Wall clock time and date at job start Sat Apr 11 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.49951 * 2 1 4 4 C 1.53033 * 109.50036 * 120.06665 * 2 1 3 5 5 C 1.53036 * 109.54277 * 58.65147 * 4 2 1 6 6 C 1.53193 * 109.33845 * 61.31827 * 5 4 2 7 7 N 1.46934 * 108.77500 * 305.38380 * 6 5 4 8 8 C 1.34776 * 120.62888 * 233.58497 * 7 6 5 9 9 O 1.21347 * 119.99503 * 185.07897 * 8 7 6 10 10 C 1.49443 * 120.00111 * 5.08346 * 8 7 6 11 11 O 1.21354 * 120.00118 * 353.75480 * 10 8 7 12 12 N 1.34780 * 120.00350 * 173.75014 * 10 8 7 13 13 C 1.46499 * 120.00393 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.46967 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47351 * 300.00451 * 14 13 12 16 16 C 1.53000 * 109.46788 * 60.00581 * 14 13 12 17 17 C 1.50701 * 109.46679 * 180.02562 * 14 13 12 18 18 H 1.07995 * 120.00416 * 359.97438 * 17 14 13 19 19 C 1.37881 * 119.99759 * 180.02562 * 17 14 13 20 20 N 1.31513 * 119.99963 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 120.00109 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47148 * 89.99971 * 21 19 17 23 23 H 1.48505 * 109.47057 * 210.00320 * 21 19 17 24 24 H 1.48506 * 109.47127 * 329.99853 * 21 19 17 25 25 C 1.46926 * 118.73613 * 53.60632 * 7 6 5 26 26 H 1.08998 * 109.70519 * 66.25548 * 25 7 6 27 27 C 1.53001 * 109.58266 * 186.60561 * 25 7 6 28 28 C 1.52998 * 109.46934 * 178.49228 * 27 25 7 29 29 O 1.42901 * 109.47217 * 184.90763 * 28 27 25 30 30 H 1.09000 * 109.46770 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47235 * 299.99735 * 1 2 3 32 32 H 1.09005 * 109.47077 * 60.00133 * 1 2 3 33 33 H 1.09007 * 109.46195 * 178.64009 * 4 2 1 34 34 H 1.09000 * 109.45903 * 298.59697 * 4 2 1 35 35 H 1.09002 * 109.46625 * 301.37005 * 5 4 2 36 36 H 1.08999 * 109.52518 * 181.30430 * 5 4 2 37 37 H 1.08998 * 109.58863 * 185.59995 * 6 5 4 38 38 H 1.08995 * 109.70466 * 65.23818 * 6 5 4 39 39 H 0.97003 * 119.99353 * 0.02562 * 12 10 8 40 40 H 1.09000 * 109.47491 * 300.00736 * 13 12 10 41 41 H 1.09001 * 109.46438 * 60.00742 * 13 12 10 42 42 H 1.09000 * 109.47235 * 59.99765 * 15 14 13 43 43 H 1.09003 * 109.47133 * 180.02562 * 15 14 13 44 44 H 1.09003 * 109.47230 * 299.99794 * 15 14 13 45 45 H 1.08999 * 109.47646 * 59.99987 * 16 14 13 46 46 H 1.09003 * 109.46551 * 179.97438 * 16 14 13 47 47 H 1.09001 * 109.47369 * 299.99413 * 16 14 13 48 48 H 0.96998 * 120.00167 * 179.97438 * 20 19 17 49 49 H 1.09008 * 109.47135 * 298.48606 * 27 25 7 50 50 H 1.08998 * 109.47506 * 58.48969 * 27 25 7 51 51 H 1.08999 * 109.47213 * 304.90887 * 28 27 25 52 52 H 1.09002 * 109.47202 * 64.91089 * 28 27 25 53 53 H 0.96702 * 114.00489 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2484 5 6 1.5045 -2.1559 1.2658 6 6 2.0155 -2.9038 0.0303 7 7 1.6523 -2.1379 -1.1699 8 6 0.9756 -2.7221 -2.1785 9 8 0.7619 -2.1067 -3.2023 10 6 0.4883 -4.1276 -2.0360 11 8 0.7978 -4.7813 -1.0615 12 7 -0.2951 -4.6693 -2.9896 13 6 -0.7724 -6.0474 -2.8502 14 6 -1.6348 -6.4132 -4.0598 15 6 -2.8323 -5.4642 -4.1383 16 6 -0.8011 -6.2890 -5.3367 17 6 -2.1262 -7.8306 -3.9160 18 1 -1.8507 -8.4123 -3.0489 19 6 -2.9269 -8.3850 -4.8921 20 7 -3.2620 -7.6767 -5.9483 21 14 -3.5366 -10.1416 -4.7136 22 1 -4.8366 -10.1438 -3.9958 23 1 -3.7134 -10.7434 -6.0597 24 1 -2.5445 -10.9341 -3.9436 25 6 2.0413 -0.7234 -1.2498 26 1 3.1272 -0.6431 -1.3000 27 6 1.4222 -0.0909 -2.4979 28 6 1.7980 1.3909 -2.5585 29 8 1.1277 2.0077 -3.6596 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.1306 -0.7435 1.2357 34 1 1.6983 -0.1955 2.1389 35 1 0.4147 -2.1361 1.2541 36 1 1.8495 -2.6632 2.1667 37 1 1.5573 -3.8918 -0.0142 38 1 3.0993 -3.0057 0.0846 39 1 -0.5423 -4.1469 -3.7687 40 1 0.0807 -6.7235 -2.7947 41 1 -1.3659 -6.1358 -1.9402 42 1 -2.4771 -4.4389 -4.2420 43 1 -3.4469 -5.7251 -4.9998 44 1 -3.4262 -5.5527 -3.2286 45 1 0.0520 -6.9652 -5.2809 46 1 -1.4154 -6.5501 -6.1985 47 1 -0.4460 -5.2637 -5.4406 48 1 -3.8250 -8.0668 -6.6352 49 1 1.7983 -0.5977 -3.3867 50 1 0.3375 -0.1893 -2.4551 51 1 1.4991 1.8798 -1.6313 52 1 2.8758 1.4874 -2.6891 53 1 1.3201 2.9501 -3.7594 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597341762.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:35 Heat of formation + Delta-G solvation = -118.755789 kcal Electronic energy + Delta-G solvation = -31960.108839 eV Core-core repulsion = 27831.996943 eV Total energy + Delta-G solvation = -4128.111896 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.38529 -40.52084 -38.91094 -38.33638 -37.72272 -35.36270 -34.51022 -33.99631 -32.76262 -30.42326 -28.25007 -27.73187 -27.60813 -27.28975 -26.28880 -24.70735 -23.92633 -22.22939 -21.54951 -20.69733 -19.77074 -18.84784 -18.41620 -17.83693 -17.61033 -17.08849 -16.83878 -16.65840 -16.51377 -16.10541 -15.91261 -15.52168 -15.14580 -15.03233 -14.78771 -14.67612 -14.41114 -14.26944 -14.15225 -14.01649 -13.62632 -13.24936 -13.21924 -13.10826 -12.84745 -12.75287 -12.70992 -12.57655 -12.42513 -12.29257 -12.13432 -12.01509 -11.85287 -11.59910 -11.52427 -11.42323 -11.26185 -10.96571 -10.78895 -10.73793 -10.41963 -10.16029 -9.74228 -9.67467 -8.01951 -6.18837 0.34892 1.30421 1.44296 1.47231 1.55342 2.13587 2.42015 2.53437 3.20304 3.21995 3.41736 3.70568 3.84923 3.89788 4.08595 4.16763 4.28902 4.33118 4.36410 4.44217 4.46456 4.50385 4.58495 4.63157 4.66116 4.68483 4.74473 4.83257 4.96112 4.98424 5.02029 5.03535 5.07119 5.13114 5.15385 5.17949 5.20103 5.28440 5.32891 5.39567 5.47749 5.55174 5.62914 5.66757 5.70406 6.02587 6.09225 6.17944 6.28087 6.40223 6.76449 6.85969 6.96261 6.99955 7.49402 8.97383 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.002716 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.323800 B =10306.278577 C =11315.676645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 H 0.109 0.891 4 C -0.111 4.111 5 C -0.131 4.131 6 C 0.039 3.961 7 N -0.566 5.566 8 C 0.505 3.495 9 O -0.533 6.533 10 C 0.496 3.504 11 O -0.532 6.532 12 N -0.679 5.679 13 C 0.143 3.857 14 C 0.051 3.949 15 C -0.123 4.123 16 C -0.123 4.123 17 C -0.526 4.526 18 H 0.053 0.947 19 C 0.026 3.974 20 N -0.902 5.902 21 Si 0.949 3.051 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.148 3.852 26 H 0.096 0.904 27 C -0.115 4.115 28 C 0.073 3.927 29 O -0.598 6.598 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.143 0.857 38 H 0.080 0.920 39 H 0.412 0.588 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.027 0.973 43 H 0.063 0.937 44 H 0.023 0.977 45 H 0.024 0.976 46 H 0.063 0.937 47 H 0.027 0.973 48 H 0.260 0.740 49 H 0.070 0.930 50 H 0.056 0.944 51 H 0.066 0.934 52 H 0.060 0.940 53 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.806 19.505 13.597 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.126 0.874 4 C -0.149 4.149 5 C -0.169 4.169 6 C -0.081 4.081 7 N -0.299 5.299 8 C 0.288 3.712 9 O -0.411 6.411 10 C 0.278 3.722 11 O -0.413 6.413 12 N -0.330 5.330 13 C 0.021 3.979 14 C 0.051 3.949 15 C -0.181 4.181 16 C -0.181 4.181 17 C -0.565 4.565 18 H 0.071 0.929 19 C -0.174 4.174 20 N -0.541 5.541 21 Si 0.776 3.224 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.196 1.196 25 C 0.047 3.953 26 H 0.114 0.886 27 C -0.153 4.153 28 C -0.005 4.005 29 O -0.407 6.407 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.159 0.841 38 H 0.098 0.902 39 H 0.249 0.751 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.082 0.918 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.082 0.918 47 H 0.046 0.954 48 H 0.069 0.931 49 H 0.088 0.912 50 H 0.074 0.926 51 H 0.084 0.916 52 H 0.078 0.922 53 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 12.568 18.734 13.487 26.284 hybrid contribution -0.548 -0.469 -0.579 0.925 sum 12.020 18.266 12.908 25.392 Atomic orbital electron populations 1.21904 0.95732 1.01063 1.01935 1.21621 0.95923 1.00475 0.93763 0.87353 1.21588 1.01285 0.94727 0.97271 1.21909 1.00830 0.96666 0.97519 1.23431 1.02052 0.99987 0.82594 1.48023 1.52563 1.11517 1.17765 1.20023 0.79933 0.86866 0.84421 1.90828 1.57406 1.63485 1.29408 1.20579 0.79923 0.88347 0.83331 1.90236 1.58132 1.63090 1.29847 1.46126 1.47824 1.15864 1.23170 1.21562 0.97300 0.79326 0.99745 1.18366 0.91616 0.94623 0.90331 1.21699 0.99548 0.95804 1.01025 1.21703 0.98254 0.96999 1.01177 1.21252 1.31035 0.98022 1.06182 0.92875 1.25513 0.96082 1.00832 0.94955 1.69931 1.36826 1.37350 1.09953 0.85699 0.78607 0.80993 0.77150 1.20495 1.21150 1.19642 1.21512 0.99719 0.78541 0.95576 0.88593 1.21979 1.01386 0.94248 0.97649 1.22391 0.96070 0.92935 0.89128 1.86490 1.72947 1.29266 1.51965 0.94501 0.91099 0.93326 0.90272 0.90063 0.92734 0.89203 0.84103 0.90214 0.75066 0.92549 0.92515 0.95451 0.91845 0.95739 0.95721 0.91836 0.95404 0.93063 0.91176 0.92559 0.91596 0.92193 0.75423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.20 71.98 0.59 -2.05 16 2 C -0.10 -1.36 2.26 -10.72 -0.02 -1.38 16 3 H 0.11 0.98 6.64 -2.38 -0.02 0.96 16 4 C -0.11 -1.28 5.43 30.62 0.17 -1.11 16 5 C -0.13 -2.11 5.74 30.67 0.18 -1.94 16 6 C 0.04 0.83 6.28 86.36 0.54 1.37 16 7 N -0.57 -13.64 2.41 -796.59 -1.92 -15.56 16 8 C 0.51 15.74 7.60 87.27 0.66 16.40 16 9 O -0.53 -18.55 12.03 -3.24 -0.04 -18.59 16 10 C 0.50 17.17 7.81 87.27 0.68 17.85 16 11 O -0.53 -19.05 13.02 -3.26 -0.04 -19.09 16 12 N -0.68 -25.10 4.95 -464.41 -2.30 -27.40 16 13 C 0.14 5.95 4.50 86.38 0.39 6.34 16 14 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 15 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 16 C -0.12 -5.72 8.08 71.98 0.58 -5.14 16 17 C -0.53 -27.47 8.01 25.60 0.21 -27.27 16 18 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 19 C 0.03 1.36 5.15 84.66 0.44 1.80 16 20 N -0.90 -48.83 9.35 21.45 0.20 -48.63 16 21 Si 0.95 42.37 29.54 68.60 2.03 44.39 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 C 0.15 2.79 2.73 44.97 0.12 2.91 16 26 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 27 C -0.11 -2.71 3.01 30.59 0.09 -2.61 16 28 C 0.07 1.21 6.79 71.98 0.49 1.70 16 29 O -0.60 -12.19 13.66 -148.98 -2.03 -14.23 16 30 H 0.04 0.83 5.97 -2.39 -0.01 0.81 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.98 6.35 -2.38 -0.02 0.97 16 33 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 1.06 6.34 -2.39 -0.02 1.04 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.14 3.82 3.70 -85.88 -0.32 3.51 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.41 15.20 5.65 -92.71 -0.52 14.68 16 40 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.03 1.12 6.86 -2.39 -0.02 1.10 16 43 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 44 H 0.02 1.09 8.14 -2.39 -0.02 1.08 16 45 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 47 H 0.03 1.14 6.86 -2.39 -0.02 1.13 16 48 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 49 H 0.07 2.10 6.22 -2.38 -0.01 2.09 16 50 H 0.06 1.64 5.51 -2.39 -0.01 1.63 16 51 H 0.07 0.80 6.29 -2.39 -0.02 0.78 16 52 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 53 H 0.40 3.77 9.12 -74.06 -0.68 3.09 16 Total: -1.00 -62.81 389.74 0.99 -61.82 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -0.57 Total: 33.16 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 5.67 Total: 4.12 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -4.02 Total: -91.59 kcal Atomic # 8 Polarization: -49.79 SS G_CDS: -2.12 Total: -51.91 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -62.81 0.99 -61.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597341762.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.931 kcal (2) G-P(sol) polarization free energy of solvation -62.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds