Wall clock time and date at job start Sat Apr 11 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 113.27800 * 2 1 4 4 C 1.53753 * 114.39011 * 226.65224 * 2 1 3 5 5 N 1.47071 * 87.88995 * 272.67562 * 4 2 1 6 6 C 1.34770 * 136.05967 * 152.95976 * 5 4 2 7 7 O 1.21284 * 120.00339 * 179.63194 * 6 5 4 8 8 C 1.50705 * 120.00159 * 359.63896 * 6 5 4 9 9 H 1.09004 * 109.46515 * 299.99531 * 8 6 5 10 10 C 1.53002 * 109.47195 * 59.99271 * 8 6 5 11 11 C 1.52998 * 109.47190 * 185.00147 * 10 8 6 12 12 C 1.50691 * 109.47216 * 179.97438 * 11 10 8 13 13 H 1.08004 * 120.00236 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00237 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99974 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 120.00334 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46806 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47282 * 120.00185 * 16 14 12 19 19 H 1.48506 * 109.46932 * 240.00285 * 16 14 12 20 20 N 1.46494 * 109.47226 * 179.97438 * 8 6 5 21 21 C 1.34780 * 120.00166 * 154.99775 * 20 8 6 22 22 O 1.21513 * 119.99577 * 359.97438 * 21 20 8 23 23 O 1.34628 * 120.00286 * 179.97438 * 21 20 8 24 24 C 1.45202 * 117.00407 * 179.97438 * 23 21 20 25 25 C 1.53006 * 109.46867 * 59.99955 * 24 23 21 26 26 C 1.52999 * 109.47019 * 300.00782 * 24 23 21 27 27 C 1.52997 * 109.47464 * 180.02562 * 24 23 21 28 28 C 1.47067 * 87.88294 * 332.71180 * 5 4 2 29 29 H 1.08993 * 113.47130 * 142.12323 * 28 5 4 30 30 C 1.53006 * 113.46650 * 272.56111 * 28 5 4 31 31 H 1.09001 * 109.46672 * 286.93252 * 1 2 3 32 32 H 1.08996 * 109.47000 * 46.93057 * 1 2 3 33 33 H 1.08991 * 109.47166 * 166.93482 * 1 2 3 34 34 H 1.09002 * 113.46479 * 157.94495 * 4 2 1 35 35 H 1.09000 * 113.55187 * 27.42436 * 4 2 1 36 36 H 1.09001 * 109.46941 * 305.00671 * 10 8 6 37 37 H 1.09005 * 109.46549 * 65.00180 * 10 8 6 38 38 H 1.09004 * 109.47184 * 300.00422 * 11 10 8 39 39 H 1.09005 * 109.46972 * 60.00133 * 11 10 8 40 40 H 0.96997 * 120.00080 * 180.02562 * 15 14 12 41 41 H 0.97000 * 120.00376 * 334.99991 * 20 8 6 42 42 H 1.09001 * 109.46801 * 300.00397 * 25 24 23 43 43 H 1.09001 * 109.46998 * 59.99993 * 25 24 23 44 44 H 1.09000 * 109.47050 * 180.02562 * 25 24 23 45 45 H 1.09000 * 109.47160 * 179.97438 * 26 24 23 46 46 H 1.09002 * 109.46719 * 299.99410 * 26 24 23 47 47 H 1.08993 * 109.47839 * 59.99251 * 26 24 23 48 48 H 1.09001 * 109.47375 * 300.00043 * 27 24 23 49 49 H 1.09002 * 109.46777 * 60.00599 * 27 24 23 50 50 H 1.09000 * 109.47140 * 180.02562 * 27 24 23 51 51 H 1.09001 * 109.47083 * 40.49097 * 30 28 5 52 52 H 1.08995 * 109.47702 * 160.49460 * 30 28 5 53 53 H 1.08999 * 109.46859 * 280.49692 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9608 1.0012 0.0000 4 6 2.1650 -0.9612 -1.0183 5 7 2.0801 -2.0144 0.0047 6 6 1.9798 -3.3584 0.0079 7 8 1.9352 -3.9607 1.0596 8 6 1.9232 -4.1129 -1.2955 9 1 1.0549 -3.7853 -1.8674 10 6 3.1961 -3.8390 -2.0990 11 6 3.0847 -4.5032 -3.4729 12 6 4.3381 -4.2329 -4.2645 13 1 5.1348 -3.6465 -3.8310 14 6 4.4684 -4.7352 -5.5419 15 7 3.4986 -5.4497 -6.0697 16 14 6.0225 -4.4008 -6.5231 17 1 6.9538 -3.5781 -5.7100 18 1 6.6745 -5.6886 -6.8717 19 1 5.6743 -3.6693 -7.7677 20 7 1.8167 -5.5486 -1.0244 21 6 1.2607 -6.3677 -1.9390 22 8 0.8474 -5.9152 -2.9883 23 8 1.1633 -7.6872 -1.6901 24 6 0.5529 -8.5090 -2.7199 25 6 1.3640 -8.3932 -4.0121 26 6 -0.8786 -8.0313 -2.9718 27 6 0.5298 -9.9683 -2.2607 28 6 2.1593 -0.9560 1.0228 29 1 1.5267 -1.1406 1.8909 30 6 3.5935 -0.5829 1.4034 31 1 -0.3633 0.2993 0.9831 32 1 -0.3633 0.7018 -0.7507 33 1 -0.3633 -1.0010 -0.2323 34 1 3.1882 -0.6968 -1.2852 35 1 1.5371 -1.1502 -1.8890 36 1 3.3223 -2.7636 -2.2244 37 1 4.0560 -4.2463 -1.5672 38 1 2.9584 -5.5786 -3.3474 39 1 2.2247 -4.0960 -4.0046 40 1 3.5904 -5.8034 -6.9682 41 1 2.1462 -5.9098 -0.1866 42 1 1.3800 -7.3535 -4.3390 43 1 2.3838 -8.7334 -3.8327 44 1 0.9055 -9.0098 -4.7853 45 1 -1.3366 -8.6479 -3.7451 46 1 -1.4563 -8.1138 -2.0512 47 1 -0.8625 -6.9916 -3.2986 48 1 1.5495 -10.3089 -2.0810 49 1 -0.0483 -10.0504 -1.3403 50 1 0.0720 -10.5853 -3.0340 51 1 4.2137 -0.5624 0.5073 52 1 3.6007 0.4008 1.8728 53 1 3.9880 -1.3214 2.1014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497131711.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:14 Heat of formation + Delta-G solvation = -112.718693 kcal Electronic energy + Delta-G solvation = -32185.950675 eV Core-core repulsion = 28058.100567 eV Total energy + Delta-G solvation = -4127.850108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.15380 -41.59093 -39.71675 -38.31125 -36.39384 -35.37189 -34.75110 -33.08151 -32.11741 -31.17471 -29.22069 -28.31092 -28.24824 -27.64759 -25.94736 -24.66065 -23.37072 -22.44154 -21.45820 -21.14245 -19.67735 -18.94482 -18.45901 -18.03826 -17.59735 -17.15724 -17.07805 -16.89970 -16.45163 -16.11306 -15.54895 -15.40734 -15.16706 -14.88027 -14.65851 -14.43561 -14.35843 -14.08136 -13.88721 -13.66690 -13.31215 -13.20851 -13.16657 -13.14411 -12.95912 -12.86472 -12.82489 -12.78941 -12.62161 -12.53456 -12.43912 -12.36935 -12.24650 -12.07809 -11.75140 -11.62587 -11.38929 -11.22230 -11.14369 -10.91475 -10.76659 -10.47760 -10.12356 -9.78290 -8.09762 -6.22580 1.01924 1.36584 1.38912 1.39695 1.51634 1.76839 1.97751 2.42801 3.15647 3.17831 3.20741 3.34701 3.80194 3.82116 3.84384 3.98148 3.99115 4.04305 4.13485 4.22863 4.32741 4.49657 4.53819 4.59414 4.60415 4.64516 4.73056 4.76061 4.79048 4.83015 4.86035 4.88854 4.93115 4.95593 4.98317 5.07156 5.11551 5.16934 5.18506 5.24723 5.31936 5.35768 5.47734 5.52001 5.56524 5.62010 5.82415 5.98519 6.29052 6.41430 6.57075 6.92179 6.95601 7.43841 7.45474 8.99424 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007503 B = 0.004628 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3731.016844 B = 6048.929894 C = 8855.873063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.102 4.102 3 H 0.135 0.865 4 C 0.088 3.912 5 N -0.638 5.638 6 C 0.547 3.453 7 O -0.572 6.572 8 C 0.162 3.838 9 H 0.100 0.900 10 C -0.104 4.104 11 C 0.049 3.951 12 C -0.545 4.545 13 H 0.057 0.943 14 C 0.005 3.995 15 N -0.917 5.917 16 Si 0.956 3.044 17 H -0.261 1.261 18 H -0.284 1.284 19 H -0.278 1.278 20 N -0.693 5.693 21 C 0.648 3.352 22 O -0.565 6.565 23 O -0.372 6.372 24 C 0.128 3.872 25 C -0.175 4.175 26 C -0.174 4.174 27 C -0.131 4.131 28 C 0.126 3.874 29 H 0.080 0.920 30 C -0.151 4.151 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.049 0.951 38 H -0.002 1.002 39 H -0.011 1.011 40 H 0.258 0.742 41 H 0.412 0.588 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.069 0.931 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.077 0.923 50 H 0.104 0.896 51 H 0.064 0.936 52 H 0.104 0.896 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 6.553 12.816 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 H 0.153 0.847 4 C -0.034 4.034 5 N -0.372 5.372 6 C 0.336 3.664 7 O -0.452 6.452 8 C 0.054 3.946 9 H 0.118 0.882 10 C -0.143 4.143 11 C 0.012 3.988 12 C -0.583 4.583 13 H 0.075 0.925 14 C -0.193 4.193 15 N -0.557 5.557 16 Si 0.781 3.219 17 H -0.185 1.185 18 H -0.210 1.210 19 H -0.204 1.204 20 N -0.354 5.354 21 C 0.401 3.599 22 O -0.453 6.453 23 O -0.287 6.287 24 C 0.092 3.908 25 C -0.232 4.232 26 C -0.232 4.232 27 C -0.187 4.187 28 C 0.024 3.976 29 H 0.098 0.902 30 C -0.209 4.209 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.016 0.984 39 H 0.007 0.993 40 H 0.067 0.933 41 H 0.249 0.751 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.096 0.904 50 H 0.123 0.877 51 H 0.083 0.917 52 H 0.122 0.878 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.827 6.059 12.663 15.610 hybrid contribution 0.995 -0.517 -0.683 1.313 sum -5.832 5.542 11.980 14.431 Atomic orbital electron populations 1.21553 0.92786 1.01442 1.03270 1.22916 0.96610 0.98969 0.93561 0.84681 1.23577 1.02673 0.83741 0.93424 1.49761 1.70700 1.02861 1.13908 1.19946 0.75459 0.81238 0.89736 1.90639 1.52905 1.67748 1.33941 1.20651 1.01597 0.78961 0.93371 0.88183 1.21932 0.93950 1.01741 0.96654 1.18832 0.94649 0.94988 0.90306 1.21697 1.03346 1.33191 1.00068 0.92485 1.25883 0.99430 0.95018 0.98994 1.70193 1.33875 1.35940 1.15671 0.85544 0.79772 0.77903 0.78664 1.18530 1.20964 1.20387 1.44197 1.64312 1.06092 1.20774 1.18007 0.77899 0.81238 0.82759 1.91010 1.52738 1.76626 1.24947 1.86245 1.76734 1.17139 1.48587 1.22402 0.92498 0.90632 0.85296 1.22392 0.99314 1.03998 0.97492 1.22422 0.94344 1.03226 1.03159 1.21861 1.03638 0.89741 1.03509 1.22877 0.98211 0.83104 0.93411 0.90185 1.21979 0.93624 1.03079 1.02238 0.90840 0.90314 0.94833 0.87726 0.90359 0.89912 0.93206 0.98390 0.99294 0.93320 0.75113 0.92434 0.93882 0.89583 0.89007 0.91164 0.92553 0.91754 0.90356 0.87748 0.91669 0.87751 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.73 71.98 0.70 -1.22 16 2 C -0.10 -1.41 4.37 -10.37 -0.05 -1.46 16 3 H 0.14 1.03 8.11 -2.39 -0.02 1.01 16 4 C 0.09 1.77 5.86 83.26 0.49 2.26 16 5 N -0.64 -16.72 3.24 -833.02 -2.70 -19.42 16 6 C 0.55 18.66 7.47 87.66 0.65 19.32 16 7 O -0.57 -22.11 16.61 -3.04 -0.05 -22.16 16 8 C 0.16 6.17 2.55 44.25 0.11 6.28 16 9 H 0.10 4.01 7.58 -2.38 -0.02 3.99 16 10 C -0.10 -4.39 4.76 30.59 0.15 -4.25 16 11 C 0.05 2.69 3.57 29.84 0.11 2.80 16 12 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 13 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 14 C 0.01 0.32 5.46 84.65 0.46 0.78 16 15 N -0.92 -57.11 13.29 21.45 0.28 -56.82 16 16 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 17 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 N -0.69 -27.49 4.91 -573.73 -2.82 -30.31 16 21 C 0.65 27.94 6.62 129.79 0.86 28.80 16 22 O -0.57 -27.63 9.02 19.80 0.18 -27.46 16 23 O -0.37 -14.34 9.94 -55.38 -0.55 -14.89 16 24 C 0.13 4.23 1.13 -10.79 -0.01 4.22 16 25 C -0.17 -6.82 8.37 71.98 0.60 -6.22 16 26 C -0.17 -5.30 8.37 71.98 0.60 -4.69 16 27 C -0.13 -3.05 8.85 71.98 0.64 -2.41 16 28 C 0.13 2.38 4.53 41.79 0.19 2.57 16 29 H 0.08 1.61 8.12 -2.39 -0.02 1.59 16 30 C -0.15 -2.36 9.79 71.98 0.70 -1.65 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.03 0.66 7.93 -2.39 -0.02 0.64 16 34 H 0.10 1.89 7.19 -2.39 -0.02 1.88 16 35 H 0.08 1.73 8.12 -2.39 -0.02 1.71 16 36 H 0.08 3.13 6.17 -2.39 -0.01 3.11 16 37 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.00 -0.13 5.64 -2.39 -0.01 -0.15 16 39 H -0.01 -0.69 7.85 -2.38 -0.02 -0.71 16 40 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.41 15.30 7.90 -92.71 -0.73 14.57 16 42 H 0.06 2.88 5.88 -2.39 -0.01 2.86 16 43 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.06 2.12 5.88 -2.39 -0.01 2.11 16 48 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 49 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 51 H 0.06 1.05 7.02 -2.39 -0.02 1.03 16 52 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -78.13 415.54 2.97 -75.16 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: 0.16 Total: 35.03 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 6.44 Total: 13.87 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -5.23 Total: -106.55 kcal Atomic # 8 Polarization: -64.08 SS G_CDS: -0.42 Total: -64.51 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -78.13 2.97 -75.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497131711.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.564 kcal (2) G-P(sol) polarization free energy of solvation -78.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds