Wall clock time and date at job start Sat Apr 11 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 112.95065 * 2 1 4 4 C 1.53949 * 113.83669 * 228.31554 * 2 1 3 5 5 N 1.47582 * 86.11480 * 222.03656 * 4 2 1 6 6 C 1.34777 * 134.48793 * 204.63951 * 5 4 2 7 7 O 1.21282 * 119.99754 * 179.97438 * 6 5 4 8 8 C 1.50693 * 120.00335 * 0.02562 * 6 5 4 9 9 H 1.09000 * 109.47568 * 59.99822 * 8 6 5 10 10 C 1.53006 * 109.47052 * 299.99845 * 8 6 5 11 11 C 1.53004 * 109.47025 * 175.00264 * 10 8 6 12 12 C 1.50703 * 109.46761 * 179.97438 * 11 10 8 13 13 H 1.07994 * 120.00174 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99740 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00219 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99817 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47330 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47182 * 120.00132 * 16 14 12 19 19 H 1.48504 * 109.46979 * 239.99977 * 16 14 12 20 20 N 1.46503 * 109.47160 * 179.97438 * 8 6 5 21 21 C 1.34776 * 120.00211 * 274.99494 * 20 8 6 22 22 O 1.21508 * 119.99482 * 0.02562 * 21 20 8 23 23 O 1.34635 * 120.00124 * 180.02562 * 21 20 8 24 24 C 1.45197 * 116.99910 * 180.02562 * 23 21 20 25 25 C 1.53001 * 109.47225 * 59.99706 * 24 23 21 26 26 C 1.52995 * 109.47150 * 179.97438 * 24 23 21 27 27 C 1.53000 * 109.47198 * 299.99687 * 24 23 21 28 28 C 1.47575 * 91.01812 * 24.63994 * 5 4 2 29 29 H 1.09002 * 113.77024 * 221.06022 * 28 5 4 30 30 C 1.53005 * 113.87132 * 89.67390 * 28 5 4 31 31 H 1.09001 * 109.47085 * 288.40548 * 1 2 3 32 32 H 1.09000 * 109.47383 * 48.40264 * 1 2 3 33 33 H 1.09004 * 109.47480 * 168.41057 * 1 2 3 34 34 H 1.09000 * 113.76787 * 336.33400 * 4 2 1 35 35 H 1.08998 * 113.77111 * 107.62567 * 4 2 1 36 36 H 1.09005 * 109.46919 * 294.99628 * 10 8 6 37 37 H 1.08992 * 109.47044 * 54.99807 * 10 8 6 38 38 H 1.08995 * 109.46856 * 299.99578 * 11 10 8 39 39 H 1.08998 * 109.47401 * 60.00285 * 11 10 8 40 40 H 0.96991 * 120.00268 * 180.02562 * 15 14 12 41 41 H 0.97001 * 120.00129 * 95.00163 * 20 8 6 42 42 H 1.08997 * 109.46939 * 60.00283 * 25 24 23 43 43 H 1.09004 * 109.47369 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.47215 * 300.00172 * 25 24 23 45 45 H 1.09001 * 109.47577 * 60.00115 * 26 24 23 46 46 H 1.09010 * 109.47264 * 179.97438 * 26 24 23 47 47 H 1.09000 * 109.47379 * 299.99365 * 26 24 23 48 48 H 1.09001 * 109.46882 * 60.00048 * 27 24 23 49 49 H 1.08997 * 109.47503 * 180.02562 * 27 24 23 50 50 H 1.09001 * 109.47453 * 300.00519 * 27 24 23 51 51 H 1.09003 * 109.46899 * 321.44645 * 30 28 5 52 52 H 1.08992 * 109.47112 * 81.44602 * 30 28 5 53 53 H 1.08993 * 109.47095 * 201.44684 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9549 1.0037 0.0000 4 6 2.1521 -0.9365 -1.0517 5 7 3.1120 -1.3181 0.0024 6 6 4.3644 -1.8160 0.0040 7 8 4.9269 -2.0391 1.0550 8 6 5.0663 -2.0944 -1.3001 9 1 5.1511 -1.1702 -1.8717 10 6 4.2623 -3.1188 -2.1034 11 6 4.9069 -3.3086 -3.4780 12 6 4.1154 -4.3181 -4.2689 13 1 3.2404 -4.7785 -3.8345 14 6 4.5082 -4.6537 -5.5472 15 7 5.5740 -4.0934 -6.0761 16 14 3.5267 -5.9045 -6.5278 17 1 2.3809 -6.3831 -5.7134 18 1 3.0192 -5.2707 -7.7711 19 1 4.3995 -7.0536 -6.8787 20 7 6.4046 -2.6259 -1.0307 21 6 7.4320 -1.7829 -0.8066 22 8 7.2481 -0.5820 -0.8277 23 8 8.6621 -2.2714 -0.5595 24 6 9.7205 -1.3051 -0.3267 25 6 9.3678 -0.4452 0.8886 26 6 11.0354 -2.0422 -0.0650 27 6 9.8735 -0.4097 -1.5579 28 6 2.1498 -0.9355 1.0539 29 1 2.6034 -0.4107 1.8947 30 6 1.2239 -2.0731 1.4895 31 1 -0.3633 0.3245 0.9751 32 1 -0.3634 0.6822 -0.7685 33 1 -0.3634 -1.0067 -0.2065 34 1 1.4939 -1.7483 -1.3612 35 1 2.6059 -0.4126 -1.8929 36 1 4.2528 -4.0706 -1.5721 37 1 3.2400 -2.7618 -2.2276 38 1 4.9164 -2.3569 -4.0093 39 1 5.9292 -3.6657 -3.3538 40 1 5.8502 -4.3292 -6.9754 41 1 6.5514 -3.5846 -1.0136 42 1 9.2589 -1.0831 1.7657 43 1 10.1622 0.2805 1.0632 44 1 8.4309 0.0799 0.7026 45 1 11.2870 -2.6551 -0.9305 46 1 11.8302 -1.3167 0.1094 47 1 10.9262 -2.6797 0.8123 48 1 8.9366 0.1154 -1.7439 49 1 10.6684 0.3154 -1.3833 50 1 10.1247 -1.0223 -2.4237 51 1 0.9391 -2.6635 0.6186 52 1 1.7428 -2.7096 2.2061 53 1 0.3302 -1.6565 1.9540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497131713.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:20 Heat of formation + Delta-G solvation = -122.604259 kcal Electronic energy + Delta-G solvation = -31674.128319 eV Core-core repulsion = 27545.849540 eV Total energy + Delta-G solvation = -4128.278778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.10223 -41.49723 -39.62925 -38.17863 -36.84287 -35.35603 -34.82505 -33.25371 -32.40659 -30.65790 -29.42058 -28.38331 -28.31024 -27.39386 -25.73633 -25.10919 -23.54834 -22.51329 -21.19703 -21.05086 -19.39121 -19.29181 -18.59905 -18.04877 -17.91574 -17.29517 -16.94758 -16.64627 -16.48001 -16.19451 -15.68559 -15.56045 -15.34075 -14.97883 -14.79503 -14.47311 -14.24736 -14.05539 -13.74856 -13.57972 -13.44796 -13.36061 -13.17835 -12.94542 -12.92771 -12.88284 -12.87365 -12.77666 -12.64073 -12.58605 -12.47841 -12.35473 -12.30425 -11.97013 -11.85974 -11.65874 -11.41724 -11.30122 -11.20427 -11.15138 -11.08152 -10.54508 -10.10042 -9.73457 -8.17199 -6.28245 1.04807 1.42856 1.44104 1.48757 1.56341 1.60962 1.95061 2.43244 3.10380 3.17584 3.26153 3.42919 3.73911 3.78446 3.81209 3.93154 3.97701 3.99851 4.03860 4.21779 4.32991 4.45737 4.51029 4.54128 4.59035 4.59172 4.69724 4.73836 4.73871 4.78304 4.81218 4.85504 4.92016 4.96929 4.98961 5.03014 5.07629 5.11546 5.18267 5.25308 5.27201 5.31384 5.34378 5.50778 5.51990 5.56737 5.65753 5.83947 6.21420 6.31333 6.61465 6.88414 7.02372 7.28487 7.41521 8.94508 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.005839 B = 0.004899 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4793.830578 B = 5713.717719 C = 9778.192212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 H 0.102 0.898 4 C 0.093 3.907 5 N -0.642 5.642 6 C 0.527 3.473 7 O -0.579 6.579 8 C 0.161 3.839 9 H 0.099 0.901 10 C -0.094 4.094 11 C 0.034 3.966 12 C -0.536 4.536 13 H 0.067 0.933 14 C 0.003 3.997 15 N -0.932 5.932 16 Si 0.961 3.039 17 H -0.258 1.258 18 H -0.280 1.280 19 H -0.284 1.284 20 N -0.683 5.683 21 C 0.656 3.344 22 O -0.592 6.592 23 O -0.371 6.371 24 C 0.120 3.880 25 C -0.175 4.175 26 C -0.133 4.133 27 C -0.179 4.179 28 C 0.125 3.875 29 H 0.075 0.925 30 C -0.147 4.147 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.094 0.906 38 H -0.007 1.007 39 H -0.003 1.003 40 H 0.262 0.738 41 H 0.413 0.587 42 H 0.057 0.943 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.066 0.934 46 H 0.109 0.891 47 H 0.069 0.931 48 H 0.057 0.943 49 H 0.099 0.901 50 H 0.056 0.944 51 H 0.066 0.934 52 H 0.043 0.957 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.729 8.120 13.588 16.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 H 0.120 0.880 4 C -0.029 4.029 5 N -0.377 5.377 6 C 0.315 3.685 7 O -0.459 6.459 8 C 0.053 3.947 9 H 0.117 0.883 10 C -0.132 4.132 11 C -0.004 4.004 12 C -0.574 4.574 13 H 0.085 0.915 14 C -0.195 4.195 15 N -0.573 5.573 16 Si 0.786 3.214 17 H -0.182 1.182 18 H -0.206 1.206 19 H -0.210 1.210 20 N -0.340 5.340 21 C 0.410 3.590 22 O -0.484 6.484 23 O -0.286 6.286 24 C 0.084 3.916 25 C -0.232 4.232 26 C -0.190 4.190 27 C -0.237 4.237 28 C 0.023 3.977 29 H 0.093 0.907 30 C -0.204 4.204 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.011 0.989 39 H 0.016 0.984 40 H 0.071 0.929 41 H 0.249 0.751 42 H 0.076 0.924 43 H 0.117 0.883 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.128 0.872 47 H 0.088 0.912 48 H 0.076 0.924 49 H 0.117 0.883 50 H 0.075 0.925 51 H 0.085 0.915 52 H 0.063 0.937 53 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.122 8.527 13.997 16.685 hybrid contribution 0.200 -1.015 -0.819 1.320 sum -2.922 7.512 13.178 15.448 Atomic orbital electron populations 1.21726 0.91203 1.03266 1.03325 1.23074 0.97962 0.97987 0.93192 0.87996 1.23718 0.88735 0.97572 0.92827 1.50289 1.11712 1.62919 1.12777 1.20929 0.81288 0.75265 0.91009 1.90622 1.66572 1.54088 1.34585 1.20836 0.80893 1.00270 0.92719 0.88300 1.21771 0.99093 0.96560 0.95759 1.18924 0.95223 0.95455 0.90764 1.21631 1.12160 1.23967 0.99624 0.91506 1.25906 0.96046 0.98388 0.99129 1.70112 1.26276 1.44716 1.16147 0.85457 0.78878 0.78528 0.78528 1.18157 1.20625 1.21021 1.44309 1.05875 1.09978 1.73845 1.18078 0.81210 0.84266 0.75476 1.90823 1.84860 1.14563 1.58130 1.86308 1.16652 1.42140 1.83513 1.22510 0.84993 0.88032 0.96052 1.22428 1.03749 1.00544 0.96473 1.21885 0.92475 1.01566 1.03110 1.22473 1.03937 1.00429 0.96813 1.22973 0.86914 0.95060 0.92785 0.90707 1.21931 0.99455 0.97218 1.01836 0.90712 0.91067 0.91330 0.87635 0.89715 0.91605 0.88764 0.98856 0.98427 0.92946 0.75067 0.92417 0.88298 0.92661 0.91463 0.87214 0.91212 0.92380 0.88254 0.92493 0.91518 0.93741 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.57 71.98 0.62 -0.83 16 2 C -0.10 -1.69 4.50 -10.13 -0.05 -1.74 16 3 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.09 1.99 6.07 86.48 0.52 2.51 16 5 N -0.64 -18.41 3.38 -812.73 -2.74 -21.15 16 6 C 0.53 19.57 7.42 87.65 0.65 20.22 16 7 O -0.58 -25.39 17.05 -3.04 -0.05 -25.45 16 8 C 0.16 6.12 2.21 44.24 0.10 6.22 16 9 H 0.10 4.00 7.58 -2.39 -0.02 3.98 16 10 C -0.09 -3.60 4.62 30.60 0.14 -3.46 16 11 C 0.03 1.66 4.86 29.85 0.15 1.80 16 12 C -0.54 -28.48 9.11 25.60 0.23 -28.25 16 13 H 0.07 3.34 7.74 -2.91 -0.02 3.32 16 14 C 0.00 0.18 5.46 84.66 0.46 0.64 16 15 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 16 Si 0.96 42.51 29.54 68.60 2.03 44.54 16 17 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 N -0.68 -27.08 4.07 -573.73 -2.33 -29.42 16 21 C 0.66 26.84 7.89 129.79 1.02 27.86 16 22 O -0.59 -25.83 11.54 19.81 0.23 -25.60 16 23 O -0.37 -13.56 9.94 -55.45 -0.55 -14.11 16 24 C 0.12 3.44 1.13 -10.79 -0.01 3.43 16 25 C -0.17 -4.82 8.37 71.98 0.60 -4.22 16 26 C -0.13 -2.73 8.85 71.98 0.64 -2.09 16 27 C -0.18 -5.09 8.37 71.98 0.60 -4.48 16 28 C 0.12 2.73 4.94 45.10 0.22 2.95 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 C -0.15 -2.60 8.63 71.98 0.62 -1.98 16 31 H 0.07 0.62 8.04 -2.39 -0.02 0.60 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.68 7.12 -2.38 -0.02 0.67 16 34 H 0.11 1.97 7.35 -2.39 -0.02 1.96 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.09 3.22 5.98 -2.39 -0.01 3.21 16 38 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.00 -0.14 7.75 -2.39 -0.02 -0.16 16 40 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.41 15.55 8.71 -92.71 -0.81 14.74 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.05 1.91 5.88 -2.39 -0.01 1.90 16 45 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.11 1.54 8.14 -2.38 -0.02 1.53 16 47 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.06 2.02 5.88 -2.39 -0.01 2.01 16 49 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.07 1.17 7.29 -2.39 -0.02 1.16 16 52 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 53 H 0.10 1.20 7.48 -2.39 -0.02 1.18 16 Total: -1.00 -75.46 420.18 3.46 -72.00 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: 0.08 Total: 35.60 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 6.52 Total: 18.62 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -4.79 Total: -105.61 kcal Atomic # 8 Polarization: -64.78 SS G_CDS: -0.37 Total: -65.15 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -75.46 3.46 -72.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497131713.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.603 kcal (2) G-P(sol) polarization free energy of solvation -75.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds