Wall clock time and date at job start Sat Apr 11 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.50212 * 2 1 4 4 C 1.53045 * 109.49729 * 120.06408 * 2 1 3 5 5 C 1.53037 * 109.53992 * 181.34684 * 4 2 1 6 6 C 1.53188 * 109.31263 * 298.63406 * 5 4 2 7 7 N 1.46929 * 108.77468 * 54.63562 * 6 5 4 8 8 C 1.34774 * 120.63271 * 126.37146 * 7 6 5 9 9 O 1.21345 * 120.00267 * 188.20514 * 8 7 6 10 10 C 1.49456 * 119.99996 * 8.20304 * 8 7 6 11 11 O 1.21352 * 119.99510 * 6.49656 * 10 8 7 12 12 N 1.34771 * 120.00091 * 186.22307 * 10 8 7 13 13 C 1.46501 * 120.00031 * 180.27353 * 12 10 8 14 14 C 1.53004 * 109.47055 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47079 * 300.00272 * 14 13 12 16 16 C 1.53005 * 109.46862 * 60.00197 * 14 13 12 17 17 C 1.50696 * 109.47088 * 180.02562 * 14 13 12 18 18 H 1.08002 * 120.00198 * 0.02562 * 17 14 13 19 19 C 1.37874 * 119.99814 * 180.02562 * 17 14 13 20 20 N 1.31508 * 120.00578 * 359.97438 * 19 17 14 21 21 Si 1.86804 * 119.99827 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.47246 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47473 * 119.99537 * 21 19 17 24 24 H 1.48496 * 109.47227 * 239.99982 * 21 19 17 25 25 C 1.46931 * 118.73709 * 306.63788 * 7 6 5 26 26 H 1.08999 * 109.58787 * 293.57373 * 25 7 6 27 27 C 1.52994 * 109.58270 * 173.14622 * 25 7 6 28 28 C 1.53003 * 109.47597 * 288.99559 * 27 25 7 29 29 O 1.42897 * 109.47356 * 177.41843 * 28 27 25 30 30 H 1.09000 * 109.47202 * 299.93730 * 1 2 3 31 31 H 1.08998 * 109.46857 * 59.93886 * 1 2 3 32 32 H 1.09006 * 109.47306 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.45921 * 61.32615 * 4 2 1 34 34 H 1.09001 * 109.45766 * 301.37053 * 4 2 1 35 35 H 1.08997 * 109.49851 * 178.67731 * 5 4 2 36 36 H 1.09004 * 109.52340 * 58.59746 * 5 4 2 37 37 H 1.08997 * 109.58918 * 294.84781 * 6 5 4 38 38 H 1.08998 * 109.70216 * 174.49182 * 6 5 4 39 39 H 0.97006 * 119.99775 * 0.26977 * 12 10 8 40 40 H 1.08994 * 109.47191 * 299.99805 * 13 12 10 41 41 H 1.09002 * 109.46894 * 60.00320 * 13 12 10 42 42 H 1.09000 * 109.47294 * 60.00022 * 15 14 13 43 43 H 1.08999 * 109.46578 * 179.97438 * 15 14 13 44 44 H 1.08992 * 109.47404 * 299.99870 * 15 14 13 45 45 H 1.09002 * 109.46920 * 59.99877 * 16 14 13 46 46 H 1.08999 * 109.46760 * 179.97438 * 16 14 13 47 47 H 1.09000 * 109.47245 * 299.99816 * 16 14 13 48 48 H 0.96995 * 120.00849 * 179.97438 * 20 19 17 49 49 H 1.09000 * 109.47505 * 48.99761 * 27 25 7 50 50 H 1.09000 * 109.47044 * 169.00068 * 27 25 7 51 51 H 1.09003 * 109.46765 * 297.42005 * 28 27 25 52 52 H 1.09002 * 109.46964 * 57.41035 * 28 27 25 53 53 H 0.96702 * 113.99667 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 3.5708 -0.6940 1.2667 6 6 4.1059 -1.4256 0.0317 7 7 3.5053 -0.8284 -1.1689 8 6 4.2819 -0.3848 -2.1771 9 8 3.7886 0.2389 -3.0937 10 6 5.7507 -0.6608 -2.1661 11 8 6.2259 -1.3828 -1.3143 12 7 6.5464 -0.1125 -3.1055 13 6 7.9853 -0.3879 -3.0983 14 6 8.6516 0.3500 -4.2613 15 6 8.0471 -0.1292 -5.5827 16 6 8.4196 1.8548 -4.1103 17 6 10.1316 0.0661 -4.2543 18 1 10.5546 -0.5766 -3.4965 19 6 10.9456 0.6270 -5.2154 20 7 10.4305 1.4093 -6.1386 21 14 12.7801 0.2746 -5.2072 22 1 13.1056 -0.6285 -4.0741 23 1 13.1650 -0.3758 -6.4854 24 1 13.5281 1.5483 -5.0550 25 6 2.0421 -0.7187 -1.2469 26 1 1.6031 -1.7151 -1.2972 27 6 1.6535 0.0797 -2.4927 28 6 2.0256 1.5503 -2.2928 29 8 1.7179 2.2851 -3.4791 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6971 -1.7570 1.2356 34 1 1.6576 -0.2242 2.1390 35 1 3.9333 -1.1883 2.1679 36 1 3.9159 0.3399 1.2549 37 1 3.8386 -2.4808 0.0877 38 1 5.1903 -1.3253 -0.0137 39 1 6.1664 0.4645 -3.7864 40 1 8.4158 -0.0469 -2.1569 41 1 8.1505 -1.4599 -3.2064 42 1 6.9766 0.0758 -5.5880 43 1 8.5215 0.3969 -6.4111 44 1 8.2123 -1.2011 -5.6902 45 1 8.8503 2.1961 -3.1689 46 1 8.8947 2.3805 -4.9386 47 1 7.3491 2.0597 -4.1156 48 1 11.0032 1.8042 -6.8145 49 1 2.1856 -0.3152 -3.3582 50 1 0.5793 -0.0039 -2.6574 51 1 1.4589 1.9579 -1.4556 52 1 3.0922 1.6298 -2.0825 53 1 1.9287 3.2273 -3.4239 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597341759.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:32 Heat of formation + Delta-G solvation = -109.268128 kcal Electronic energy + Delta-G solvation = -32177.151047 eV Core-core repulsion = 28049.450567 eV Total energy + Delta-G solvation = -4127.700480 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.47177 -40.51975 -38.83088 -38.30749 -37.53695 -35.40530 -34.69994 -33.92324 -32.74701 -30.60094 -28.06395 -27.60269 -27.51043 -27.25438 -26.41291 -24.53394 -23.77349 -22.30724 -21.55190 -20.70988 -20.16738 -18.73749 -18.33148 -17.85678 -17.68503 -17.27220 -16.93153 -16.60141 -16.47839 -16.14314 -15.71304 -15.53185 -15.06057 -14.89574 -14.76819 -14.55543 -14.33860 -14.24699 -14.06050 -13.89471 -13.51862 -13.26852 -13.18932 -13.11628 -12.99355 -12.72768 -12.68634 -12.55171 -12.32421 -12.28999 -12.17360 -12.08986 -11.89076 -11.53097 -11.46916 -11.37423 -11.26135 -11.09732 -10.72886 -10.67604 -10.41866 -10.12804 -9.84530 -9.54248 -8.02151 -6.18797 0.37245 1.33109 1.42708 1.47205 1.56241 2.13613 2.42811 2.55635 3.21855 3.27350 3.43881 3.69375 3.77188 3.93870 4.06506 4.16930 4.27202 4.34286 4.37416 4.46346 4.46941 4.57524 4.60909 4.66705 4.68475 4.80702 4.83631 4.90579 4.91932 4.98777 5.02554 5.04343 5.08351 5.12259 5.15639 5.15858 5.18969 5.27577 5.35713 5.38481 5.49668 5.50583 5.63538 5.64505 5.67064 6.03843 6.09900 6.18347 6.30007 6.40550 6.76793 6.86243 6.93828 7.01703 7.49497 8.97284 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019717 B = 0.002759 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.758605 B =10147.762396 C =11107.209696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.130 4.130 6 C 0.064 3.936 7 N -0.572 5.572 8 C 0.496 3.504 9 O -0.511 6.511 10 C 0.493 3.507 11 O -0.539 6.539 12 N -0.680 5.680 13 C 0.144 3.856 14 C 0.052 3.948 15 C -0.123 4.123 16 C -0.122 4.122 17 C -0.525 4.525 18 H 0.052 0.948 19 C 0.026 3.974 20 N -0.902 5.902 21 Si 0.948 3.052 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.152 3.848 26 H 0.095 0.905 27 C -0.123 4.123 28 C 0.094 3.906 29 O -0.590 6.590 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.412 0.588 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.027 0.973 43 H 0.063 0.937 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.062 0.938 47 H 0.028 0.972 48 H 0.260 0.740 49 H 0.083 0.917 50 H 0.074 0.926 51 H 0.048 0.952 52 H 0.036 0.964 53 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.637 -2.103 14.491 25.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.168 4.168 6 C -0.056 4.056 7 N -0.306 5.306 8 C 0.279 3.721 9 O -0.388 6.388 10 C 0.275 3.725 11 O -0.419 6.419 12 N -0.332 5.332 13 C 0.021 3.979 14 C 0.051 3.949 15 C -0.181 4.181 16 C -0.180 4.180 17 C -0.564 4.564 18 H 0.070 0.930 19 C -0.174 4.174 20 N -0.540 5.540 21 Si 0.775 3.225 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.050 3.950 26 H 0.113 0.887 27 C -0.161 4.161 28 C 0.017 3.983 29 O -0.397 6.397 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.249 0.751 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.043 0.957 46 H 0.081 0.919 47 H 0.047 0.953 48 H 0.069 0.931 49 H 0.101 0.899 50 H 0.092 0.908 51 H 0.066 0.934 52 H 0.054 0.946 53 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -20.684 -2.772 14.237 25.263 hybrid contribution 1.421 0.697 -0.480 1.655 sum -19.263 -2.075 13.756 23.761 Atomic orbital electron populations 1.21792 0.92678 1.02934 1.02542 1.21584 0.97311 0.99726 0.93830 0.91253 1.21615 0.94425 1.01473 0.97352 1.21921 0.96660 1.00696 0.97566 1.22926 1.02703 0.97382 0.82623 1.48012 1.06710 1.58308 1.17526 1.19991 0.87067 0.81093 0.83976 1.90863 1.72937 1.38083 1.36958 1.20609 0.88388 0.81227 0.82248 1.90447 1.76421 1.38375 1.36706 1.46098 1.09026 1.48071 1.29967 1.21526 0.77119 0.99410 0.99804 1.18363 0.93829 0.92331 0.90374 1.21701 0.96740 0.98694 1.00984 1.21690 0.97303 0.98426 1.00587 1.21277 0.92614 1.29548 1.12926 0.92997 1.25498 1.01945 0.94813 0.95097 1.69929 1.35860 1.32276 1.15967 0.85660 0.81294 0.77800 0.77764 1.19558 1.20973 1.20877 1.21512 0.77560 1.00180 0.95728 0.88726 1.22046 1.01104 0.94530 0.98383 1.22429 0.98022 0.91892 0.85954 1.86411 1.87910 1.25636 1.39764 0.91125 0.92614 0.91432 0.90642 0.90099 0.88890 0.92679 0.90401 0.86024 0.75075 0.92595 0.92895 0.95369 0.91845 0.95869 0.95702 0.91872 0.95311 0.93069 0.89866 0.90777 0.93440 0.94581 0.76385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.92 71.98 0.64 -0.83 16 2 C -0.11 -1.46 1.85 -10.86 -0.02 -1.48 16 3 H 0.07 1.13 6.00 -2.39 -0.01 1.11 16 4 C -0.11 -1.29 5.17 30.62 0.16 -1.13 16 5 C -0.13 -1.96 6.08 30.67 0.19 -1.77 16 6 C 0.06 1.33 6.00 86.36 0.52 1.85 16 7 N -0.57 -13.29 2.96 -797.40 -2.36 -15.65 16 8 C 0.50 14.67 6.89 87.27 0.60 15.27 16 9 O -0.51 -16.43 9.84 -3.08 -0.03 -16.46 16 10 C 0.49 16.68 7.75 87.27 0.68 17.36 16 11 O -0.54 -19.28 13.16 -3.25 -0.04 -19.33 16 12 N -0.68 -24.59 4.95 -464.40 -2.30 -26.89 16 13 C 0.14 5.94 4.50 86.38 0.39 6.33 16 14 C 0.05 2.39 0.50 -52.93 -0.03 2.36 16 15 C -0.12 -5.68 8.08 71.98 0.58 -5.10 16 16 C -0.12 -5.55 8.08 71.98 0.58 -4.96 16 17 C -0.53 -27.27 8.01 25.60 0.21 -27.06 16 18 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 19 C 0.03 1.37 5.15 84.65 0.44 1.80 16 20 N -0.90 -48.45 9.35 21.45 0.20 -48.25 16 21 Si 0.95 42.21 29.54 68.60 2.03 44.23 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 C 0.15 2.83 2.66 44.83 0.12 2.95 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 C -0.12 -2.82 4.37 30.59 0.13 -2.68 16 28 C 0.09 2.23 5.14 71.98 0.37 2.60 16 29 O -0.59 -15.30 13.66 -148.83 -2.03 -17.33 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.66 6.84 -2.39 -0.02 0.64 16 32 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.12 3.21 4.27 -51.14 -0.22 2.99 16 39 H 0.41 14.74 5.65 -92.70 -0.52 14.22 16 40 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.03 1.15 6.86 -2.39 -0.02 1.13 16 43 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 44 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 47 H 0.03 1.14 6.86 -2.39 -0.02 1.13 16 48 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 49 H 0.08 2.46 5.62 -28.13 -0.16 2.30 16 50 H 0.07 1.49 7.18 -2.39 -0.02 1.47 16 51 H 0.05 0.91 6.28 -2.39 -0.01 0.90 16 52 H 0.04 1.00 5.50 -2.39 -0.01 0.99 16 53 H 0.39 6.85 9.12 -74.06 -0.68 6.18 16 Total: -1.00 -60.31 390.00 0.40 -59.91 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: -0.62 Total: 34.28 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.55 Total: 5.48 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -4.46 Total: -90.78 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -2.11 Total: -53.12 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -60.31 0.40 -59.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597341759.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.359 kcal (2) G-P(sol) polarization free energy of solvation -60.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds