Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47613 * 2 1 4 4 O 1.45204 * 109.47107 * 239.99762 * 2 1 3 5 5 C 1.34221 * 116.99869 * 90.00430 * 4 2 1 6 6 O 1.20828 * 120.00213 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00084 * 179.97438 * 5 4 2 8 8 H 1.08999 * 109.46926 * 37.62192 * 7 5 4 9 9 C 1.53002 * 109.47082 * 277.61715 * 7 5 4 10 10 N 1.46899 * 109.47077 * 157.61806 * 7 5 4 11 11 C 1.47850 * 111.00026 * 168.11808 * 10 7 5 12 12 H 1.08996 * 110.37261 * 27.53501 * 11 10 7 13 13 C 1.53001 * 110.37098 * 265.19591 * 11 10 7 14 14 C 1.54905 * 104.79464 * 146.36540 * 11 10 7 15 15 C 1.55140 * 101.65578 * 322.92827 * 14 11 10 16 16 C 1.47448 * 111.00116 * 288.95976 * 10 7 5 17 17 H 1.09002 * 109.88641 * 117.33494 * 16 10 7 18 18 C 1.52996 * 109.88865 * 356.31332 * 16 10 7 19 19 C 1.50701 * 109.46757 * 119.99995 * 2 1 3 20 20 O 1.21289 * 119.99958 * 114.99664 * 19 2 1 21 21 N 1.34772 * 120.00224 * 294.99884 * 19 2 1 22 22 C 1.46501 * 119.99761 * 359.97438 * 21 19 2 23 23 C 1.46497 * 120.00168 * 180.02562 * 21 19 2 24 24 C 1.50701 * 109.47290 * 89.99707 * 23 21 19 25 25 H 1.07997 * 119.99801 * 0.02562 * 24 23 21 26 26 C 1.37877 * 120.00185 * 179.97438 * 24 23 21 27 27 N 1.31508 * 119.99972 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 120.00173 * 180.02562 * 26 24 23 29 29 H 1.48498 * 109.47397 * 59.99684 * 28 26 24 30 30 H 1.48495 * 109.47280 * 179.97438 * 28 26 24 31 31 H 1.48505 * 109.46919 * 300.00019 * 28 26 24 32 32 H 1.09006 * 109.46615 * 59.99706 * 1 2 3 33 33 H 1.08997 * 109.47163 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47317 * 300.00351 * 1 2 3 35 35 H 1.08992 * 109.47062 * 295.30195 * 9 7 5 36 36 H 1.08996 * 109.46760 * 55.30577 * 9 7 5 37 37 H 1.09003 * 109.46932 * 175.29949 * 9 7 5 38 38 H 1.08995 * 109.47611 * 66.29100 * 13 11 10 39 39 H 1.09005 * 109.46720 * 186.29342 * 13 11 10 40 40 H 1.09000 * 109.46924 * 306.28860 * 13 11 10 41 41 H 1.09007 * 110.98770 * 204.84124 * 14 11 10 42 42 H 1.08997 * 110.99414 * 81.02483 * 14 11 10 43 43 H 1.09002 * 110.70586 * 277.28056 * 15 14 11 44 44 H 1.08994 * 110.70679 * 154.03443 * 15 14 11 45 45 H 1.08999 * 109.47147 * 63.11542 * 18 16 10 46 46 H 1.08996 * 109.47409 * 183.11723 * 18 16 10 47 47 H 1.09005 * 109.47065 * 303.12070 * 18 16 10 48 48 H 1.08996 * 109.47202 * 90.00212 * 22 21 19 49 49 H 1.09001 * 109.46993 * 209.99885 * 22 21 19 50 50 H 1.08998 * 109.47073 * 329.99869 * 22 21 19 51 51 H 1.09002 * 109.47119 * 209.99939 * 23 21 19 52 52 H 1.09003 * 109.47206 * 329.99979 * 23 21 19 53 53 H 0.97005 * 120.00144 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2172 0.0639 -2.2810 6 8 1.9975 1.2516 -2.2506 7 6 2.7194 -0.5772 -3.5491 8 1 2.2634 -1.5604 -3.6644 9 6 4.2405 -0.7254 -3.4778 10 7 2.3629 0.2656 -4.6983 11 6 3.0734 -0.1737 -5.9182 12 1 3.3014 -1.2380 -5.8620 13 6 4.3565 0.6378 -6.1085 14 6 2.0822 0.1053 -7.0754 15 6 0.7231 -0.2483 -6.4161 16 6 0.9121 0.2193 -4.9576 17 1 0.4804 1.2117 -4.8275 18 6 0.2434 -0.7686 -3.9998 19 6 2.0322 -0.7104 1.2305 20 8 2.6528 -1.7468 1.1216 21 7 1.7918 -0.1942 2.4520 22 6 1.0426 1.0579 2.5836 23 6 2.2805 -0.8846 3.6481 24 6 3.6619 -0.3863 3.9866 25 1 4.1289 0.3694 3.3724 26 6 4.3292 -0.8943 5.0810 27 7 3.7599 -1.8134 5.8298 28 14 6.0412 -0.2762 5.5009 29 1 5.9905 1.1854 5.7584 30 1 6.5361 -0.9751 6.7140 31 1 6.9578 -0.5470 4.3643 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 4.7008 0.2621 -3.4466 36 1 4.5097 -1.2804 -2.5792 37 1 4.5947 -1.2638 -4.3570 38 1 5.0544 0.4084 -5.3033 39 1 4.8097 0.3815 -7.0662 40 1 4.1195 1.7015 -6.0918 41 1 2.2837 -0.5443 -7.9272 42 1 2.1118 1.1541 -7.3706 43 1 0.5434 -1.3227 -6.4560 44 1 -0.0905 0.2977 -6.8934 45 1 0.3675 -0.4209 -2.9742 46 1 -0.8188 -0.8390 -4.2336 47 1 0.7053 -1.7499 -4.1091 48 1 -0.0215 0.8374 2.6677 49 1 1.3754 1.5883 3.4757 50 1 1.2167 1.6794 1.7052 51 1 1.6080 -0.6858 4.4826 52 1 2.3176 -1.9574 3.4589 53 1 4.2295 -2.1711 6.5995 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741023562.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -119.487659 kcal Electronic energy + Delta-G solvation = -31807.134183 eV Core-core repulsion = 27678.990550 eV Total energy + Delta-G solvation = -4128.143632 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.34390 -41.03527 -40.08455 -37.56279 -36.72295 -34.98410 -34.73586 -33.93806 -32.94813 -29.95802 -29.59522 -29.13734 -27.70362 -26.57089 -25.74141 -24.80081 -23.94177 -22.17793 -21.67523 -20.49187 -20.06775 -19.02606 -18.69446 -18.17142 -17.63178 -17.40290 -17.11720 -16.94813 -16.67784 -16.41406 -15.85354 -15.17348 -14.96574 -14.74476 -14.60875 -14.36261 -14.24394 -14.12570 -13.87655 -13.76317 -13.56800 -13.47320 -13.34221 -13.25919 -13.17619 -13.03870 -12.84127 -12.78137 -12.63284 -12.54500 -12.48236 -12.34126 -12.22148 -12.12206 -11.93741 -11.76015 -11.71373 -11.57809 -11.47856 -11.34387 -10.66457 -10.64112 -9.54725 -9.33372 -8.25395 -6.40093 1.07427 1.19893 1.35508 1.39440 1.46798 1.59348 2.26546 2.40463 2.81659 3.04504 3.37205 3.44677 3.60818 3.68748 3.75550 3.81010 3.86420 3.91077 3.99173 4.16837 4.29770 4.32601 4.34709 4.46231 4.48459 4.55870 4.58664 4.61401 4.64173 4.67419 4.77951 4.82843 4.88830 4.91579 4.94141 5.00660 5.03134 5.04363 5.08475 5.14601 5.17081 5.26242 5.31726 5.38873 5.48105 5.48842 5.75799 5.88526 6.01485 6.02175 6.52962 6.67976 6.70082 7.17825 7.33653 8.81801 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018286 B = 0.002647 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.886002 B =10577.126388 C =11494.490856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.080 3.920 3 H 0.110 0.890 4 O -0.347 6.347 5 C 0.469 3.531 6 O -0.513 6.513 7 C 0.088 3.912 8 H 0.096 0.904 9 C -0.149 4.149 10 N -0.518 5.518 11 C 0.066 3.934 12 H 0.069 0.931 13 C -0.143 4.143 14 C -0.118 4.118 15 C -0.131 4.131 16 C 0.065 3.935 17 H 0.074 0.926 18 C -0.177 4.177 19 C 0.500 3.500 20 O -0.577 6.577 21 N -0.599 5.599 22 C 0.069 3.931 23 C 0.260 3.740 24 C -0.548 4.548 25 H 0.051 0.949 26 C 0.011 3.989 27 N -0.925 5.925 28 Si 0.966 3.034 29 H -0.261 1.261 30 H -0.276 1.276 31 H -0.279 1.279 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.036 0.964 46 H 0.084 0.916 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.084 0.916 51 H 0.034 0.966 52 H 0.002 0.998 53 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.770 5.334 -26.723 28.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.022 3.978 3 H 0.127 0.873 4 O -0.263 6.263 5 C 0.312 3.688 6 O -0.400 6.400 7 C -0.022 4.022 8 H 0.113 0.887 9 C -0.206 4.206 10 N -0.245 5.245 11 C -0.041 4.041 12 H 0.087 0.913 13 C -0.201 4.201 14 C -0.156 4.156 15 C -0.169 4.169 16 C -0.042 4.042 17 H 0.092 0.908 18 C -0.234 4.234 19 C 0.287 3.713 20 O -0.457 6.457 21 N -0.331 5.331 22 C -0.073 4.073 23 C 0.140 3.860 24 C -0.587 4.587 25 H 0.069 0.931 26 C -0.189 4.189 27 N -0.565 5.565 28 Si 0.790 3.210 29 H -0.185 1.185 30 H -0.200 1.200 31 H -0.204 1.204 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.055 0.945 46 H 0.103 0.897 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.103 0.897 51 H 0.052 0.948 52 H 0.020 0.980 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.369 5.570 -26.407 27.976 hybrid contribution 0.635 -0.560 0.921 1.251 sum -6.734 5.010 -25.486 26.833 Atomic orbital electron populations 1.22271 0.89351 1.04370 1.05718 1.22481 0.97740 0.96525 0.81089 0.87282 1.86628 1.77234 1.42429 1.20048 1.24044 0.73389 0.86007 0.85344 1.90615 1.48237 1.17100 1.84065 1.21449 0.98378 0.96178 0.86172 0.88711 1.22089 0.90940 1.03359 1.04234 1.63468 1.06617 1.51258 1.03120 1.22725 0.95139 0.98461 0.87762 0.91341 1.21948 0.95761 1.00086 1.02273 1.22743 0.93114 1.02796 0.96976 1.22845 0.98779 1.02037 0.93230 1.22469 0.86898 0.99089 0.95790 0.90768 1.22527 1.02861 0.99574 0.98477 1.20621 0.80109 0.85413 0.85119 1.90659 1.42230 1.26075 1.86754 1.48054 1.54091 1.25311 1.05688 1.22184 0.96552 0.84556 1.04009 1.18850 0.93874 0.91816 0.81497 1.21649 1.02255 1.23213 1.11560 0.93121 1.25821 1.02342 0.94911 0.95793 1.70027 1.39876 1.28918 1.17642 0.85497 0.78872 0.79115 0.77528 1.18503 1.20039 1.20445 0.89684 0.91256 0.87369 0.91419 0.92063 0.87811 0.92374 0.90445 0.93015 0.88636 0.90639 0.90267 0.89482 0.94481 0.89734 0.91313 0.89635 0.90595 0.89717 0.94797 0.98028 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 9.27 71.98 0.67 -3.36 16 2 C 0.08 2.72 2.16 29.85 0.06 2.79 16 3 H 0.11 3.59 6.14 -2.39 -0.01 3.58 16 4 O -0.35 -12.17 9.31 -44.99 -0.42 -12.59 16 5 C 0.47 14.32 4.05 71.24 0.29 14.61 16 6 O -0.51 -17.35 15.61 21.96 0.34 -17.00 16 7 C 0.09 2.05 2.03 44.17 0.09 2.14 16 8 H 0.10 2.00 5.70 -2.39 -0.01 1.99 16 9 C -0.15 -3.20 7.59 71.98 0.55 -2.65 16 10 N -0.52 -10.51 4.32 -815.26 -3.52 -14.03 16 11 C 0.07 0.94 2.38 45.38 0.11 1.05 16 12 H 0.07 0.87 6.95 -2.39 -0.02 0.85 16 13 C -0.14 -1.99 9.13 71.98 0.66 -1.33 16 14 C -0.12 -1.27 6.49 31.98 0.21 -1.06 16 15 C -0.13 -1.51 6.47 31.78 0.21 -1.30 16 16 C 0.07 1.17 3.65 45.26 0.17 1.33 16 17 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 18 C -0.18 -3.22 7.76 71.98 0.56 -2.66 16 19 C 0.50 22.32 7.10 87.66 0.62 22.95 16 20 O -0.58 -31.80 16.09 15.69 0.25 -31.55 16 21 N -0.60 -26.05 2.86 -851.13 -2.43 -28.48 16 22 C 0.07 2.07 8.92 127.77 1.14 3.21 16 23 C 0.26 14.15 5.16 85.63 0.44 14.59 16 24 C -0.55 -32.04 9.39 25.60 0.24 -31.80 16 25 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 26 C 0.01 0.63 5.46 84.66 0.46 1.09 16 27 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 28 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 29 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 30 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 31 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 32 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.11 2.26 5.12 -2.39 -0.01 2.25 16 35 H 0.07 1.55 7.15 -2.39 -0.02 1.53 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.10 1.60 5.98 -2.39 -0.01 1.58 16 38 H 0.06 0.88 5.21 -2.39 -0.01 0.86 16 39 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.07 0.87 8.06 -2.39 -0.02 0.85 16 43 H 0.08 0.79 7.86 -2.39 -0.02 0.77 16 44 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.04 0.86 5.03 -2.39 -0.01 0.85 16 46 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.07 1.17 6.35 -2.38 -0.02 1.15 16 48 H 0.09 2.01 7.02 -2.39 -0.02 1.99 16 49 H 0.08 2.36 8.07 -2.39 -0.02 2.34 16 50 H 0.08 2.12 6.08 -2.39 -0.01 2.11 16 51 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 52 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16 53 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -78.33 404.95 3.90 -74.44 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.90 Total: 17.98 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 6.46 Total: 19.60 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -5.67 Total: -98.21 kcal Atomic # 8 Polarization: -61.32 SS G_CDS: 0.18 Total: -61.14 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -78.33 3.90 -74.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741023562.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.050 kcal (2) G-P(sol) polarization free energy of solvation -78.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds