Wall clock time and date at job start Sat Apr 11 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 5 5 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 6 6 H 1.08999 * 117.49664 * 0.02562 * 5 2 1 7 7 C 1.52999 * 117.49968 * 215.00840 * 5 2 1 8 8 N 1.46494 * 109.47048 * 174.99938 * 7 5 2 9 9 C 1.34783 * 119.99885 * 179.97438 * 8 7 5 10 10 O 1.21279 * 120.00134 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.00020 * 179.97438 * 9 8 7 12 12 H 1.09004 * 109.46838 * 60.00084 * 11 9 8 13 13 C 1.53004 * 109.47457 * 300.00473 * 11 9 8 14 14 C 1.52999 * 109.47067 * 174.99698 * 13 11 9 15 15 C 1.50694 * 109.47127 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99900 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00240 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00119 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00030 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47451 * 59.99934 * 19 17 15 21 21 H 1.48499 * 109.47208 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47302 * 300.00097 * 19 17 15 23 23 N 1.46492 * 109.47234 * 179.97438 * 11 9 8 24 24 C 1.34777 * 120.00678 * 205.00035 * 23 11 9 25 25 O 1.21512 * 119.99660 * 0.02562 * 24 23 11 26 26 O 1.34634 * 120.00593 * 180.02562 * 24 23 11 27 27 C 1.45202 * 117.00374 * 180.02562 * 26 24 23 28 28 C 1.52999 * 109.47039 * 59.99750 * 27 26 24 29 29 C 1.52994 * 109.47210 * 180.02562 * 27 26 24 30 30 C 1.53002 * 109.46845 * 300.00345 * 27 26 24 31 31 H 1.09003 * 109.47442 * 154.41657 * 1 2 3 32 32 H 1.09000 * 109.47181 * 274.41811 * 1 2 3 33 33 H 1.09005 * 109.47217 * 34.42156 * 1 2 3 34 34 H 1.09008 * 117.49673 * 359.97438 * 4 2 1 35 35 H 1.08999 * 117.49942 * 144.97366 * 4 2 1 36 36 H 1.09002 * 109.46825 * 294.99320 * 7 5 2 37 37 H 1.08997 * 109.47412 * 54.99052 * 7 5 2 38 38 H 0.97004 * 120.00338 * 359.97438 * 8 7 5 39 39 H 1.09001 * 109.46496 * 294.99782 * 13 11 9 40 40 H 1.09001 * 109.46772 * 54.99861 * 13 11 9 41 41 H 1.08999 * 109.47564 * 300.00229 * 14 13 11 42 42 H 1.09009 * 109.46772 * 59.99682 * 14 13 11 43 43 H 0.96998 * 120.00050 * 179.97438 * 18 17 15 44 44 H 0.97000 * 120.00140 * 25.00468 * 23 11 9 45 45 H 1.08997 * 109.47124 * 60.00040 * 28 27 26 46 46 H 1.09000 * 109.47026 * 180.02562 * 28 27 26 47 47 H 1.09004 * 109.47558 * 300.00298 * 28 27 26 48 48 H 1.08995 * 109.47612 * 59.99791 * 29 27 26 49 49 H 1.09004 * 109.47206 * 179.97438 * 29 27 26 50 50 H 1.08999 * 109.47189 * 299.99470 * 29 27 26 51 51 H 1.08992 * 109.47407 * 59.99537 * 30 27 26 52 52 H 1.08995 * 109.47117 * 179.97438 * 30 27 26 53 53 H 1.09008 * 109.46759 * 299.99606 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8583 1.2685 7 6 3.5486 -0.7753 1.4723 8 7 4.0081 -1.9337 2.2423 9 6 5.1521 -1.8609 2.9513 10 8 5.8013 -0.8366 2.9513 11 6 5.6245 -3.0524 3.7439 12 1 5.7843 -3.8956 3.0718 13 6 4.5671 -3.4239 4.7855 14 6 4.9888 -4.7064 5.5054 15 6 3.9477 -5.0718 6.5318 16 1 3.0725 -4.4516 6.6577 17 6 4.1124 -6.1980 7.3100 18 7 5.1783 -6.9529 7.1571 19 14 2.8215 -6.6514 8.5818 20 1 1.5168 -6.8694 7.9069 21 1 3.2308 -7.8961 9.2806 22 1 2.6902 -5.5494 9.5685 23 7 6.8815 -2.7221 4.4197 24 6 7.7435 -3.7020 4.7562 25 8 7.4781 -4.8595 4.4987 26 8 8.8986 -3.3985 5.3778 27 6 9.7790 -4.5044 5.7098 28 6 10.1818 -5.2379 4.4289 29 6 11.0312 -3.9680 6.4063 30 6 9.0512 -5.4727 6.6445 31 1 -0.3634 -0.9269 -0.4438 32 1 -0.3633 0.0792 1.0246 33 1 -0.3634 0.8478 -0.5809 34 1 1.6112 -1.8584 -1.2685 35 1 3.1711 -0.8746 -1.2692 36 1 4.3020 -0.5102 0.7305 37 1 3.3883 0.0676 2.1445 38 1 3.4890 -2.7532 2.2421 39 1 4.4712 -2.6152 5.5101 40 1 3.6094 -3.5834 4.2901 41 1 5.0848 -5.5150 4.7809 42 1 5.9466 -4.5468 6.0008 43 1 5.2944 -7.7450 7.7049 44 1 7.0936 -1.7981 4.6250 45 1 10.7002 -4.5481 3.7629 46 1 10.8423 -6.0683 4.6782 47 1 9.2895 -5.6201 3.9331 48 1 10.7439 -3.4458 7.3188 49 1 11.6919 -4.7983 6.6559 50 1 11.5498 -3.2781 5.7407 51 1 8.1589 -5.8547 6.1488 52 1 9.7119 -6.3031 6.8934 53 1 8.7643 -4.9501 7.5571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496961654.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:59 Heat of formation + Delta-G solvation = -132.668587 kcal Electronic energy + Delta-G solvation = -31000.192591 eV Core-core repulsion = 26871.477391 eV Total energy + Delta-G solvation = -4128.715200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.95200 -40.96648 -39.06559 -38.36845 -36.35249 -35.60521 -35.23729 -34.71930 -32.67983 -30.41313 -29.15594 -28.28595 -28.22470 -27.16987 -25.74803 -23.45126 -22.44842 -22.14841 -21.63398 -21.19718 -20.78718 -19.45126 -18.47726 -18.11084 -17.50487 -17.20803 -17.09394 -16.58862 -16.29426 -16.25780 -15.67666 -15.38876 -15.25159 -15.05508 -14.82776 -14.48481 -14.36409 -14.14943 -13.92742 -13.87835 -13.53965 -13.28608 -13.13154 -13.05534 -12.91118 -12.83162 -12.77213 -12.74707 -12.54130 -12.38444 -12.32873 -12.22857 -12.21262 -11.75791 -11.68377 -11.39066 -11.19562 -11.03691 -10.99506 -10.84280 -10.67259 -10.44632 -10.14551 -10.02488 -8.07666 -6.20136 1.10936 1.39483 1.41984 1.42595 1.50034 1.90270 2.13941 2.44602 2.83926 3.21916 3.23004 3.57303 3.64888 3.84607 3.86935 3.91655 4.01624 4.03854 4.07650 4.11927 4.26913 4.47616 4.53336 4.60164 4.63886 4.66950 4.74115 4.78199 4.81548 4.87048 4.89718 4.93367 4.95605 4.97372 4.99270 5.13901 5.19031 5.23768 5.24261 5.27063 5.38337 5.39953 5.47556 5.55033 5.59353 5.65948 5.87260 6.02443 6.31871 6.36974 6.47068 6.98778 7.03375 7.46833 7.49601 9.00951 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.003429 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.803860 B = 8163.633660 C =11178.190284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.141 4.141 3 H 0.108 0.892 4 C -0.168 4.168 5 C -0.173 4.173 6 H 0.117 0.883 7 C 0.154 3.846 8 N -0.708 5.708 9 C 0.525 3.475 10 O -0.566 6.566 11 C 0.154 3.846 12 H 0.109 0.891 13 C -0.108 4.108 14 C 0.046 3.954 15 C -0.548 4.548 16 H 0.058 0.942 17 C 0.005 3.995 18 N -0.917 5.917 19 Si 0.955 3.045 20 H -0.266 1.266 21 H -0.287 1.287 22 H -0.272 1.272 23 N -0.691 5.691 24 C 0.647 3.353 25 O -0.566 6.566 26 O -0.372 6.372 27 C 0.128 3.872 28 C -0.174 4.174 29 C -0.131 4.131 30 C -0.175 4.175 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.416 0.584 39 H 0.054 0.946 40 H 0.086 0.914 41 H -0.010 1.010 42 H -0.002 1.002 43 H 0.258 0.742 44 H 0.413 0.587 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.103 0.897 50 H 0.078 0.922 51 H 0.058 0.942 52 H 0.084 0.916 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.636 11.390 -12.728 17.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 H 0.127 0.873 4 C -0.205 4.205 5 C -0.191 4.191 6 H 0.135 0.865 7 C 0.031 3.969 8 N -0.360 5.360 9 C 0.311 3.689 10 O -0.445 6.445 11 C 0.046 3.954 12 H 0.127 0.873 13 C -0.147 4.147 14 C 0.009 3.991 15 C -0.586 4.586 16 H 0.076 0.924 17 C -0.193 4.193 18 N -0.556 5.556 19 Si 0.780 3.220 20 H -0.190 1.190 21 H -0.213 1.213 22 H -0.197 1.197 23 N -0.352 5.352 24 C 0.400 3.600 25 O -0.454 6.454 26 O -0.287 6.287 27 C 0.092 3.908 28 C -0.232 4.232 29 C -0.188 4.188 30 C -0.232 4.232 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.253 0.747 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.009 0.991 42 H 0.017 0.983 43 H 0.066 0.934 44 H 0.250 0.750 45 H 0.089 0.911 46 H 0.109 0.891 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.121 0.879 50 H 0.097 0.903 51 H 0.077 0.923 52 H 0.103 0.897 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.111 11.359 -12.786 17.139 hybrid contribution -0.714 -0.697 1.036 1.439 sum 0.396 10.662 -11.750 15.871 Atomic orbital electron populations 1.21397 0.91879 1.02616 1.02223 1.22466 0.95983 0.94528 1.03031 0.87345 1.23337 1.02955 1.01477 0.92761 1.22521 0.97688 1.04051 0.94882 0.86465 1.20931 0.94269 0.87553 0.94124 1.45819 1.23695 1.17989 1.48473 1.20344 0.81180 0.88342 0.79046 1.90658 1.56673 1.32372 1.64808 1.20792 0.83986 0.95917 0.94660 0.87329 1.21965 0.96855 0.99148 0.96708 1.18859 0.95106 0.91338 0.93804 1.21693 1.07190 1.09483 1.20215 0.92415 1.25870 0.97515 0.96548 0.99406 1.70175 1.28891 1.15728 1.40844 0.85676 0.79714 0.77378 0.79256 1.19042 1.21252 1.19699 1.44173 1.18657 1.09538 1.62869 1.18038 0.80091 0.84370 0.77515 1.91014 1.76973 1.18898 1.58501 1.86244 1.29101 1.41340 1.72062 1.22381 0.88542 0.84228 0.95651 1.22422 1.02690 1.01362 0.96681 1.21856 0.93374 1.03048 1.00488 1.22393 1.02177 0.99738 0.98907 0.92132 0.92169 0.91203 0.87746 0.88480 0.91547 0.91565 0.74696 0.92732 0.89590 0.99120 0.98328 0.93366 0.75008 0.91139 0.89143 0.92443 0.91770 0.87858 0.90350 0.92346 0.89718 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 10.19 71.98 0.73 -0.65 16 2 C -0.14 -1.82 6.12 -10.79 -0.07 -1.89 16 3 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.17 -2.17 9.83 30.62 0.30 -1.87 16 5 C -0.17 -2.58 5.57 -10.77 -0.06 -2.64 16 6 H 0.12 1.69 8.04 -2.39 -0.02 1.67 16 7 C 0.15 3.00 5.96 86.38 0.51 3.51 16 8 N -0.71 -16.15 5.42 -463.07 -2.51 -18.66 16 9 C 0.53 15.81 7.22 87.66 0.63 16.44 16 10 O -0.57 -19.58 15.84 -3.03 -0.05 -19.63 16 11 C 0.15 5.38 2.66 44.25 0.12 5.49 16 12 H 0.11 3.91 7.58 -2.39 -0.02 3.90 16 13 C -0.11 -4.29 4.77 30.60 0.15 -4.14 16 14 C 0.05 2.45 3.57 29.85 0.11 2.55 16 15 C -0.55 -31.29 9.11 25.60 0.23 -31.05 16 16 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 17 C 0.01 0.31 5.46 84.65 0.46 0.77 16 18 N -0.92 -56.78 13.29 21.45 0.28 -56.50 16 19 Si 0.95 44.84 29.54 68.60 2.03 46.87 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 23 N -0.69 -25.74 4.91 -573.73 -2.82 -28.56 16 24 C 0.65 26.84 6.62 129.79 0.86 27.70 16 25 O -0.57 -26.84 9.02 19.80 0.18 -26.66 16 26 O -0.37 -13.91 9.94 -55.43 -0.55 -14.46 16 27 C 0.13 4.14 1.13 -10.80 -0.01 4.13 16 28 C -0.17 -5.17 8.37 71.98 0.60 -4.56 16 29 C -0.13 -2.98 8.85 71.98 0.64 -2.34 16 30 C -0.17 -6.71 8.37 71.98 0.60 -6.11 16 31 H 0.06 0.64 7.90 -2.39 -0.02 0.62 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.10 1.19 8.05 -2.38 -0.02 1.17 16 35 H 0.10 1.24 8.04 -2.39 -0.02 1.22 16 36 H 0.07 1.34 7.88 -2.39 -0.02 1.32 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.42 8.10 7.76 -92.71 -0.72 7.38 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.18 16 40 H 0.09 2.97 7.43 -2.39 -0.02 2.95 16 41 H -0.01 -0.57 7.84 -2.39 -0.02 -0.59 16 42 H 0.00 -0.10 5.65 -2.38 -0.01 -0.11 16 43 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.41 14.28 7.90 -92.71 -0.73 13.55 16 45 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 46 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.06 2.11 5.88 -2.39 -0.01 2.10 16 48 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 50 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.06 2.87 5.88 -2.39 -0.01 2.86 16 52 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 53 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -74.57 422.65 1.83 -72.74 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: -0.55 Total: 39.50 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 5.81 Total: 5.35 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -5.04 Total: -103.72 kcal Atomic # 8 Polarization: -60.33 SS G_CDS: -0.42 Total: -60.75 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -74.57 1.83 -72.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496961654.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.927 kcal (2) G-P(sol) polarization free energy of solvation -74.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds