -0.59 -15.05 11.29 19.80 0.22 -14.83 16 8 O -0.37 -7.54 8.52 -55.49 -0.47 -8.02 16 9 C 0.12 1.97 1.13 -10.80 -0.01 1.96 16 10 C -0.18 -2.77 8.37 71.98 0.60 -2.17 16 11 C -0.14 -1.46 8.85 71.98 0.64 -0.82 16 12 C -0.18 -2.72 8.37 71.98 0.60 -2.12 16 13 C 0.12 2.26 6.19 86.36 0.53 2.80 16 14 C -0.14 -2.95 5.77 30.67 0.18 -2.77 16 15 C 0.15 3.24 2.21 45.02 0.10 3.34 16 16 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16 17 N -0.71 -16.99 3.60 -442.40 -1.59 -18.58 16 18 C 0.52 18.52 7.79 87.66 0.68 19.20 16 19 O -0.58 -27.05 15.64 -3.04 -0.05 -27.10 16 20 C -0.12 -4.63 5.64 29.85 0.17 -4.46 16 21 C 0.04 2.35 4.26 29.85 0.13 2.48 16 22 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 23 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 24 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 25 N -0.94 -59.15 13.29 21.45 0.28 -58.87 16 26 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 27 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 28 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 29 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 30 H 0.06 0.92 7.54 -2.39 -0.02 0.90 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 1.68 7.00 -2.39 -0.02 1.66 16 34 H 0.09 1.13 6.65 -2.39 -0.02 1.12 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.06 1.33 5.88 -2.39 -0.01 1.32 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.06 1.32 5.88 -2.39 -0.01 1.30 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 1.43 7.74 -2.39 -0.02 1.41 16 45 H 0.10 1.76 6.93 -2.39 -0.02 1.74 16 46 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.41 7.38 6.73 -92.71 -0.62 6.76 16 49 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 50 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 51 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 52 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 53 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -77.44 412.37 4.27 -73.17 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.26 Total: 19.83 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 6.41 Total: 2.32 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -4.13 Total: -91.48 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -0.30 Total: -49.94 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -77.44 4.27 -73.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496819355.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.833 kcal (2) G-P(sol) polarization free energy of solvation -77.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds