Wall clock time and date at job start Sat Apr 11 2020 06:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46577 * 2 1 4 4 C 1.53036 * 109.46207 * 119.96660 * 2 1 3 5 5 C 1.53115 * 109.27765 * 60.83760 * 4 2 1 6 6 C 1.53123 * 109.16049 * 57.65618 * 5 4 2 7 7 H 1.09002 * 109.53602 * 62.31024 * 6 5 4 8 8 C 1.50697 * 109.50218 * 182.40650 * 6 5 4 9 9 O 1.20821 * 120.00594 * 119.80524 * 8 6 5 10 10 O 1.34235 * 119.99774 * 299.79747 * 8 6 5 11 11 C 1.45202 * 116.99865 * 180.02562 * 10 8 6 12 12 C 1.52994 * 109.47257 * 60.00161 * 11 10 8 13 13 C 1.53004 * 109.47227 * 180.02562 * 11 10 8 14 14 C 1.53008 * 109.47042 * 300.00249 * 11 10 8 15 15 C 1.53030 * 109.27647 * 302.34438 * 6 5 4 16 16 N 1.46845 * 109.46811 * 240.02087 * 2 1 3 17 17 C 1.46896 * 110.99974 * 65.82043 * 16 2 1 18 18 C 1.50700 * 109.47459 * 170.00319 * 17 16 2 19 19 O 1.21273 * 119.99563 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00110 * 180.02562 * 18 17 16 21 21 C 1.46494 * 119.99879 * 180.02562 * 20 18 17 22 22 C 1.50705 * 109.47319 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99509 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00257 * 179.97438 * 22 21 20 25 25 N 1.31514 * 119.99910 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 119.99897 * 0.02562 * 24 22 21 27 27 H 1.48506 * 109.47433 * 89.99742 * 26 24 22 28 28 H 1.48505 * 109.47208 * 209.99853 * 26 24 22 29 29 H 1.48502 * 109.47385 * 329.99547 * 26 24 22 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 59.97975 * 1 2 3 32 32 H 1.09004 * 109.47261 * 299.97956 * 1 2 3 33 33 H 1.09001 * 109.50549 * 180.78114 * 4 2 1 34 34 H 1.09006 * 109.50742 * 300.89677 * 4 2 1 35 35 H 1.09000 * 109.52666 * 297.74978 * 5 4 2 36 36 H 1.09008 * 109.57255 * 177.59223 * 5 4 2 37 37 H 1.09001 * 109.47559 * 59.99884 * 12 11 10 38 38 H 1.09001 * 109.47723 * 180.02562 * 12 11 10 39 39 H 1.09008 * 109.47451 * 300.00266 * 12 11 10 40 40 H 1.08999 * 109.46467 * 59.99761 * 13 11 10 41 41 H 1.09001 * 109.46844 * 179.97438 * 13 11 10 42 42 H 1.08996 * 109.46628 * 300.00327 * 13 11 10 43 43 H 1.09000 * 109.46755 * 60.00015 * 14 11 10 44 44 H 1.09000 * 109.46695 * 179.97438 * 14 11 10 45 45 H 1.09001 * 109.47041 * 299.99814 * 14 11 10 46 46 H 1.09000 * 109.46253 * 299.16255 * 15 6 5 47 47 H 1.08997 * 109.45759 * 179.19109 * 15 6 5 48 48 H 1.09003 * 109.47390 * 290.01108 * 17 16 2 49 49 H 1.09004 * 109.47342 * 49.99945 * 17 16 2 50 50 H 0.97002 * 120.00312 * 0.02562 * 20 18 17 51 51 H 1.09007 * 109.47324 * 299.99996 * 21 20 18 52 52 H 1.09003 * 109.47063 * 60.00115 * 21 20 18 53 53 H 0.97002 * 119.99318 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 1.2500 5 6 1.5443 -2.1694 1.2358 6 6 2.0270 -2.8531 -0.0464 7 1 3.1167 -2.8757 -0.0595 8 6 1.4940 -4.2618 -0.0967 9 8 0.7798 -4.6054 -1.0086 10 8 1.8129 -5.1350 0.8717 11 6 1.2642 -6.4745 0.7583 12 6 1.7446 -7.1137 -0.5460 13 6 1.7333 -7.3199 1.9442 14 6 -0.2641 -6.4013 0.7577 15 6 1.5175 -2.0706 -1.2588 16 7 2.0194 -0.6918 -1.1993 17 6 1.6652 0.0503 -2.4165 18 6 2.3852 -0.5483 -3.5973 19 8 3.1206 -1.4998 -3.4403 20 7 2.2119 -0.0263 -4.8277 21 6 2.9114 -0.6086 -5.9756 22 6 2.5482 0.1529 -7.2244 23 1 1.8650 0.9874 -7.1684 24 6 3.0889 -0.2152 -8.4381 25 7 2.7723 0.4497 -9.5277 26 14 4.2712 -1.6582 -8.5347 27 1 3.5075 -2.9086 -8.7769 28 1 5.2291 -1.4396 -9.6484 29 1 5.0171 -1.7735 -7.2558 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5142 -0.8898 32 1 -0.3634 0.5135 0.8902 33 1 3.1298 -0.7090 1.2578 34 1 1.6637 -0.2162 2.1400 35 1 0.4548 -2.1820 1.2674 36 1 1.9400 -2.6992 2.1024 37 1 2.8334 -7.1660 -0.5457 38 1 1.3324 -8.1192 -0.6314 39 1 1.4101 -6.5114 -1.3907 40 1 1.3906 -6.8643 2.8732 41 1 1.3210 -8.3254 1.8592 42 1 2.8220 -7.3720 1.9450 43 1 -0.5986 -5.7989 -0.0869 44 1 -0.6760 -7.4068 0.6721 45 1 -0.6064 -5.9459 1.6870 46 1 0.4275 -2.0609 -1.2529 47 1 1.8714 -2.5467 -2.1732 48 1 0.5890 -0.0097 -2.5785 49 1 1.9578 1.0943 -2.3036 50 1 1.6240 0.7350 -4.9532 51 1 3.9878 -0.5492 -5.8136 52 1 2.6180 -1.6523 -6.0886 53 1 3.1531 0.1909 -10.3815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817277071.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:58 Heat of formation + Delta-G solvation = -149.642308 kcal Electronic energy + Delta-G solvation = -31361.854409 eV Core-core repulsion = 27232.403173 eV Total energy + Delta-G solvation = -4129.451236 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18449 -41.06050 -39.73576 -38.04206 -36.16453 -35.35005 -34.51267 -34.35763 -32.95947 -30.55250 -28.86345 -28.43600 -28.32091 -27.74451 -25.54220 -24.54254 -23.54274 -22.60234 -21.47754 -20.60257 -19.66754 -19.16916 -18.32624 -17.76773 -17.64205 -17.26159 -17.01971 -16.60691 -16.52013 -16.11316 -15.65602 -15.49611 -15.33611 -15.26491 -14.78077 -14.63433 -14.32619 -14.30736 -14.18553 -14.13824 -13.60887 -13.37832 -13.32857 -13.16542 -13.11732 -12.98385 -12.94293 -12.89678 -12.74160 -12.60560 -12.47897 -12.23735 -12.08886 -11.95534 -11.71566 -11.66931 -11.55301 -11.42852 -11.33249 -10.93450 -10.88562 -10.63836 -9.90251 -9.24792 -8.41852 -6.48210 1.15001 1.29974 1.32226 1.45105 1.57869 1.76887 2.25740 2.32391 2.93528 3.03449 3.46259 3.68887 3.72156 3.74491 3.80260 3.91461 3.96418 4.03714 4.09023 4.21830 4.25921 4.41592 4.51323 4.53257 4.54786 4.61198 4.63839 4.70874 4.71501 4.77666 4.78460 4.79113 4.84496 4.87941 4.97888 5.01971 5.07379 5.08961 5.10136 5.18728 5.20845 5.25458 5.26446 5.27343 5.48576 5.52116 5.54956 5.90248 6.09119 6.17653 6.52857 6.77276 6.88133 7.15136 7.46068 8.72881 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011334 B = 0.002877 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.826473 B = 9728.929881 C =11588.214465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.074 3.926 3 H 0.104 0.896 4 C -0.103 4.103 5 C -0.104 4.104 6 C -0.072 4.072 7 H 0.110 0.890 8 C 0.471 3.529 9 O -0.529 6.529 10 O -0.350 6.350 11 C 0.105 3.895 12 C -0.184 4.184 13 C -0.134 4.134 14 C -0.178 4.178 15 C 0.073 3.927 16 N -0.525 5.525 17 C 0.048 3.952 18 C 0.496 3.504 19 O -0.579 6.579 20 N -0.708 5.708 21 C 0.235 3.765 22 C -0.545 4.545 23 H 0.061 0.939 24 C 0.027 3.973 25 N -0.930 5.930 26 Si 0.935 3.065 27 H -0.268 1.268 28 H -0.271 1.271 29 H -0.262 1.262 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.039 0.961 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.134 0.866 50 H 0.408 0.592 51 H 0.011 0.989 52 H 0.005 0.995 53 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.626 -8.017 30.593 32.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.034 4.034 3 H 0.122 0.878 4 C -0.141 4.141 5 C -0.141 4.141 6 C -0.091 4.091 7 H 0.128 0.872 8 C 0.314 3.686 9 O -0.418 6.418 10 O -0.267 6.267 11 C 0.069 3.931 12 C -0.241 4.241 13 C -0.191 4.191 14 C -0.235 4.235 15 C -0.055 4.055 16 N -0.249 5.249 17 C -0.083 4.083 18 C 0.283 3.717 19 O -0.459 6.459 20 N -0.359 5.359 21 C 0.111 3.889 22 C -0.583 4.583 23 H 0.079 0.921 24 C -0.173 4.173 25 N -0.569 5.569 26 Si 0.759 3.241 27 H -0.193 1.193 28 H -0.195 1.195 29 H -0.187 1.187 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.108 0.892 45 H 0.089 0.911 46 H 0.057 0.943 47 H 0.077 0.923 48 H 0.098 0.902 49 H 0.152 0.848 50 H 0.244 0.756 51 H 0.029 0.971 52 H 0.023 0.977 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.778 -8.834 30.267 31.890 hybrid contribution -0.657 -0.385 -1.461 1.647 sum -5.435 -9.219 28.806 30.730 Atomic orbital electron populations 1.22516 0.96774 1.01984 1.03399 1.21989 0.93465 0.98928 0.88993 0.87772 1.21606 1.01805 0.93588 0.97065 1.21607 1.01295 0.96842 0.94398 1.21032 1.02882 0.86637 0.98594 0.87238 1.23849 0.77277 0.88497 0.78932 1.90594 1.36289 1.79320 1.35599 1.86538 1.68869 1.23259 1.48040 1.22505 0.94121 0.78684 0.97769 1.22488 1.01861 1.02476 0.97307 1.21859 1.02594 0.99189 0.95435 1.22445 0.93779 1.04356 1.02969 1.21796 0.97015 0.89206 0.97454 1.61674 1.60325 1.01203 1.01704 1.21951 0.98871 0.99939 0.87520 1.21343 0.82079 0.83448 0.84793 1.90606 1.40191 1.29526 1.85618 1.46017 1.47996 1.35034 1.06877 1.19030 0.92251 0.93329 0.84316 1.21296 1.28965 1.16575 0.91440 0.92067 1.25571 0.97643 0.98995 0.95101 1.69977 1.45284 1.41976 0.99645 0.85893 0.79667 0.79876 0.78653 1.19310 1.19539 1.18659 0.93261 0.92533 0.89676 0.90842 0.87876 0.91215 0.89073 0.92070 0.89014 0.92888 0.90597 0.88384 0.91384 0.92604 0.89236 0.91056 0.94261 0.92278 0.90154 0.84785 0.75600 0.97080 0.97741 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 8.18 71.98 0.59 -2.14 16 2 C 0.07 1.20 2.92 44.94 0.13 1.33 16 3 H 0.10 1.40 8.02 -2.39 -0.02 1.38 16 4 C -0.10 -1.37 5.61 30.64 0.17 -1.20 16 5 C -0.10 -1.65 4.91 30.67 0.15 -1.50 16 6 C -0.07 -1.72 2.79 -11.49 -0.03 -1.75 16 7 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 8 C 0.47 12.57 6.57 71.24 0.47 13.04 16 9 O -0.53 -17.24 11.48 21.98 0.25 -16.98 16 10 O -0.35 -7.96 9.82 -51.47 -0.51 -8.47 16 11 C 0.10 1.98 1.13 -10.79 -0.01 1.97 16 12 C -0.18 -3.90 8.37 71.98 0.60 -3.29 16 13 C -0.13 -1.59 8.85 71.98 0.64 -0.95 16 14 C -0.18 -3.20 8.37 71.98 0.60 -2.59 16 15 C 0.07 2.11 3.38 86.32 0.29 2.40 16 16 N -0.52 -13.13 4.34 -875.67 -3.80 -16.94 16 17 C 0.05 1.23 4.91 85.56 0.42 1.65 16 18 C 0.50 18.91 7.50 87.66 0.66 19.57 16 19 O -0.58 -26.98 14.32 -3.01 -0.04 -27.02 16 20 N -0.71 -28.93 5.55 -466.79 -2.59 -31.52 16 21 C 0.23 11.90 4.50 85.64 0.38 12.28 16 22 C -0.54 -30.68 9.83 25.60 0.25 -30.43 16 23 H 0.06 3.59 7.84 -2.91 -0.02 3.56 16 24 C 0.03 1.57 5.47 84.65 0.46 2.04 16 25 N -0.93 -56.29 13.96 21.45 0.30 -55.99 16 26 Si 0.94 45.39 27.47 68.60 1.88 47.28 16 27 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 28 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 29 H -0.26 -12.72 6.54 99.48 0.65 -12.07 16 30 H 0.05 0.86 4.80 -2.39 -0.01 0.84 16 31 H 0.06 0.85 6.77 -2.39 -0.02 0.83 16 32 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 0.82 8.14 -2.38 -0.02 0.81 16 35 H 0.07 1.09 6.56 -2.39 -0.02 1.07 16 36 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.49 5.89 -2.38 -0.01 1.47 16 40 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.05 1.35 5.89 -2.39 -0.01 1.33 16 44 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.04 1.12 6.13 -2.39 -0.01 1.10 16 47 H 0.06 2.28 5.75 -2.39 -0.01 2.27 16 48 H 0.08 1.82 6.95 -2.39 -0.02 1.81 16 49 H 0.13 2.65 7.99 -2.39 -0.02 2.63 16 50 H 0.41 14.36 8.32 -92.71 -0.77 13.59 16 51 H 0.01 0.60 7.20 -2.38 -0.02 0.58 16 52 H 0.00 0.25 7.57 -2.39 -0.02 0.23 16 53 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -75.16 402.70 1.35 -73.81 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.08 Total: 25.40 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 5.78 Total: 10.43 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -6.09 Total: -104.44 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -0.30 Total: -52.47 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.28 kcal Total: -75.16 1.35 -73.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817277071.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.829 kcal (2) G-P(sol) polarization free energy of solvation -75.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds