Wall clock time and date at job start Sat Apr 11 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.52249 * 2 1 4 4 C 1.53192 * 109.49650 * 120.07938 * 2 1 3 5 5 N 1.46932 * 108.89471 * 65.38546 * 4 2 1 6 6 C 1.34775 * 120.63295 * 233.55717 * 5 4 2 7 7 O 1.21585 * 119.99810 * 354.96766 * 6 5 4 8 8 N 1.34773 * 119.99548 * 174.95989 * 6 5 4 9 9 C 1.46509 * 119.99865 * 185.07796 * 8 6 5 10 10 C 1.52996 * 109.47132 * 180.02562 * 9 8 6 11 11 C 1.50708 * 109.46688 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99985 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99446 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00476 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99554 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47049 * 90.00228 * 15 13 11 17 17 H 1.48502 * 109.47405 * 209.99900 * 15 13 11 18 18 H 1.48501 * 109.47391 * 330.00368 * 15 13 11 19 19 C 1.46925 * 118.73607 * 53.53908 * 5 4 2 20 20 C 1.53199 * 108.77562 * 306.39308 * 19 5 4 21 21 C 1.53041 * 109.31313 * 54.63407 * 20 19 5 22 22 H 1.08998 * 109.45723 * 58.65363 * 21 20 19 23 23 C 1.50697 * 109.45572 * 178.62810 * 21 20 19 24 24 O 1.20833 * 119.99609 * 120.00304 * 23 21 20 25 25 O 1.34225 * 120.00664 * 299.99745 * 23 21 20 26 26 C 1.45199 * 117.00532 * 180.02562 * 25 23 21 27 27 C 1.53003 * 109.46993 * 59.99780 * 26 25 23 28 28 C 1.52998 * 109.47005 * 180.02562 * 26 25 23 29 29 C 1.52997 * 109.46833 * 300.00147 * 26 25 23 30 30 H 1.08992 * 109.47456 * 299.92318 * 1 2 3 31 31 H 1.09000 * 109.46738 * 59.92379 * 1 2 3 32 32 H 1.09004 * 109.47211 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58906 * 305.53279 * 4 2 1 34 34 H 1.08994 * 109.58943 * 185.24612 * 4 2 1 35 35 H 0.97000 * 120.00552 * 5.07719 * 8 6 5 36 36 H 1.09005 * 109.46845 * 300.00179 * 9 8 6 37 37 H 1.09003 * 109.47202 * 59.99741 * 9 8 6 38 38 H 1.08989 * 109.47520 * 299.99640 * 10 9 8 39 39 H 1.09002 * 109.46741 * 60.00308 * 10 9 8 40 40 H 0.96996 * 119.99828 * 180.02562 * 14 13 11 41 41 H 1.09007 * 109.58969 * 66.17900 * 19 5 4 42 42 H 1.08996 * 109.59028 * 186.45852 * 19 5 4 43 43 H 1.08996 * 109.49558 * 174.58817 * 20 19 5 44 44 H 1.08997 * 109.49218 * 294.65125 * 20 19 5 45 45 H 1.09006 * 109.46619 * 60.00365 * 27 26 25 46 46 H 1.08993 * 109.46786 * 180.02562 * 27 26 25 47 47 H 1.08998 * 109.47188 * 300.00102 * 27 26 25 48 48 H 1.08996 * 109.47436 * 60.00116 * 28 26 25 49 49 H 1.09002 * 109.46811 * 179.97438 * 28 26 25 50 50 H 1.08992 * 109.47264 * 299.99655 * 28 26 25 51 51 H 1.08998 * 109.47449 * 59.99836 * 29 26 25 52 52 H 1.09002 * 109.46953 * 179.97438 * 29 26 25 53 53 H 1.09004 * 109.46966 * 299.99888 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 1.6543 -2.1391 1.1715 6 6 0.9790 -2.7231 2.1812 7 8 0.7642 -2.1054 3.2062 8 7 0.5417 -3.9916 2.0544 9 6 -0.2871 -4.5891 3.1044 10 6 -0.6444 -6.0253 2.7167 11 6 -1.4964 -6.6400 3.7972 12 1 -1.7567 -6.0640 4.6729 13 6 -1.9428 -7.9382 3.6680 14 7 -1.6247 -8.6401 2.6023 15 14 -2.9995 -8.6999 5.0069 16 1 -4.4322 -8.4410 4.7140 17 1 -2.7606 -10.1649 5.0527 18 1 -2.6460 -8.0994 6.3182 19 6 2.0171 -2.9054 -0.0284 20 6 1.5033 -2.1595 -1.2639 21 6 2.0382 -0.7257 -1.2483 22 1 3.1280 -0.7448 -1.2363 23 6 1.5623 0.0011 -2.4797 24 8 0.8834 0.9946 -2.3702 25 8 1.8926 -0.4551 -3.6981 26 6 1.3997 0.2955 -4.8391 27 6 1.9350 1.7275 -4.7772 28 6 1.8741 -0.3715 -6.1317 29 6 -0.1298 0.3210 -4.8104 30 1 -0.3634 0.5126 0.8906 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6006 -0.2731 2.1389 34 1 3.1272 -0.6441 1.2994 35 1 0.7757 -4.5090 1.2680 36 1 0.2647 -4.5934 4.0445 37 1 -1.2006 -4.0061 3.2220 38 1 -1.1960 -6.0214 1.7767 39 1 0.2694 -6.6079 2.5995 40 1 -1.9390 -9.5532 2.5114 41 1 3.1012 -3.0036 -0.0854 42 1 1.5627 -3.8950 0.0188 43 1 1.8485 -2.6668 -2.1648 44 1 0.4136 -2.1419 -1.2512 45 1 3.0247 1.7092 -4.7976 46 1 1.5646 2.2910 -5.6335 47 1 1.5966 2.2024 -3.8563 48 1 1.4924 -1.3915 -6.1756 49 1 1.5037 0.1917 -6.9883 50 1 2.9637 -0.3901 -6.1524 51 1 -0.4681 0.7959 -3.8895 52 1 -0.4998 0.8849 -5.6667 53 1 -0.5111 -0.6992 -4.8544 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602291807.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:42 Heat of formation + Delta-G solvation = -145.385757 kcal Electronic energy + Delta-G solvation = -31077.134581 eV Core-core repulsion = 26947.867923 eV Total energy + Delta-G solvation = -4129.266658 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.25721 -41.30983 -39.25778 -37.74461 -36.60263 -35.14153 -34.99740 -34.25917 -32.73751 -31.35015 -28.46366 -28.34300 -28.27810 -27.60531 -26.16832 -24.10074 -23.58325 -22.93379 -21.58393 -20.59925 -19.84664 -19.27271 -18.49327 -18.07989 -17.46745 -17.06273 -17.04941 -16.73829 -16.49868 -16.01756 -15.58179 -15.37375 -15.29480 -15.18928 -14.87320 -14.83453 -14.47739 -14.27322 -14.11839 -13.84618 -13.34122 -13.25283 -13.11851 -13.07718 -12.94673 -12.91868 -12.87639 -12.72410 -12.65034 -12.51833 -12.41894 -12.23230 -12.07302 -12.00035 -11.67150 -11.62883 -11.58957 -11.41783 -11.32429 -11.09076 -10.77310 -10.59504 -10.13944 -9.44522 -8.23299 -6.33183 1.22715 1.42267 1.42696 1.53982 1.65303 1.73045 2.17844 2.41386 3.01555 3.11472 3.42008 3.60495 3.67732 3.76528 3.81844 3.94339 3.97482 4.10212 4.17788 4.32199 4.44784 4.49008 4.52509 4.59525 4.61014 4.63888 4.67229 4.70889 4.77531 4.82484 4.83803 4.86933 4.87293 4.89598 4.91076 5.07779 5.09396 5.10257 5.18947 5.26780 5.31500 5.32004 5.34882 5.51910 5.59941 5.60650 5.66875 5.80021 5.95378 6.18341 6.79582 6.86816 7.01476 7.35871 7.59067 8.88590 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016844 B = 0.002192 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.948794 B =12767.870328 C =13694.574032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 H 0.100 0.900 4 C 0.135 3.865 5 N -0.624 5.624 6 C 0.701 3.299 7 O -0.638 6.638 8 N -0.735 5.735 9 C 0.160 3.840 10 C 0.026 3.974 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.008 3.992 14 N -0.925 5.925 15 Si 0.964 3.036 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.267 1.267 19 C 0.109 3.891 20 C -0.122 4.122 21 C -0.070 4.070 22 H 0.139 0.861 23 C 0.470 3.530 24 O -0.517 6.517 25 O -0.352 6.352 26 C 0.108 3.892 27 C -0.179 4.179 28 C -0.137 4.137 29 C -0.181 4.181 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.404 0.596 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.008 0.992 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.094 0.906 50 H 0.072 0.928 51 H 0.060 0.940 52 H 0.086 0.914 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.296 18.755 -20.251 30.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 H 0.118 0.882 4 C 0.012 3.988 5 N -0.362 5.362 6 C 0.402 3.598 7 O -0.520 6.520 8 N -0.392 5.392 9 C 0.036 3.964 10 C -0.012 4.012 11 C -0.584 4.584 12 H 0.076 0.924 13 C -0.191 4.191 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.192 1.192 19 C -0.013 4.013 20 C -0.160 4.160 21 C -0.089 4.089 22 H 0.157 0.843 23 C 0.314 3.686 24 O -0.406 6.406 25 O -0.269 6.269 26 C 0.072 3.928 27 C -0.236 4.236 28 C -0.194 4.194 29 C -0.239 4.239 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.242 0.758 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.026 0.974 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.129 0.871 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.113 0.887 50 H 0.091 0.909 51 H 0.079 0.921 52 H 0.104 0.896 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.897 19.320 -19.612 29.991 hybrid contribution -0.924 -0.672 0.378 1.203 sum 10.973 18.648 -19.234 28.950 Atomic orbital electron populations 1.21951 0.95798 1.00910 1.02031 1.21320 0.96082 0.99941 0.92518 0.88158 1.21590 1.00656 0.78677 0.97864 1.47287 1.59034 1.11991 1.17851 1.16065 0.78512 0.81703 0.83501 1.90845 1.65177 1.65371 1.30622 1.45404 1.55648 1.12885 1.25288 1.21063 0.92127 0.94101 0.89128 1.19108 0.95871 0.89832 0.96365 1.21455 1.32491 0.98609 1.05875 0.92416 1.25850 0.97500 0.97597 0.98165 1.70050 1.46520 1.10549 1.29362 0.85460 0.78883 0.77479 0.79316 1.19830 1.20428 1.19154 1.21881 1.02323 0.94603 0.82510 1.21923 1.01314 0.93197 0.99602 1.21144 1.04170 0.95301 0.88276 0.84299 1.23809 0.76684 0.82852 0.85239 1.90547 1.36191 1.26564 1.87298 1.86547 1.70259 1.55203 1.14908 1.22420 0.94051 0.91875 0.84426 1.22444 1.01805 0.95162 1.04162 1.21867 1.02711 1.01535 0.93322 1.22466 0.94475 1.02858 1.04062 0.93910 0.91241 0.94190 0.90787 0.88637 0.75764 0.93912 0.94148 0.97368 0.97209 0.92534 0.87708 0.89781 0.87119 0.92244 0.91454 0.89641 0.91879 0.91451 0.88744 0.90930 0.92068 0.89558 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 8.40 71.98 0.60 -3.01 16 2 C -0.08 -1.44 2.37 -10.70 -0.03 -1.47 16 3 H 0.10 1.66 8.07 -2.39 -0.02 1.64 16 4 C 0.13 2.81 5.81 86.36 0.50 3.31 16 5 N -0.62 -15.39 2.42 -836.89 -2.03 -17.42 16 6 C 0.70 24.85 8.30 179.06 1.49 26.34 16 7 O -0.64 -28.15 15.79 -3.99 -0.06 -28.21 16 8 N -0.74 -26.54 5.47 -478.52 -2.62 -29.16 16 9 C 0.16 7.12 5.62 86.38 0.49 7.61 16 10 C 0.03 1.31 5.09 29.85 0.15 1.46 16 11 C -0.55 -30.75 9.11 25.60 0.23 -30.52 16 12 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 13 C 0.01 0.43 5.46 84.66 0.46 0.89 16 14 N -0.93 -54.11 13.29 21.45 0.28 -53.83 16 15 Si 0.96 43.85 29.54 68.60 2.03 45.87 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 C 0.11 1.82 6.43 86.36 0.56 2.38 16 20 C -0.12 -1.82 4.96 30.67 0.15 -1.66 16 21 C -0.07 -1.01 2.36 -11.50 -0.03 -1.03 16 22 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 23 C 0.47 8.37 6.28 71.23 0.45 8.82 16 24 O -0.52 -11.47 9.24 21.94 0.20 -11.26 16 25 O -0.35 -5.75 9.77 -51.37 -0.50 -6.25 16 26 C 0.11 1.50 1.13 -10.79 -0.01 1.49 16 27 C -0.18 -2.35 8.37 71.98 0.60 -1.75 16 28 C -0.14 -1.24 8.85 71.98 0.64 -0.61 16 29 C -0.18 -2.77 8.37 71.98 0.60 -2.17 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.74 5.63 -2.39 -0.01 1.73 16 32 H 0.04 1.08 5.98 -2.39 -0.01 1.06 16 33 H 0.07 1.97 7.03 -2.39 -0.02 1.96 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.40 12.42 5.93 -92.71 -0.55 11.87 16 36 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.08 1.49 5.56 -2.39 -0.01 1.47 16 43 H 0.11 1.22 8.08 -2.39 -0.02 1.20 16 44 H 0.06 1.16 6.34 -2.39 -0.02 1.14 16 45 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.06 1.13 5.89 -2.39 -0.01 1.11 16 48 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.06 1.24 5.89 -2.39 -0.01 1.22 16 52 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 53 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -72.53 406.31 4.51 -68.02 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.35 Total: 22.16 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 6.86 Total: 10.08 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -4.36 Total: -100.41 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.36 Total: -45.73 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -72.53 4.51 -68.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602291807.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.362 kcal (2) G-P(sol) polarization free energy of solvation -72.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds